Planaria EST Database


DrC_02566

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02566
         (202 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P96314|RF2_BACFI  Peptide chain release factor 2 (RF-2)         33   0.27 
sp|Q5XG71|DRIM_MOUSE  Down-regulated in metastasis homolog         32   0.46 
sp|Q6MSR0|SYL_MYCMS  Leucyl-tRNA synthetase (Leucine--tRNA l...    32   0.46 
sp|O75691|DRIM_HUMAN  Down-regulated in metastasis protein (...    32   0.60 
sp|Q87QW2|MUKB_VIBPA  Chromosome partition protein mukB (Str...    30   1.3  
sp|Q97WH0|RAD50_SULSO  DNA double-strand break repair rad50 ...    30   2.3  
sp|Q9ZDB3|DPO3B_RICPR  DNA polymerase III, beta chain              29   3.0  
sp|P36112|YKZ6_YEAST  Hypothetical 61.1 kDa protein in YPT52...    29   3.0  
sp|Q9W539|HR4_DROME  Hormone receptor 4 (dHR4)                     28   5.1  
sp|Q58221|Y811_METJA  Hypothetical protein MJ0811                  28   5.1  
>sp|P96314|RF2_BACFI Peptide chain release factor 2 (RF-2)
          Length = 294

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +3

Query: 12  EGLTAIMNELNASIQFLN---KVRKSNENMQRLYEVLKKFIENLQVTNMEAKVKELLSNC 182
           E    ++NE N   + +N   ++ +  EN++  YE++K+  +      +EA VKEL+S  
Sbjct: 50  EAAQTVINESNGLKEQVNVFLELEEKYENLEVSYELVKEEADEELEKELEAGVKELISRL 109

Query: 183 NSDFE 197
           N DFE
Sbjct: 110 N-DFE 113
>sp|Q5XG71|DRIM_MOUSE Down-regulated in metastasis homolog
          Length = 2788

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 9    HEGLTAIMNELNASIQFLNKVRKSNENMQR-LYEVLKKFIENLQVTNMEAKVKELLSNCN 185
            HE   A+  E     Q L+KV ++  +     YE+L KF+   QVT +   +KE+L N  
Sbjct: 1934 HELFGALAEEKEVK-QILSKVMEARRSKSYDSYEILGKFVGKQQVTKLILPLKEILQNTT 1992

Query: 186  S 188
            S
Sbjct: 1993 S 1993
>sp|Q6MSR0|SYL_MYCMS Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
          Length = 804

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +3

Query: 12  EGLTAIMNELNASIQFLNKVRKSNENMQRL----YEVLKKFIENLQVTNMEAKVKELLSN 179
           +GL A +  LN   + +NK+  SN N  +L     +V+KK  + +Q       + +L+  
Sbjct: 622 DGLDASLKWLNRCYRMINKIEFSNTNNHKLDYVYNDVVKKVTQMIQELKFNTAISQLMVL 681

Query: 180 CNSDFEE 200
            N+ ++E
Sbjct: 682 VNAIYKE 688
>sp|O75691|DRIM_HUMAN Down-regulated in metastasis protein (Key-1A6 protein) (Novel
            nucleolar protein 73) (NNP73)
          Length = 2785

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 9    HEGLTAIMNELNASIQFLNKVRKSNENMQR-LYEVLKKFIENLQVTNMEAKVKELLSNCN 185
            HE   A+  E     Q L+KV ++  +     YE+L KF+   QVT +   +KE+L N  
Sbjct: 1934 HELFGAVAEEKEVK-QILSKVMEARRSKSYDSYEILGKFVGKDQVTKLILPLKEILQNTT 1992

Query: 186  S 188
            S
Sbjct: 1993 S 1993
>sp|Q87QW2|MUKB_VIBPA Chromosome partition protein mukB (Structural maintenance of
           chromosome related protein)
          Length = 1487

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 6   RHEGLTAIMNELNASIQFLNKVRKSNENMQRLYEVLKKFIENLQVTNMEAKVKELLSN 179
           R + L  + NE    ++   K    ++ MQRLY+   +F+ N      EA  ++ L+N
Sbjct: 784 REQRLELLRNEREEVVEKHAKAAFDSQKMQRLYQAFNQFVANHIQVAFEADPEQALAN 841
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
          Length = 864

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 17/54 (31%), Positives = 35/54 (64%)
 Frame = +3

Query: 30  MNELNASIQFLNKVRKSNENMQRLYEVLKKFIENLQVTNMEAKVKELLSNCNSD 191
           +NELN SI+   ++RK  ENM +L + + + +ENL+   ++ +  E+L+  +++
Sbjct: 251 LNELNRSIE---ELRKQTENMDQLEKEINE-LENLRNIKLKFEKYEVLAKSHTE 300
>sp|Q9ZDB3|DPO3B_RICPR DNA polymerase III, beta chain
          Length = 381

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 202 NSSKSELQFDSNSLTFASIFVTCKFSINFFNTSYNL 95
           +S K E+ F  +   FA I  + KFSI+   T YNL
Sbjct: 120 DSIKPEVSFKISCADFAKIIESTKFSISLDETRYNL 155
>sp|P36112|YKZ6_YEAST Hypothetical 61.1 kDa protein in YPT52-DBP7 intergenic region
          Length = 540

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 12  EGLTAIMNELNASIQFLNKVRKSNENMQRLYEVLKKFIENLQVTNMEAKVKELLSNCN 185
           +GL A  N+L + +   ++ R+SN     + ++L     N++  N + ++KE++ + N
Sbjct: 97  DGLKAKSNDLLSGLTGSSQTRRSNRENIEVKKILSLEPLNIETENSDPQLKEIIGSLN 154

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = +3

Query: 30  MNELNASI--QFLNKVRKSNENM----QRLYEVLKKFIENLQVTNMEAKVKELLSNCNSD 191
           +N+ N SI     N ++KSN+NM     +L E LK+ + N  +     +  E+++  N+ 
Sbjct: 160 LNDSNLSIPESEFNSIKKSNQNMLTNLSQLNETLKEALSNYMI----QRTSEVITELNTQ 215

Query: 192 FE 197
           +E
Sbjct: 216 YE 217
>sp|Q9W539|HR4_DROME Hormone receptor 4 (dHR4)
          Length = 1518

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 60   LNKVRKSNENMQRLYEVLKKFIENLQVTNMEAKVKELLSN 179
            LNK  +     +R  +VL+ +++N    N +A++ ELLS+
Sbjct: 1450 LNKEVELESIQERYVQVLRSYLQNSSPQNPQARLSELLSH 1489
>sp|Q58221|Y811_METJA Hypothetical protein MJ0811
          Length = 439

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 30  MNELNASIQFLNKVRKSNENMQ--RLYEVLKKFIENLQVTNMEAKVKELLSNCNSDFEE 200
           ++E+NA    +    K  EN++  +L + LKKF    +   +E K+KE+  N   D  E
Sbjct: 90  LDEVNAGTATIMFCEKFFENLKLAKLNKELKKFASEGKGEGLEDKLKEIAKNTMKDIAE 148
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,058,830
Number of Sequences: 369166
Number of extensions: 217034
Number of successful extensions: 1032
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 68,354,980
effective HSP length: 38
effective length of database: 61,335,050
effective search space used: 1717381400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)