Planaria EST Database


DrC_02561

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02561
         (257 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q59053|Y1659_METJA  Hypothetical ATP-binding protein MJ1659     30   1.3  
sp|P57189|Y087_BUCAI  Hypothetical protein BU087                   30   1.7  
sp|Q9Y7J9|MCP5_SCHPO  Meiotic coiled-coil protein 5                28   5.0  
sp|P17214|EST1_YEAST  Telomere elongation protein                  28   5.0  
sp|Q59035|YG41_METJA  Hypothetical protein MJ1641                  28   6.5  
sp|P59420|SYA_BUCBP  Alanyl-tRNA synthetase (Alanine--tRNA l...    28   6.5  
>sp|Q59053|Y1659_METJA Hypothetical ATP-binding protein MJ1659
          Length = 361

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +3

Query: 63  NLWYRAFK*INLEK--LFNHILSN---RRTYVYFYINFADHFHEK 182
           NL Y  +  IN  K  L  HI+ N   R  YV FYIN  +HF  K
Sbjct: 26  NLIYFIYGPINSGKTTLIKHIIENKLDRDKYVVFYINLREHFISK 70
>sp|P57189|Y087_BUCAI Hypothetical protein BU087
          Length = 970

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 16/92 (17%)
 Frame = +3

Query: 15  RRQFSIAIK*SSRLVHNL------------WYRAFK*INLEKLFNHILSNRRTYVYFY-- 152
           ++ FS  +K S+RL  NL            W+  FK IN+   +  + + +  ++++Y  
Sbjct: 617 KQNFSFLLK-SNRLHINLIINGAFNNKTGHWHGFFKKINIRTFWGQVTAKKNNFIHYYDS 675

Query: 153 INFADHFHEKNL*KKKSMNK--RNTQQHFFEI 242
            N   +F++K++ K+   +    N +  FF +
Sbjct: 676 HNSITNFYQKSIKKRNCFSSFLYNVKMSFFNL 707
>sp|Q9Y7J9|MCP5_SCHPO Meiotic coiled-coil protein 5
          Length = 968

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 30   IAIK*SSRLVHNLWYRAFK*INLEKLFN 113
            I +K  S+ +HN+W +A K IN + +F+
Sbjct: 936  IVLKAKSKKIHNIWVQAIKQINHKAIFD 963
>sp|P17214|EST1_YEAST Telomere elongation protein
          Length = 699

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 148 KYT*VLRLDKIWLNNFSKLIHLNARYHKLCTNLELYL 38
           +Y  ++RL   W+ ++  ++    R+ K CT+  L L
Sbjct: 431 RYLAIIRLLMCWIKSYRSILQYTHRHRKFCTSFALLL 467
>sp|Q59035|YG41_METJA Hypothetical protein MJ1641
          Length = 287

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 57  VHNLWYRAFK*INLEKLFNHILSNRRTYVYFYINF 161
           +H L  +  K  NLE L N +L N+R  + FY+ F
Sbjct: 213 IHELEEKLHK--NLELLLNKVLENKREDLNFYVQF 245
>sp|P59420|SYA_BUCBP Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
          Length = 880

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 48  SRLVHNLWYRAFK*INLEKLFNHILSNRRTYVYFYINFADHF-HEKNL*KKKSMNKRNTQ 224
           S ++HN   +    +N  K+F +I+ +  T    Y+N  D    E NL K+KS+   +T 
Sbjct: 514 SGIIHNKTGKFI--VNCTKMFGNIIGHVGTLASGYLNIHDTVCAEINLPKRKSIQINHTA 571

Query: 225 QHFFEINI 248
            H    ++
Sbjct: 572 THLLHASL 579
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,090,401
Number of Sequences: 369166
Number of extensions: 405856
Number of successful extensions: 930
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)