Planaria EST Database


DrC_02551

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02551
         (783 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P70845|Y2824_BORBU  Hypothetical protein BBD24                  30   7.4  
sp|Q8K9J9|RNE_BUCAP  Ribonuclease E (RNase E)                      30   7.4  
sp|O25685|Y1044_HELPY  Hypothetical metallophosphoesterase H...    30   7.4  
>sp|P70845|Y2824_BORBU Hypothetical protein BBD24
          Length = 76

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
 Frame = -3

Query: 580 LVSYIQYRLLKHCISLFH-----------SFCKKIIDYFILWFLLI*SGFP*ILINYRFL 434
           + + I Y  L  C+  FH            FCKK  D F+L   ++   F  ++IN +F 
Sbjct: 1   MTAIIVYSCLTMCVIYFHLQLKTFFTKLIRFCKKCFDIFLLLIEMLKLIFYLLIINNKFY 60

Query: 433 NIMVIHI 413
             ++I I
Sbjct: 61  IFIIISI 67
>sp|Q8K9J9|RNE_BUCAP Ribonuclease E (RNase E)
          Length = 968

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 499 NNQLFFYKMNEITRY-NVSKVDIECNLPIDYYLHKMNFFKNHQYICFG*YLLL 654
           NN  + +  +  T+Y ++ K+D + N  ID+ L+ +NF K + +  F  Y  L
Sbjct: 644 NNHQYSHVFDNNTKYTSLKKIDFQKNT-IDFELNSLNFLKKNNFYIFSKYNFL 695
>sp|O25685|Y1044_HELPY Hypothetical metallophosphoesterase HP1044
          Length = 370

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = -3

Query: 580 LVSYIQYRLLKHCISLFHSFCKKIIDYFILWFLLI*SGFP*ILINYRFLNIMVIHI 413
           L++Y  +R+LK  ++L     KKI  Y  LWF ++ S      + YR  NIM  H+
Sbjct: 13  LLNYSSFRMLKSFLTL-----KKISQYAYLWFFILLSIGEAAFVFYR--NIMPSHL 61
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,233,755
Number of Sequences: 369166
Number of extensions: 1684722
Number of successful extensions: 2981
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2980
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)