Planaria EST Database


DrC_02575

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02575
         (748 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O14893|GEMI2_HUMAN  Survival of motor neuron protein-inte...    77   6e-14
sp|Q9QZP1|GEMI2_RAT  Survival of motor neuron protein-intera...    73   9e-13
sp|Q9CQQ4|GEMI2_MOUSE  Survival of motor neuron protein-inte...    73   9e-13
sp|O42260|GEMI2_XENLA  Survival of motor neuron protein-inte...    70   5e-12
sp|Q9VUV9|U520_DROME  Putative U5 small nuclear ribonucleopr...    32   1.4  
sp|O42649|SMC3_SCHPO  Structural maintenance of chromosome 3...    32   2.4  
sp|Q6P4P1|SPA3A_MOUSE  Serine protease inhibitor A3A precurs...    32   2.4  
sp|P45354|HXUA2_HAEIN  Heme/hemopexin-binding protein precur...    31   4.0  
sp|P47386|Y140_MYCGE  Hypothetical ATP-binding protein MG140       31   4.0  
sp|P57351|PUR8_BUCAI  Adenylosuccinate lyase (Adenylosuccina...    30   5.3  
>sp|O14893|GEMI2_HUMAN Survival of motor neuron protein-interacting protein 1
           (SMN-interacting protein 1) (Component of gems 2)
           (Gemin-2)
          Length = 280

 Score = 76.6 bits (187), Expect = 6e-14
 Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 20/233 (8%)
 Frame = +1

Query: 100 DYLLSVRYENKNLPDIVIKEVKNVTPKNFGLTHSM-ASLIIHKDEVDNQKNALFFEKNNS 276
           +YL  V+ E    PD+V+ ++    PK      S+  SL   +   +     L +++   
Sbjct: 51  EYLRRVQIEAAQCPDVVVAQID---PKKLKRKQSVNISLSGCQPAPEGYSPTLQWQQQQ- 106

Query: 277 LINEFQELRAAIGKI----KSEKLTNVYKYPDISDEKFWLSFCLGQ-FYADGIEDGSQCE 441
            + +F  +R  + K     KS++L +    P   DE+ W  FCLG+   ADG    +  E
Sbjct: 107 -VAQFSTVRQNVNKHRSHWKSQQLDSNVTMPKSEDEEGWKKFCLGEKLCADGAVGPATNE 165

Query: 442 ------------PIVSVICELSQNQVIKLFGYLAT--GNIPFTHIMGRWIYALLAVIFFP 579
                       P++S++  ++Q  V  +  YL+   G   FT  +GRW+YALLA +  P
Sbjct: 166 SPGIDYVQIGFPPLLSIVSRMNQATVTSVLEYLSNWFGERDFTPELGRWLYALLACLEKP 225

Query: 580 LDNDAVFSLRSIARNMMHLIKNYDGSDPSLVNSMNSIIVIVTCVFKQMDLINE 738
           L  +A   +R +AR    +    D  D   V ++N +I +V+  F Q DL +E
Sbjct: 226 LLPEAHSLIRQLARRCSEVRLLVDSKDDERVPALNLLICLVSRYFDQRDLADE 278
>sp|Q9QZP1|GEMI2_RAT Survival of motor neuron protein-interacting protein 1
           (SMN-interacting protein 1) (Component of gems 2)
           (Gemin-2)
          Length = 269

 Score = 72.8 bits (177), Expect = 9e-13
 Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 20/233 (8%)
 Frame = +1

Query: 100 DYLLSVRYENKNLPDIVIKEVKNVTPKNFGLTHSM-ASLIIHKDEVDNQKNALFFEKNNS 276
           +YL  V+ E    PD+V+ ++    PK      S+  SL       +     L +++   
Sbjct: 40  EYLRRVQIEAAQCPDVVVAQID---PKKLKRKQSVNVSLSGCHPAPEGYSPTLQWQQQQV 96

Query: 277 LINEFQELRAAIGKI----KSEKLTNVYKYPDISDEKFWLSFCLGQ-FYADGIEDGSQCE 441
           +  +F  +R ++ K     KS++L +    P   DE+ W  FCLG+   A+G    S  E
Sbjct: 97  I--QFSSVRQSVHKHRNHWKSQQLDSNVTMPKSEDEEGWKKFCLGERLCAEGATGPSTDE 154

Query: 442 ------------PIVSVICELSQNQVIKLFGYLAT--GNIPFTHIMGRWIYALLAVIFFP 579
                       P++S++  ++Q  +  +  YL+   G   FT  +GRW YALLA +  P
Sbjct: 155 SPGIDYVQVGFPPLLSIVSRMNQATITSVLEYLSNWFGERDFTPELGRWFYALLACLEKP 214

Query: 580 LDNDAVFSLRSIARNMMHLIKNYDGSDPSLVNSMNSIIVIVTCVFKQMDLINE 738
           L  +A   +R +AR    +       D   V ++N +I +V+  F Q DL +E
Sbjct: 215 LLPEAHSLIRQLARRCSEVRLLVGSKDDERVPALNLLICLVSRYFDQRDLADE 267
>sp|Q9CQQ4|GEMI2_MOUSE Survival of motor neuron protein-interacting protein 1
           (SMN-interacting protein 1) (Component of gems 2)
           (Gemin-2)
          Length = 269

 Score = 72.8 bits (177), Expect = 9e-13
 Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 20/233 (8%)
 Frame = +1

Query: 100 DYLLSVRYENKNLPDIVIKEVKNVTPKNFGLTHSM-ASLIIHKDEVDNQKNALFFEKNNS 276
           +YL  V+ E    PD+V+ ++    PK      S+  SL   +   +     L +++   
Sbjct: 40  EYLRRVQIEAAQCPDVVVAQID---PKKLKRKQSVNISLSGCQPAPEGYSPTLQWQQQQ- 95

Query: 277 LINEFQELRAAIGKI----KSEKLTNVYKYPDISDEKFWLSFCLGQ-FYADGIEDGSQCE 441
            +  F  +R ++ K     KS++L +    P   DE+ W  FCLG+   A+G    S  E
Sbjct: 96  -VAHFSTVRQSVHKHRNHWKSQQLDSNVAMPKSEDEEGWKKFCLGERLCAEGATGPSTEE 154

Query: 442 ------------PIVSVICELSQNQVIKLFGYLAT--GNIPFTHIMGRWIYALLAVIFFP 579
                       P++S++  ++Q  +  +  YL+   G   FT  +GRW YALLA +  P
Sbjct: 155 SPGIDYVQVGFPPLLSIVSRMNQTTITSVLEYLSNWFGERDFTPELGRWFYALLACLEKP 214

Query: 580 LDNDAVFSLRSIARNMMHLIKNYDGSDPSLVNSMNSIIVIVTCVFKQMDLINE 738
           L  +A   +R +AR    +       D   V ++N +I +V+  F Q DL +E
Sbjct: 215 LLPEAHSLIRQLARRCSEVRLLVGSKDDERVPALNLLICLVSRYFDQRDLADE 267
>sp|O42260|GEMI2_XENLA Survival of motor neuron protein-interacting protein 1
           (SMN-interacting protein 1) (Component of gems 2)
           (Gemin-2)
          Length = 259

 Score = 70.5 bits (171), Expect = 5e-12
 Identities = 62/231 (26%), Positives = 106/231 (45%), Gaps = 21/231 (9%)
 Frame = +1

Query: 100 DYLLSVRYENKNLPDIVIKEVKNVTPKNFGLTHSMA-SLIIHKDEVDNQKNALFFEKNNS 276
           +YL  V+ E    PD+VI ++    PK      +++ SL   +   D    +L +++   
Sbjct: 27  EYLRRVQIEAARCPDVVIAQID---PKKLRKKQTVSISLSGCQPAPDGYSPSLRWQQQQ- 82

Query: 277 LINEFQELRAAI----GKIKSEKLTNVYKYPDISDEKFWLSFCLGQ-FYAD---GIEDGS 432
            + +F  +R ++    G  +S+ L +    P   DE+ W  FCLG+  Y+D    +   S
Sbjct: 83  -VAQFSAVRQSLHKHRGHWRSQPLDSNVTMPSTEDEESWKKFCLGERLYSDLAAALNSES 141

Query: 433 Q----------CEPIVSVICELSQNQVIKLFGYLATG--NIPFTHIMGRWIYALLAVIFF 576
           Q            P++S++  +SQ  V  +  YL        FT  +GRW+YALLA +  
Sbjct: 142 QHPGIDYIKVGFPPLLSIVSRMSQATVTSVLEYLVNWFEERNFTPELGRWLYALLACLEK 201

Query: 577 PLDNDAVFSLRSIARNMMHLIKNYDGSDPSLVNSMNSIIVIVTCVFKQMDL 729
           PL  +A   +R +AR    +    +  +   V+ +N  I +V   F+Q DL
Sbjct: 202 PLLPEAHSLIRQLARRCSQIRAGVEHKEDDRVSPLNLFICLVGRYFEQRDL 252
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
          Length = 2142

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = +1

Query: 370 EKFWLSFCLGQFYADGIEDGSQCEPIVSVICELS-----QNQVIKLFGY 501
           + +WL  CL +FY D +   S+   ++ ++ + +     +NQ++ L GY
Sbjct: 269 DAYWLQRCLSKFYKDAMVSQSKAADVLKILKDAADDRDCENQLVLLLGY 317
>sp|O42649|SMC3_SCHPO Structural maintenance of chromosome 3 (Cohesin complex Psm3 subunit)
          Length = 1194

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +1

Query: 94   ANDYLLSVRYENKNLPDIVIKEVKNVTPKNFGLTHSMASLIIHKDEVDNQKNALFFEKNN 273
            AND    +  E   L    ++ +K+++ +   L+H   ++I  +  ++ +K AL +E N 
Sbjct: 764  ANDLKSELSSEMDELDPKDVEALKSLSGQIENLSHEFDAIIKERAHIEARKTALEYELNT 823

Query: 274  SLINEFQELRAAIG---KIKSEKLTNV 345
            +L      L+A IG   +I   +L +V
Sbjct: 824  NLYLRRNPLKAEIGSDNRIDESELNSV 850
>sp|Q6P4P1|SPA3A_MOUSE Serine protease inhibitor A3A precursor (Serpin A3A)
          Length = 422

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +1

Query: 133 NLPDIVIKEVKNVTPKNFGLTHSMASLIIHKDEVD-NQKNALFFEKNNSLINEFQELRAA 309
           NLP+    ++     +NFG  H +  LI  +++V  N  NALF +K+  ++ EF+E   A
Sbjct: 106 NLPETPEADIH----QNFG--HLLQMLIQPENQVQINAGNALFIDKHLQILTEFKEKARA 159

Query: 310 IGKIKSEKLTNVYKYP 357
           +   K+E  T  ++ P
Sbjct: 160 L--YKAEAFTTDFQRP 173
>sp|P45354|HXUA2_HAEIN Heme/hemopexin-binding protein precursor (Heme:hemopexin
           utilization protein A)
          Length = 928

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 121 YENKNLPDIVIKEVK-NVTPKNFGLTHSMASLIIHKDEVDNQKNALFFEKNNS 276
           +  KN     IK+ + N++  N  L +    L+  K ++DN K  + F+K+NS
Sbjct: 609 FATKNTGRSTIKDTEINISNSNINLKNGFVHLLAEKIKLDNSKIDITFDKDNS 661
>sp|P47386|Y140_MYCGE Hypothetical ATP-binding protein MG140
          Length = 1113

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 26/115 (22%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
 Frame = +1

Query: 61   DKFKKDSQFSSANDYLLSVRYENKNLPDI--VIKEVKNVTPKNFGLTHSMASLIIHKDEV 234
            +K   D +    +D +  +   N+NL +   V++ ++ +T  N     S+  +  +K++ 
Sbjct: 805  NKANADQRVFIVHDVIDGIWKNNRNLQEARDVVQRLEQLTTTN-DYKKSLGVICFNKNQA 863

Query: 235  DNQKNALFFEKNNSLINEFQELRAAIGKIKSEKLTNVYKYPDISDEKFWLSFCLG 399
            D  +  L  ++NN L+NE++E +  +G+ +   + N+       DE+  + F LG
Sbjct: 864  DLIEY-LIDKQNNPLLNEWRERQNDVGEYEGLFVKNIENVQ--GDERDIIIFSLG 915
>sp|P57351|PUR8_BUCAI Adenylosuccinate lyase (Adenylosuccinase) (ASL)
          Length = 456

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 25  TAAKFFYVEGEYDKFKKDSQFSSANDYLLSVRYENKNLPDIVIKEVKNVTPKNF 186
           T  + + ++  Y+K KK ++    N  ++     + N+P+   K +KN+TP N+
Sbjct: 391 TIMRRYGIKNAYEKLKKLTRGKEINRNVIHTFISSLNIPEEEKKRLKNMTPFNY 444
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,868,269
Number of Sequences: 369166
Number of extensions: 1434609
Number of successful extensions: 3678
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3669
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)