Planaria EST Database


DrC_02555

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02555
         (461 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O88874|CCNK_MOUSE  Cyclin-K                                     51   1e-06
sp|O75909|CCNK_HUMAN  Cyclin-K                                     51   1e-06
sp|O60563|CCNT1_HUMAN  Cyclin-T1 (Cyclin-T) (CycT1)                28   9.9  
sp|O60583|CCNT2_HUMAN  Cyclin-T2                                   28   9.9  
sp|Q8CP22|RECO_STAES  DNA repair protein recO (Recombination...    28   9.9  
sp|Q8HXN7|CCNT1_PANTR  Cyclin-T1 (Cyclin-T) (CycT1)                28   9.9  
sp|Q9QWV9|CCNT1_MOUSE  Cyclin-T1 (Cyclin-T) (CycT1)                28   9.9  
sp|Q9XT26|CCNT1_HORSE  Cyclin-T1 (Cyclin-T) (CycT1)                28   9.9  
>sp|O88874|CCNK_MOUSE Cyclin-K
          Length = 554

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 19/31 (61%), Positives = 26/31 (83%)
 Frame = +1

Query: 13  QKWWESFVEGMTIEVMEDICHQILDLYSDPK 105
           ++WWE FV+ + ++V+EDICHQILDLYS  K
Sbjct: 232 RRWWEQFVQDVPVDVLEDICHQILDLYSQGK 262
>sp|O75909|CCNK_HUMAN Cyclin-K
          Length = 357

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 19/31 (61%), Positives = 26/31 (83%)
 Frame = +1

Query: 13  QKWWESFVEGMTIEVMEDICHQILDLYSDPK 105
           ++WWE FV+ + ++V+EDICHQILDLYS  K
Sbjct: 232 RRWWEQFVQDVPVDVLEDICHQILDLYSQGK 262
>sp|O60563|CCNT1_HUMAN Cyclin-T1 (Cyclin-T) (CycT1)
          Length = 726

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 10  GQKWWESFVEGMTIEVMEDICHQILDL 90
           G+ WWE     +T+E+++++ H+ L +
Sbjct: 218 GKHWWEYVDATVTLELLDELTHEFLQI 244
>sp|O60583|CCNT2_HUMAN Cyclin-T2
          Length = 730

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 10  GQKWWESFVEGMTIEVMEDICHQILDL 90
           G+ WWE     +T+E+++++ H+ L +
Sbjct: 217 GKHWWEYVDPTVTLELLDELTHEFLQI 243
>sp|Q8CP22|RECO_STAES DNA repair protein recO (Recombination protein O)
 sp|Q5HNY1|RECO_STAEQ DNA repair protein recO (Recombination protein O)
          Length = 253

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 241 IQLANVLAGSNASKLNHLNIQGESLN 318
           + L N+L     SK+NHLNIQ + LN
Sbjct: 193 LYLLNILQQLPISKMNHLNIQQDILN 218
>sp|Q8HXN7|CCNT1_PANTR Cyclin-T1 (Cyclin-T) (CycT1)
          Length = 725

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 10  GQKWWESFVEGMTIEVMEDICHQILDL 90
           G+ WWE     +T+E+++++ H+ L +
Sbjct: 217 GKHWWEYVDATVTLELLDELTHEFLQI 243
>sp|Q9QWV9|CCNT1_MOUSE Cyclin-T1 (Cyclin-T) (CycT1)
          Length = 724

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 10  GQKWWESFVEGMTIEVMEDICHQILDL 90
           G+ WWE     +T+E+++++ H+ L +
Sbjct: 218 GKHWWEYVDATVTLELLDELTHEFLQI 244
>sp|Q9XT26|CCNT1_HORSE Cyclin-T1 (Cyclin-T) (CycT1)
          Length = 727

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 10  GQKWWESFVEGMTIEVMEDICHQILDL 90
           G+ WWE     +T+E+++++ H+ L +
Sbjct: 218 GKHWWEYVDATVTLELLDELTHEFLQI 244
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,084,150
Number of Sequences: 369166
Number of extensions: 633604
Number of successful extensions: 1077
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)