Planaria EST Database


DrC_02552

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02552
         (188 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P63174|RL38_RAT  60S ribosomal protein L38 >gi|52783779|s...    91   6e-19
sp|Q9JJI8|RL38_MOUSE  60S ribosomal protein L38                    90   1e-18
sp|Q8HXB9|RL38_MACFA  Ribosomal protein L38                        89   4e-18
sp|O17570|RL38_CAEEL  60S ribosomal protein L38                    80   1e-15
sp|O61570|RL38_OSTOS  60S ribosomal protein L38                    77   9e-15
sp|P46291|RL38_LYCES  60S ribosomal protein L38                    76   3e-14
sp|O22860|RL38_ARATH  60S ribosomal protein L38                    75   5e-14
sp|Q9USR7|RL38A_SCHPO  60S ribosomal protein L38-1                 65   4e-11
sp|Q09900|RL38B_SCHPO  60S ribosomal protein L38-2                 65   6e-11
sp|Q9C2B9|RL38_NEUCR  60S ribosomal protein L38                    61   9e-10
>sp|P63174|RL38_RAT 60S ribosomal protein L38
 sp|P63173|RL38_HUMAN 60S ribosomal protein L38
          Length = 70

 Score = 91.3 bits (225), Expect = 6e-19
 Identities = 44/51 (86%), Positives = 49/51 (96%)
 Frame = +1

Query: 1   AKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 153
           AKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKELK
Sbjct: 20  AKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70
>sp|Q9JJI8|RL38_MOUSE 60S ribosomal protein L38
          Length = 70

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 43/51 (84%), Positives = 49/51 (96%)
 Frame = +1

Query: 1   AKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 153
           AKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VK+LK
Sbjct: 20  AKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKDLK 70
>sp|Q8HXB9|RL38_MACFA Ribosomal protein L38
          Length = 70

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 43/51 (84%), Positives = 48/51 (94%)
 Frame = +1

Query: 1   AKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 153
           AKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKE K
Sbjct: 20  AKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEPK 70
>sp|O17570|RL38_CAEEL 60S ribosomal protein L38
          Length = 70

 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 38/51 (74%), Positives = 43/51 (84%)
 Frame = +1

Query: 1   AKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 153
           AKSVKIKKN  N KFKVRC+ +LYTLV+ DK KA+KLKQSLPP + VKELK
Sbjct: 20  AKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKELK 70
>sp|O61570|RL38_OSTOS 60S ribosomal protein L38
          Length = 70

 Score = 77.4 bits (189), Expect = 9e-15
 Identities = 38/51 (74%), Positives = 43/51 (84%)
 Frame = +1

Query: 1   AKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 153
           AK VKIKKN  NVKFKVRCSR+L+TLV+ DK KA+KLKQSLPP + V ELK
Sbjct: 20  AKIVKIKKNSLNVKFKVRCSRYLFTLVVNDKDKAEKLKQSLPPGIQVIELK 70
>sp|P46291|RL38_LYCES 60S ribosomal protein L38
          Length = 69

 Score = 75.9 bits (185), Expect = 3e-14
 Identities = 35/50 (70%), Positives = 45/50 (90%)
 Frame = +1

Query: 1   AKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKEL 150
           A++VKIKKN++ VKFKVRCS++LYTL ++D  KADKLKQSLPP LSV++L
Sbjct: 20  ARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLPPGLSVQDL 69
>sp|O22860|RL38_ARATH 60S ribosomal protein L38
          Length = 69

 Score = 75.1 bits (183), Expect = 5e-14
 Identities = 35/50 (70%), Positives = 45/50 (90%)
 Frame = +1

Query: 1   AKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKEL 150
           A+SVKIK++++ VKFKVRCSR+LYTL + D+ KADKLKQSLPP LSV++L
Sbjct: 20  ARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQDL 69
>sp|Q9USR7|RL38A_SCHPO 60S ribosomal protein L38-1
          Length = 74

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 31/51 (60%), Positives = 43/51 (84%), Gaps = 1/51 (1%)
 Frame = +1

Query: 1   AKSVKIKKN-RENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKEL 150
           A S +IKKN  ++VKFK+RCS++LYTLV+ D  KA+KL+QSLPP+L+V E+
Sbjct: 20  ATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPPDLTVTEV 70
>sp|Q09900|RL38B_SCHPO 60S ribosomal protein L38-2
          Length = 74

 Score = 64.7 bits (156), Expect = 6e-11
 Identities = 31/51 (60%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
 Frame = +1

Query: 1   AKSVKIKKNREN-VKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKEL 150
           A S ++KKN+   VKFK+RCSR+LYTLV+ D  KA+KL+QSLPP L+V E+
Sbjct: 20  ATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQSLPPALTVTEV 70
>sp|Q9C2B9|RL38_NEUCR 60S ribosomal protein L38
          Length = 80

 Score = 60.8 bits (146), Expect = 9e-10
 Identities = 27/52 (51%), Positives = 41/52 (78%), Gaps = 2/52 (3%)
 Frame = +1

Query: 1   AKSVKIKKNR--ENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKEL 150
           A + +IKKN+  + +KFKVRC ++LYTLV+ D  KA+KLK SLPP+L++ ++
Sbjct: 20  ASAARIKKNKATQQIKFKVRCQKYLYTLVLKDSDKAEKLKASLPPSLTIADV 71
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,118,251
Number of Sequences: 369166
Number of extensions: 168897
Number of successful extensions: 393
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 68,354,980
effective HSP length: 35
effective length of database: 61,889,255
effective search space used: 1671009885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)