Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02551
(783 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P70845|Y2824_BORBU Hypothetical protein BBD24 30 7.4
sp|Q8K9J9|RNE_BUCAP Ribonuclease E (RNase E) 30 7.4
sp|O25685|Y1044_HELPY Hypothetical metallophosphoesterase H... 30 7.4
>sp|P70845|Y2824_BORBU Hypothetical protein BBD24
Length = 76
Score = 30.0 bits (66), Expect = 7.4
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Frame = -3
Query: 580 LVSYIQYRLLKHCISLFH-----------SFCKKIIDYFILWFLLI*SGFP*ILINYRFL 434
+ + I Y L C+ FH FCKK D F+L ++ F ++IN +F
Sbjct: 1 MTAIIVYSCLTMCVIYFHLQLKTFFTKLIRFCKKCFDIFLLLIEMLKLIFYLLIINNKFY 60
Query: 433 NIMVIHI 413
++I I
Sbjct: 61 IFIIISI 67
>sp|Q8K9J9|RNE_BUCAP Ribonuclease E (RNase E)
Length = 968
Score = 30.0 bits (66), Expect = 7.4
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 499 NNQLFFYKMNEITRY-NVSKVDIECNLPIDYYLHKMNFFKNHQYICFG*YLLL 654
NN + + + T+Y ++ K+D + N ID+ L+ +NF K + + F Y L
Sbjct: 644 NNHQYSHVFDNNTKYTSLKKIDFQKNT-IDFELNSLNFLKKNNFYIFSKYNFL 695
>sp|O25685|Y1044_HELPY Hypothetical metallophosphoesterase HP1044
Length = 370
Score = 30.0 bits (66), Expect = 7.4
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = -3
Query: 580 LVSYIQYRLLKHCISLFHSFCKKIIDYFILWFLLI*SGFP*ILINYRFLNIMVIHI 413
L++Y +R+LK ++L KKI Y LWF ++ S + YR NIM H+
Sbjct: 13 LLNYSSFRMLKSFLTL-----KKISQYAYLWFFILLSIGEAAFVFYR--NIMPSHL 61
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,233,755
Number of Sequences: 369166
Number of extensions: 1684722
Number of successful extensions: 2981
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2980
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)