Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02566
(202 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P96314|RF2_BACFI Peptide chain release factor 2 (RF-2) 33 0.27
sp|Q5XG71|DRIM_MOUSE Down-regulated in metastasis homolog 32 0.46
sp|Q6MSR0|SYL_MYCMS Leucyl-tRNA synthetase (Leucine--tRNA l... 32 0.46
sp|O75691|DRIM_HUMAN Down-regulated in metastasis protein (... 32 0.60
sp|Q87QW2|MUKB_VIBPA Chromosome partition protein mukB (Str... 30 1.3
sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ... 30 2.3
sp|Q9ZDB3|DPO3B_RICPR DNA polymerase III, beta chain 29 3.0
sp|P36112|YKZ6_YEAST Hypothetical 61.1 kDa protein in YPT52... 29 3.0
sp|Q9W539|HR4_DROME Hormone receptor 4 (dHR4) 28 5.1
sp|Q58221|Y811_METJA Hypothetical protein MJ0811 28 5.1
>sp|P96314|RF2_BACFI Peptide chain release factor 2 (RF-2)
Length = 294
Score = 32.7 bits (73), Expect = 0.27
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +3
Query: 12 EGLTAIMNELNASIQFLN---KVRKSNENMQRLYEVLKKFIENLQVTNMEAKVKELLSNC 182
E ++NE N + +N ++ + EN++ YE++K+ + +EA VKEL+S
Sbjct: 50 EAAQTVINESNGLKEQVNVFLELEEKYENLEVSYELVKEEADEELEKELEAGVKELISRL 109
Query: 183 NSDFE 197
N DFE
Sbjct: 110 N-DFE 113
>sp|Q5XG71|DRIM_MOUSE Down-regulated in metastasis homolog
Length = 2788
Score = 32.0 bits (71), Expect = 0.46
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 9 HEGLTAIMNELNASIQFLNKVRKSNENMQR-LYEVLKKFIENLQVTNMEAKVKELLSNCN 185
HE A+ E Q L+KV ++ + YE+L KF+ QVT + +KE+L N
Sbjct: 1934 HELFGALAEEKEVK-QILSKVMEARRSKSYDSYEILGKFVGKQQVTKLILPLKEILQNTT 1992
Query: 186 S 188
S
Sbjct: 1993 S 1993
>sp|Q6MSR0|SYL_MYCMS Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
Length = 804
Score = 32.0 bits (71), Expect = 0.46
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +3
Query: 12 EGLTAIMNELNASIQFLNKVRKSNENMQRL----YEVLKKFIENLQVTNMEAKVKELLSN 179
+GL A + LN + +NK+ SN N +L +V+KK + +Q + +L+
Sbjct: 622 DGLDASLKWLNRCYRMINKIEFSNTNNHKLDYVYNDVVKKVTQMIQELKFNTAISQLMVL 681
Query: 180 CNSDFEE 200
N+ ++E
Sbjct: 682 VNAIYKE 688
>sp|O75691|DRIM_HUMAN Down-regulated in metastasis protein (Key-1A6 protein) (Novel
nucleolar protein 73) (NNP73)
Length = 2785
Score = 31.6 bits (70), Expect = 0.60
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 9 HEGLTAIMNELNASIQFLNKVRKSNENMQR-LYEVLKKFIENLQVTNMEAKVKELLSNCN 185
HE A+ E Q L+KV ++ + YE+L KF+ QVT + +KE+L N
Sbjct: 1934 HELFGAVAEEKEVK-QILSKVMEARRSKSYDSYEILGKFVGKDQVTKLILPLKEILQNTT 1992
Query: 186 S 188
S
Sbjct: 1993 S 1993
>sp|Q87QW2|MUKB_VIBPA Chromosome partition protein mukB (Structural maintenance of
chromosome related protein)
Length = 1487
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 6 RHEGLTAIMNELNASIQFLNKVRKSNENMQRLYEVLKKFIENLQVTNMEAKVKELLSN 179
R + L + NE ++ K ++ MQRLY+ +F+ N EA ++ L+N
Sbjct: 784 REQRLELLRNEREEVVEKHAKAAFDSQKMQRLYQAFNQFVANHIQVAFEADPEQALAN 841
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
Length = 864
Score = 29.6 bits (65), Expect = 2.3
Identities = 17/54 (31%), Positives = 35/54 (64%)
Frame = +3
Query: 30 MNELNASIQFLNKVRKSNENMQRLYEVLKKFIENLQVTNMEAKVKELLSNCNSD 191
+NELN SI+ ++RK ENM +L + + + +ENL+ ++ + E+L+ +++
Sbjct: 251 LNELNRSIE---ELRKQTENMDQLEKEINE-LENLRNIKLKFEKYEVLAKSHTE 300
>sp|Q9ZDB3|DPO3B_RICPR DNA polymerase III, beta chain
Length = 381
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 202 NSSKSELQFDSNSLTFASIFVTCKFSINFFNTSYNL 95
+S K E+ F + FA I + KFSI+ T YNL
Sbjct: 120 DSIKPEVSFKISCADFAKIIESTKFSISLDETRYNL 155
>sp|P36112|YKZ6_YEAST Hypothetical 61.1 kDa protein in YPT52-DBP7 intergenic region
Length = 540
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +3
Query: 12 EGLTAIMNELNASIQFLNKVRKSNENMQRLYEVLKKFIENLQVTNMEAKVKELLSNCN 185
+GL A N+L + + ++ R+SN + ++L N++ N + ++KE++ + N
Sbjct: 97 DGLKAKSNDLLSGLTGSSQTRRSNRENIEVKKILSLEPLNIETENSDPQLKEIIGSLN 154
Score = 29.3 bits (64), Expect = 3.0
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Frame = +3
Query: 30 MNELNASI--QFLNKVRKSNENM----QRLYEVLKKFIENLQVTNMEAKVKELLSNCNSD 191
+N+ N SI N ++KSN+NM +L E LK+ + N + + E+++ N+
Sbjct: 160 LNDSNLSIPESEFNSIKKSNQNMLTNLSQLNETLKEALSNYMI----QRTSEVITELNTQ 215
Query: 192 FE 197
+E
Sbjct: 216 YE 217
>sp|Q9W539|HR4_DROME Hormone receptor 4 (dHR4)
Length = 1518
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 60 LNKVRKSNENMQRLYEVLKKFIENLQVTNMEAKVKELLSN 179
LNK + +R +VL+ +++N N +A++ ELLS+
Sbjct: 1450 LNKEVELESIQERYVQVLRSYLQNSSPQNPQARLSELLSH 1489
>sp|Q58221|Y811_METJA Hypothetical protein MJ0811
Length = 439
Score = 28.5 bits (62), Expect = 5.1
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 30 MNELNASIQFLNKVRKSNENMQ--RLYEVLKKFIENLQVTNMEAKVKELLSNCNSDFEE 200
++E+NA + K EN++ +L + LKKF + +E K+KE+ N D E
Sbjct: 90 LDEVNAGTATIMFCEKFFENLKLAKLNKELKKFASEGKGEGLEDKLKEIAKNTMKDIAE 148
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,058,830
Number of Sequences: 369166
Number of extensions: 217034
Number of successful extensions: 1032
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 68,354,980
effective HSP length: 38
effective length of database: 61,335,050
effective search space used: 1717381400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)