Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02568
(616 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09346|YRR5_CAEEL Hypothetical protein R144.5 in chromos... 31 2.9
sp|P76072|STFR_ECOLI Side tail fiber protein homolog from l... 31 2.9
sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion ... 31 2.9
sp|Q92SK7|UBIE_RHIME Ubiquinone/menaquinone biosynthesis me... 30 3.8
sp|Q09706|YA2G_SCHPO Hypothetical protein C2F7.16c in chrom... 30 4.9
sp|Q8UIH5|UBIE_AGRT5 Ubiquinone/menaquinone biosynthesis me... 30 4.9
sp|Q9UPV9|OI106_HUMAN 106 kDa O-GlcNAc transferase-interact... 30 4.9
sp|P50797|VL2_HPV23 Minor capsid protein L2 30 6.4
sp|P49303|POLG_FMDVZ Genome polyprotein [Contains: Leader p... 30 6.4
sp|P36005|KKQ1_YEAST Probable serine/threonine-protein kina... 29 8.4
>sp|Q09346|YRR5_CAEEL Hypothetical protein R144.5 in chromosome III
Length = 511
Score = 30.8 bits (68), Expect = 2.9
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Frame = +1
Query: 256 SPRGENEFNIEELFGEGLNWAGCTIISLL---------GQQKRFEALDIGGHLMRVQKSD 408
S + +N+ N EE E G I LL +Q++ D+ G L RV +
Sbjct: 300 SGKSDNDKNGEETLKEVTGHLGDVIFPLLCGEDLVVCGAEQRKSTVEDMLGKLSRVVpre 359
Query: 409 QKTDTSENISLERLANRI 462
+ ENI +E+ NRI
Sbjct: 360 SARNVEENIKIEKDPNRI 377
>sp|P76072|STFR_ECOLI Side tail fiber protein homolog from lambdoid prophage Rac
Length = 1120
Score = 30.8 bits (68), Expect = 2.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 584 SWYIGVGKCRTASLIAAYRSTGYKYR 507
++Y GVG CRT + A YR+ G YR
Sbjct: 853 NFYTGVGSCRTLQMKAHYRNGGLFYR 878
>sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 (Cyclic
nucleotide-and calmodulin-regulated ion channel 10)
(CaM-regulated potassium ion channel)
Length = 711
Score = 30.8 bits (68), Expect = 2.9
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 14/106 (13%)
Frame = +1
Query: 214 EFHRVWSAVQFVFC--------SPRGEN----EFNIEELFGEGLNWAGCTIISLL--GQQ 351
E H W +F +C S G+N +F E +F + +G + +LL Q
Sbjct: 334 ESHDFWK--KFFYCFWWGLRNLSALGQNLQTSKFVGEIIFAISICISGLVLFALLIGNMQ 391
Query: 352 KRFEALDIGGHLMRVQKSDQKTDTSENISLERLANRIRRFNMLNSQ 489
K E+ + MRV+K D + S + E L RIRR+ Q
Sbjct: 392 KYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQ 437
>sp|Q92SK7|UBIE_RHIME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
Length = 258
Score = 30.4 bits (67), Expect = 3.8
Identities = 17/88 (19%), Positives = 36/88 (40%)
Frame = +1
Query: 133 GRAEYIGANIWQGIRPNNEVMEVHECTEFHRVWSAVQFVFCSPRGENEFNIEELFGEGLN 312
G + + +++ + ++M HRVW +P G ++ + ++ G G
Sbjct: 24 GEKQPLVNDVFHKVAKRYDIMNDVMSAGLHRVWKDAMIAALNPPGREDYRVLDVAG-GTG 82
Query: 313 WAGCTIISLLGQQKRFEALDIGGHLMRV 396
I+ G++ LDI G ++ V
Sbjct: 83 DIAFRIVERSGRKAHATVLDINGSMLSV 110
>sp|Q09706|YA2G_SCHPO Hypothetical protein C2F7.16c in chromosome I
Length = 1369
Score = 30.0 bits (66), Expect = 4.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 469 ICESDWRGARVKYSRMYLFSDLTSALASNAHRYRVPR 359
+CE WRG +R++ F DLT R VPR
Sbjct: 688 LCEQTWRGKDYSNARVHDFFDLTEPYKDMYDRLAVPR 724
>sp|Q8UIH5|UBIE_AGRT5 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
Length = 259
Score = 30.0 bits (66), Expect = 4.9
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = +1
Query: 130 EGRAEYIGANIWQGIRPNNEVMEVHECTEFHRVWSAVQFVFCSPRGENEFNIEELFGEGL 309
EG+ + + ++ + ++M HR+W SPR + + I ++ G G
Sbjct: 24 EGKKQGLVNEVFHKVAKRYDIMNDVMSAGLHRLWKDAMVSALSPRKDPSYKILDVAG-GT 82
Query: 310 NWAGCTIISLLGQQKRFEALDIGGHLMRV-QKSDQKTDTSENIS 438
II + LDI G ++ V ++ K S+N++
Sbjct: 83 GDVAFRIIEASNRLAHATVLDINGSMLAVGEERAAKKKLSDNLT 126
>sp|Q9UPV9|OI106_HUMAN 106 kDa O-GlcNAc transferase-interacting protein
Length = 953
Score = 30.0 bits (66), Expect = 4.9
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Frame = +1
Query: 352 KRFEALDIGGHLMRVQKSDQKTDTSENISLERLANRI-------------RRFNMLNSQI 492
K F LD+ + ++ DT ++ISL RLA + + NS
Sbjct: 610 KGFRTLDVDLDEVYCLNDFEEDDTGDHISLPRLATSTPVQHPETSAHHPGKCMSQTNSTF 669
Query: 493 FATLNRYLYPVDRYAAMSEAVRHFPTPMYQESSSL 597
T R L+P D ++ ++ PTP +S L
Sbjct: 670 TFTTCRILHPSDELTRVTPSLNSAPTPACGSTSHL 704
>sp|P50797|VL2_HPV23 Minor capsid protein L2
Length = 519
Score = 29.6 bits (65), Expect = 6.4
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 375 DIECLEPFLLTQ*RYNGAPRPIQTFTEKFFNIELVFSTRRAENKLYSGP 229
D+E ++ + T YN A + E+F N +LVF T + YS P
Sbjct: 403 DVEAIQDTIDTADDYNSADLLLDNAIEEFNNSQLVFGTSDRSSSAYSIP 451
>sp|P49303|POLG_FMDVZ Genome polyprotein [Contains: Leader protease (P20A); Coat protein
VP4; Coat protein VP3; Coat protein VP2; Coat protein
VP1; Core protein X; Core protein p14; Core protein p41;
Core protein p19; Genome-linked protein VPg1;
Genome-linked protein VPg2; Genome-linked protein VPg3;
Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
polymerase ]
Length = 2336
Score = 29.6 bits (65), Expect = 6.4
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Frame = +1
Query: 85 LKTLQQCILTPDPDLEGRAEYIGANIWQGIRPNNEVMEVHECTEFHRVWSAVQ------- 243
+K +QQ + P P L+ N++Q ++ E +E+HE H+++ +
Sbjct: 1384 MKRMQQDMFKPQPPLQ--------NVYQLVQEVIERVELHEKVSSHQIFKQISIPSQKSV 1435
Query: 244 FVFCSPRGENEFNIEELFGEGL 309
F +G++E IE F EGL
Sbjct: 1436 LYFLIEKGQHEAAIE--FFEGL 1455
>sp|P36005|KKQ1_YEAST Probable serine/threonine-protein kinase YKL161C
Length = 433
Score = 29.3 bits (64), Expect = 8.4
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 319 GCTIISLLGQQKRFEALDIGGHLMRVQK--SDQKTDTSENISLERLANRIRRFNMLNSQI 492
GC + LLG++ FE D HL + + +T + I+ +++ N I +F + +
Sbjct: 220 GCILAELLGRKPMFEGKDYVDHLNHILQILGTPPEETLQEIASQKVYNYIFQFGNIPGRS 279
Query: 493 FATL 504
F ++
Sbjct: 280 FESI 283
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,535,122
Number of Sequences: 369166
Number of extensions: 1680899
Number of successful extensions: 5008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5007
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)