Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02555
(461 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88874|CCNK_MOUSE Cyclin-K 51 1e-06
sp|O75909|CCNK_HUMAN Cyclin-K 51 1e-06
sp|O60563|CCNT1_HUMAN Cyclin-T1 (Cyclin-T) (CycT1) 28 9.9
sp|O60583|CCNT2_HUMAN Cyclin-T2 28 9.9
sp|Q8CP22|RECO_STAES DNA repair protein recO (Recombination... 28 9.9
sp|Q8HXN7|CCNT1_PANTR Cyclin-T1 (Cyclin-T) (CycT1) 28 9.9
sp|Q9QWV9|CCNT1_MOUSE Cyclin-T1 (Cyclin-T) (CycT1) 28 9.9
sp|Q9XT26|CCNT1_HORSE Cyclin-T1 (Cyclin-T) (CycT1) 28 9.9
>sp|O88874|CCNK_MOUSE Cyclin-K
Length = 554
Score = 51.2 bits (121), Expect = 1e-06
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +1
Query: 13 QKWWESFVEGMTIEVMEDICHQILDLYSDPK 105
++WWE FV+ + ++V+EDICHQILDLYS K
Sbjct: 232 RRWWEQFVQDVPVDVLEDICHQILDLYSQGK 262
>sp|O75909|CCNK_HUMAN Cyclin-K
Length = 357
Score = 51.2 bits (121), Expect = 1e-06
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +1
Query: 13 QKWWESFVEGMTIEVMEDICHQILDLYSDPK 105
++WWE FV+ + ++V+EDICHQILDLYS K
Sbjct: 232 RRWWEQFVQDVPVDVLEDICHQILDLYSQGK 262
>sp|O60563|CCNT1_HUMAN Cyclin-T1 (Cyclin-T) (CycT1)
Length = 726
Score = 28.1 bits (61), Expect = 9.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +1
Query: 10 GQKWWESFVEGMTIEVMEDICHQILDL 90
G+ WWE +T+E+++++ H+ L +
Sbjct: 218 GKHWWEYVDATVTLELLDELTHEFLQI 244
>sp|O60583|CCNT2_HUMAN Cyclin-T2
Length = 730
Score = 28.1 bits (61), Expect = 9.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +1
Query: 10 GQKWWESFVEGMTIEVMEDICHQILDL 90
G+ WWE +T+E+++++ H+ L +
Sbjct: 217 GKHWWEYVDPTVTLELLDELTHEFLQI 243
>sp|Q8CP22|RECO_STAES DNA repair protein recO (Recombination protein O)
sp|Q5HNY1|RECO_STAEQ DNA repair protein recO (Recombination protein O)
Length = 253
Score = 28.1 bits (61), Expect = 9.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 241 IQLANVLAGSNASKLNHLNIQGESLN 318
+ L N+L SK+NHLNIQ + LN
Sbjct: 193 LYLLNILQQLPISKMNHLNIQQDILN 218
>sp|Q8HXN7|CCNT1_PANTR Cyclin-T1 (Cyclin-T) (CycT1)
Length = 725
Score = 28.1 bits (61), Expect = 9.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +1
Query: 10 GQKWWESFVEGMTIEVMEDICHQILDL 90
G+ WWE +T+E+++++ H+ L +
Sbjct: 217 GKHWWEYVDATVTLELLDELTHEFLQI 243
>sp|Q9QWV9|CCNT1_MOUSE Cyclin-T1 (Cyclin-T) (CycT1)
Length = 724
Score = 28.1 bits (61), Expect = 9.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +1
Query: 10 GQKWWESFVEGMTIEVMEDICHQILDL 90
G+ WWE +T+E+++++ H+ L +
Sbjct: 218 GKHWWEYVDATVTLELLDELTHEFLQI 244
>sp|Q9XT26|CCNT1_HORSE Cyclin-T1 (Cyclin-T) (CycT1)
Length = 727
Score = 28.1 bits (61), Expect = 9.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +1
Query: 10 GQKWWESFVEGMTIEVMEDICHQILDL 90
G+ WWE +T+E+++++ H+ L +
Sbjct: 218 GKHWWEYVDATVTLELLDELTHEFLQI 244
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,084,150
Number of Sequences: 369166
Number of extensions: 633604
Number of successful extensions: 1077
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)