Planaria EST Database


DrC_02568

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02568
         (616 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09346|YRR5_CAEEL  Hypothetical protein R144.5 in chromos...    31   2.9  
sp|P76072|STFR_ECOLI  Side tail fiber protein homolog from l...    31   2.9  
sp|Q9LNJ0|CNG10_ARATH  Probable cyclic nucleotide-gated ion ...    31   2.9  
sp|Q92SK7|UBIE_RHIME  Ubiquinone/menaquinone biosynthesis me...    30   3.8  
sp|Q09706|YA2G_SCHPO  Hypothetical protein C2F7.16c in chrom...    30   4.9  
sp|Q8UIH5|UBIE_AGRT5  Ubiquinone/menaquinone biosynthesis me...    30   4.9  
sp|Q9UPV9|OI106_HUMAN  106 kDa O-GlcNAc transferase-interact...    30   4.9  
sp|P50797|VL2_HPV23  Minor capsid protein L2                       30   6.4  
sp|P49303|POLG_FMDVZ  Genome polyprotein [Contains: Leader p...    30   6.4  
sp|P36005|KKQ1_YEAST  Probable serine/threonine-protein kina...    29   8.4  
>sp|Q09346|YRR5_CAEEL Hypothetical protein R144.5 in chromosome III
          Length = 511

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
 Frame = +1

Query: 256 SPRGENEFNIEELFGEGLNWAGCTIISLL---------GQQKRFEALDIGGHLMRVQKSD 408
           S + +N+ N EE   E     G  I  LL          +Q++    D+ G L RV   +
Sbjct: 300 SGKSDNDKNGEETLKEVTGHLGDVIFPLLCGEDLVVCGAEQRKSTVEDMLGKLSRVVpre 359

Query: 409 QKTDTSENISLERLANRI 462
              +  ENI +E+  NRI
Sbjct: 360 SARNVEENIKIEKDPNRI 377
>sp|P76072|STFR_ECOLI Side tail fiber protein homolog from lambdoid prophage Rac
          Length = 1120

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 584 SWYIGVGKCRTASLIAAYRSTGYKYR 507
           ++Y GVG CRT  + A YR+ G  YR
Sbjct: 853 NFYTGVGSCRTLQMKAHYRNGGLFYR 878
>sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 (Cyclic
           nucleotide-and calmodulin-regulated ion channel 10)
           (CaM-regulated potassium ion channel)
          Length = 711

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 14/106 (13%)
 Frame = +1

Query: 214 EFHRVWSAVQFVFC--------SPRGEN----EFNIEELFGEGLNWAGCTIISLL--GQQ 351
           E H  W   +F +C        S  G+N    +F  E +F   +  +G  + +LL    Q
Sbjct: 334 ESHDFWK--KFFYCFWWGLRNLSALGQNLQTSKFVGEIIFAISICISGLVLFALLIGNMQ 391

Query: 352 KRFEALDIGGHLMRVQKSDQKTDTSENISLERLANRIRRFNMLNSQ 489
           K  E+  +    MRV+K D +   S  +  E L  RIRR+     Q
Sbjct: 392 KYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQ 437
>sp|Q92SK7|UBIE_RHIME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
          Length = 258

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 17/88 (19%), Positives = 36/88 (40%)
 Frame = +1

Query: 133 GRAEYIGANIWQGIRPNNEVMEVHECTEFHRVWSAVQFVFCSPRGENEFNIEELFGEGLN 312
           G  + +  +++  +    ++M        HRVW        +P G  ++ + ++ G G  
Sbjct: 24  GEKQPLVNDVFHKVAKRYDIMNDVMSAGLHRVWKDAMIAALNPPGREDYRVLDVAG-GTG 82

Query: 313 WAGCTIISLLGQQKRFEALDIGGHLMRV 396
                I+   G++     LDI G ++ V
Sbjct: 83  DIAFRIVERSGRKAHATVLDINGSMLSV 110
>sp|Q09706|YA2G_SCHPO Hypothetical protein C2F7.16c in chromosome I
          Length = 1369

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 469 ICESDWRGARVKYSRMYLFSDLTSALASNAHRYRVPR 359
           +CE  WRG     +R++ F DLT        R  VPR
Sbjct: 688 LCEQTWRGKDYSNARVHDFFDLTEPYKDMYDRLAVPR 724
>sp|Q8UIH5|UBIE_AGRT5 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
          Length = 259

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
 Frame = +1

Query: 130 EGRAEYIGANIWQGIRPNNEVMEVHECTEFHRVWSAVQFVFCSPRGENEFNIEELFGEGL 309
           EG+ + +   ++  +    ++M        HR+W        SPR +  + I ++ G G 
Sbjct: 24  EGKKQGLVNEVFHKVAKRYDIMNDVMSAGLHRLWKDAMVSALSPRKDPSYKILDVAG-GT 82

Query: 310 NWAGCTIISLLGQQKRFEALDIGGHLMRV-QKSDQKTDTSENIS 438
                 II    +      LDI G ++ V ++   K   S+N++
Sbjct: 83  GDVAFRIIEASNRLAHATVLDINGSMLAVGEERAAKKKLSDNLT 126
>sp|Q9UPV9|OI106_HUMAN 106 kDa O-GlcNAc transferase-interacting protein
          Length = 953

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
 Frame = +1

Query: 352 KRFEALDIGGHLMRVQKSDQKTDTSENISLERLANRI-------------RRFNMLNSQI 492
           K F  LD+    +      ++ DT ++ISL RLA                +  +  NS  
Sbjct: 610 KGFRTLDVDLDEVYCLNDFEEDDTGDHISLPRLATSTPVQHPETSAHHPGKCMSQTNSTF 669

Query: 493 FATLNRYLYPVDRYAAMSEAVRHFPTPMYQESSSL 597
             T  R L+P D    ++ ++   PTP    +S L
Sbjct: 670 TFTTCRILHPSDELTRVTPSLNSAPTPACGSTSHL 704
>sp|P50797|VL2_HPV23 Minor capsid protein L2
          Length = 519

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 375 DIECLEPFLLTQ*RYNGAPRPIQTFTEKFFNIELVFSTRRAENKLYSGP 229
           D+E ++  + T   YN A   +    E+F N +LVF T    +  YS P
Sbjct: 403 DVEAIQDTIDTADDYNSADLLLDNAIEEFNNSQLVFGTSDRSSSAYSIP 451
>sp|P49303|POLG_FMDVZ Genome polyprotein [Contains: Leader protease (P20A); Coat protein
            VP4; Coat protein VP3; Coat protein VP2; Coat protein
            VP1; Core protein X; Core protein p14; Core protein p41;
            Core protein p19; Genome-linked protein VPg1;
            Genome-linked protein VPg2; Genome-linked protein VPg3;
            Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
            polymerase ]
          Length = 2336

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
 Frame = +1

Query: 85   LKTLQQCILTPDPDLEGRAEYIGANIWQGIRPNNEVMEVHECTEFHRVWSAVQ------- 243
            +K +QQ +  P P L+        N++Q ++   E +E+HE    H+++  +        
Sbjct: 1384 MKRMQQDMFKPQPPLQ--------NVYQLVQEVIERVELHEKVSSHQIFKQISIPSQKSV 1435

Query: 244  FVFCSPRGENEFNIEELFGEGL 309
              F   +G++E  IE  F EGL
Sbjct: 1436 LYFLIEKGQHEAAIE--FFEGL 1455
>sp|P36005|KKQ1_YEAST Probable serine/threonine-protein kinase YKL161C
          Length = 433

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 319 GCTIISLLGQQKRFEALDIGGHLMRVQK--SDQKTDTSENISLERLANRIRRFNMLNSQI 492
           GC +  LLG++  FE  D   HL  + +       +T + I+ +++ N I +F  +  + 
Sbjct: 220 GCILAELLGRKPMFEGKDYVDHLNHILQILGTPPEETLQEIASQKVYNYIFQFGNIPGRS 279

Query: 493 FATL 504
           F ++
Sbjct: 280 FESI 283
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,535,122
Number of Sequences: 369166
Number of extensions: 1680899
Number of successful extensions: 5008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5007
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)