Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02561
(257 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q59053|Y1659_METJA Hypothetical ATP-binding protein MJ1659 30 1.3
sp|P57189|Y087_BUCAI Hypothetical protein BU087 30 1.7
sp|Q9Y7J9|MCP5_SCHPO Meiotic coiled-coil protein 5 28 5.0
sp|P17214|EST1_YEAST Telomere elongation protein 28 5.0
sp|Q59035|YG41_METJA Hypothetical protein MJ1641 28 6.5
sp|P59420|SYA_BUCBP Alanyl-tRNA synthetase (Alanine--tRNA l... 28 6.5
>sp|Q59053|Y1659_METJA Hypothetical ATP-binding protein MJ1659
Length = 361
Score = 30.4 bits (67), Expect = 1.3
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +3
Query: 63 NLWYRAFK*INLEK--LFNHILSN---RRTYVYFYINFADHFHEK 182
NL Y + IN K L HI+ N R YV FYIN +HF K
Sbjct: 26 NLIYFIYGPINSGKTTLIKHIIENKLDRDKYVVFYINLREHFISK 70
>sp|P57189|Y087_BUCAI Hypothetical protein BU087
Length = 970
Score = 30.0 bits (66), Expect = 1.7
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 16/92 (17%)
Frame = +3
Query: 15 RRQFSIAIK*SSRLVHNL------------WYRAFK*INLEKLFNHILSNRRTYVYFY-- 152
++ FS +K S+RL NL W+ FK IN+ + + + + ++++Y
Sbjct: 617 KQNFSFLLK-SNRLHINLIINGAFNNKTGHWHGFFKKINIRTFWGQVTAKKNNFIHYYDS 675
Query: 153 INFADHFHEKNL*KKKSMNK--RNTQQHFFEI 242
N +F++K++ K+ + N + FF +
Sbjct: 676 HNSITNFYQKSIKKRNCFSSFLYNVKMSFFNL 707
>sp|Q9Y7J9|MCP5_SCHPO Meiotic coiled-coil protein 5
Length = 968
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 30 IAIK*SSRLVHNLWYRAFK*INLEKLFN 113
I +K S+ +HN+W +A K IN + +F+
Sbjct: 936 IVLKAKSKKIHNIWVQAIKQINHKAIFD 963
>sp|P17214|EST1_YEAST Telomere elongation protein
Length = 699
Score = 28.5 bits (62), Expect = 5.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 148 KYT*VLRLDKIWLNNFSKLIHLNARYHKLCTNLELYL 38
+Y ++RL W+ ++ ++ R+ K CT+ L L
Sbjct: 431 RYLAIIRLLMCWIKSYRSILQYTHRHRKFCTSFALLL 467
>sp|Q59035|YG41_METJA Hypothetical protein MJ1641
Length = 287
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 57 VHNLWYRAFK*INLEKLFNHILSNRRTYVYFYINF 161
+H L + K NLE L N +L N+R + FY+ F
Sbjct: 213 IHELEEKLHK--NLELLLNKVLENKREDLNFYVQF 245
>sp|P59420|SYA_BUCBP Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
Length = 880
Score = 28.1 bits (61), Expect = 6.5
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 48 SRLVHNLWYRAFK*INLEKLFNHILSNRRTYVYFYINFADHF-HEKNL*KKKSMNKRNTQ 224
S ++HN + +N K+F +I+ + T Y+N D E NL K+KS+ +T
Sbjct: 514 SGIIHNKTGKFI--VNCTKMFGNIIGHVGTLASGYLNIHDTVCAEINLPKRKSIQINHTA 571
Query: 225 QHFFEINI 248
H ++
Sbjct: 572 THLLHASL 579
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,090,401
Number of Sequences: 369166
Number of extensions: 405856
Number of successful extensions: 930
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)