Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02552
(188 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63174|RL38_RAT 60S ribosomal protein L38 >gi|52783779|s... 91 6e-19
sp|Q9JJI8|RL38_MOUSE 60S ribosomal protein L38 90 1e-18
sp|Q8HXB9|RL38_MACFA Ribosomal protein L38 89 4e-18
sp|O17570|RL38_CAEEL 60S ribosomal protein L38 80 1e-15
sp|O61570|RL38_OSTOS 60S ribosomal protein L38 77 9e-15
sp|P46291|RL38_LYCES 60S ribosomal protein L38 76 3e-14
sp|O22860|RL38_ARATH 60S ribosomal protein L38 75 5e-14
sp|Q9USR7|RL38A_SCHPO 60S ribosomal protein L38-1 65 4e-11
sp|Q09900|RL38B_SCHPO 60S ribosomal protein L38-2 65 6e-11
sp|Q9C2B9|RL38_NEUCR 60S ribosomal protein L38 61 9e-10
>sp|P63174|RL38_RAT 60S ribosomal protein L38
sp|P63173|RL38_HUMAN 60S ribosomal protein L38
Length = 70
Score = 91.3 bits (225), Expect = 6e-19
Identities = 44/51 (86%), Positives = 49/51 (96%)
Frame = +1
Query: 1 AKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 153
AKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKELK
Sbjct: 20 AKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70
>sp|Q9JJI8|RL38_MOUSE 60S ribosomal protein L38
Length = 70
Score = 90.1 bits (222), Expect = 1e-18
Identities = 43/51 (84%), Positives = 49/51 (96%)
Frame = +1
Query: 1 AKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 153
AKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VK+LK
Sbjct: 20 AKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKDLK 70
>sp|Q8HXB9|RL38_MACFA Ribosomal protein L38
Length = 70
Score = 88.6 bits (218), Expect = 4e-18
Identities = 43/51 (84%), Positives = 48/51 (94%)
Frame = +1
Query: 1 AKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 153
AKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKE K
Sbjct: 20 AKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEPK 70
>sp|O17570|RL38_CAEEL 60S ribosomal protein L38
Length = 70
Score = 80.5 bits (197), Expect = 1e-15
Identities = 38/51 (74%), Positives = 43/51 (84%)
Frame = +1
Query: 1 AKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 153
AKSVKIKKN N KFKVRC+ +LYTLV+ DK KA+KLKQSLPP + VKELK
Sbjct: 20 AKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKELK 70
>sp|O61570|RL38_OSTOS 60S ribosomal protein L38
Length = 70
Score = 77.4 bits (189), Expect = 9e-15
Identities = 38/51 (74%), Positives = 43/51 (84%)
Frame = +1
Query: 1 AKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 153
AK VKIKKN NVKFKVRCSR+L+TLV+ DK KA+KLKQSLPP + V ELK
Sbjct: 20 AKIVKIKKNSLNVKFKVRCSRYLFTLVVNDKDKAEKLKQSLPPGIQVIELK 70
>sp|P46291|RL38_LYCES 60S ribosomal protein L38
Length = 69
Score = 75.9 bits (185), Expect = 3e-14
Identities = 35/50 (70%), Positives = 45/50 (90%)
Frame = +1
Query: 1 AKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKEL 150
A++VKIKKN++ VKFKVRCS++LYTL ++D KADKLKQSLPP LSV++L
Sbjct: 20 ARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLPPGLSVQDL 69
>sp|O22860|RL38_ARATH 60S ribosomal protein L38
Length = 69
Score = 75.1 bits (183), Expect = 5e-14
Identities = 35/50 (70%), Positives = 45/50 (90%)
Frame = +1
Query: 1 AKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKEL 150
A+SVKIK++++ VKFKVRCSR+LYTL + D+ KADKLKQSLPP LSV++L
Sbjct: 20 ARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQDL 69
>sp|Q9USR7|RL38A_SCHPO 60S ribosomal protein L38-1
Length = 74
Score = 65.5 bits (158), Expect = 4e-11
Identities = 31/51 (60%), Positives = 43/51 (84%), Gaps = 1/51 (1%)
Frame = +1
Query: 1 AKSVKIKKN-RENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKEL 150
A S +IKKN ++VKFK+RCS++LYTLV+ D KA+KL+QSLPP+L+V E+
Sbjct: 20 ATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPPDLTVTEV 70
>sp|Q09900|RL38B_SCHPO 60S ribosomal protein L38-2
Length = 74
Score = 64.7 bits (156), Expect = 6e-11
Identities = 31/51 (60%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Frame = +1
Query: 1 AKSVKIKKNREN-VKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKEL 150
A S ++KKN+ VKFK+RCSR+LYTLV+ D KA+KL+QSLPP L+V E+
Sbjct: 20 ATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQSLPPALTVTEV 70
>sp|Q9C2B9|RL38_NEUCR 60S ribosomal protein L38
Length = 80
Score = 60.8 bits (146), Expect = 9e-10
Identities = 27/52 (51%), Positives = 41/52 (78%), Gaps = 2/52 (3%)
Frame = +1
Query: 1 AKSVKIKKNR--ENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKEL 150
A + +IKKN+ + +KFKVRC ++LYTLV+ D KA+KLK SLPP+L++ ++
Sbjct: 20 ASAARIKKNKATQQIKFKVRCQKYLYTLVLKDSDKAEKLKASLPPSLTIADV 71
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,118,251
Number of Sequences: 369166
Number of extensions: 168897
Number of successful extensions: 393
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 68,354,980
effective HSP length: 35
effective length of database: 61,889,255
effective search space used: 1671009885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)