Planaria EST Database


DrC_02545

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02545
         (438 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P22211|NPR1_YEAST  Nitrogen permease reactivator protein        33   0.27 
sp|P53253|YG2K_YEAST  Hypothetical 106.5 kDa protein in CTT1...    30   2.3  
sp|Q8NGN8|OR4A4_HUMAN  Olfactory receptor 4A4                      30   3.0  
sp|Q5QYR6|Y1051_IDILO  Putative reductase IL1051                   30   3.0  
sp|Q9PJY1|PMPC_CHLMU  Probable outer membrane protein pmpC p...    29   3.9  
sp|P14778|IL1R1_HUMAN  Interleukin-1 receptor, type I precur...    29   5.1  
sp|Q12080|YP46_YEAST  Hypothetical protein YPL146C                 28   8.6  
>sp|P22211|NPR1_YEAST Nitrogen permease reactivator protein
          Length = 790

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 130 ITGALSSTKN--GAVTPRSNSIIPYQINNTRKNTSIGNDIYATVNKPIKKESTTKTPSNI 303
           IT  LS+T +  G   P  +S IPY + N+ K+ +  N   ++++    +      P+NI
Sbjct: 148 ITSRLSTTSHTSGRAIPSLSSSIPYSVPNSNKDNNSSNSNSSSLSSSWLETYAGGMPNNI 207

Query: 304 SQIHKN 321
           S I  N
Sbjct: 208 SAIDSN 213
>sp|P53253|YG2K_YEAST Hypothetical 106.5 kDa protein in CTT1-PRP31 intergenic region
          Length = 936

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
 Frame = +1

Query: 130 ITGALSSTKNGAVTPRSNSIIPYQINNTRKNTSIGNDIYA--TVNKPIKKESTTKTPSN- 300
           +  A  S      T  S +  P   N +  NTS+ N+I    + N   KK+S   +PSN 
Sbjct: 382 VISAEGSNSQAVTTTTSTTTSPTTFNFSGDNTSLSNEISLSDSSNGNSKKDSDFFSPSND 441

Query: 301 --ISQIHKNKYKF*IFQSQVK*SFDISHMTVTNNL 399
              +Q+ +    F    S  K S DIS   VT+NL
Sbjct: 442 KYTNQLFELNVDFGNMFSSSKLSSDIS---VTSNL 473
>sp|Q8NGN8|OR4A4_HUMAN Olfactory receptor 4A4
          Length = 299

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 308 CDMFD--GVLVVDSFLIGLFTVA*ISLPIDVFFLVLFI*YGIML 183
           CDM+    +   D+ +IGL  VA   L   + FL+L I YG++L
Sbjct: 177 CDMYPLLKLACTDTHVIGLLVVANGGLSCTIAFLLLLISYGVIL 220
>sp|Q5QYR6|Y1051_IDILO Putative reductase IL1051
          Length = 392

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +1

Query: 187 IIPYQINNTRKNTSIGNDIYATVNKPIKKESTTKT-PSNISQIHK 318
           ++ Y + + ++      ++Y++V KPI K+ TTKT  ++  Q+H+
Sbjct: 134 LVVYSLASPKRKDPDSGEVYSSVLKPIGKQYTTKTYNTDKDQVHE 178
>sp|Q9PJY1|PMPC_CHLMU Probable outer membrane protein pmpC precursor (Polymorphic
           membrane protein C)
          Length = 1460

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = +1

Query: 118 TIYDITGALSSTKNGAVTPRSNSIIPYQINN------TRKNTSIGNDIYATVNKPIKKES 279
           T+ DI   L    N A TP  NS+   Q+NN        ++TS G +  +    PI  + 
Sbjct: 438 TLSDIKNTLIFVNNTAKTPEENSLKSSQLNNQNPSEEEHQDTSEGEESQSLETSPITNQD 497

Query: 280 TTKT 291
           +  +
Sbjct: 498 SASS 501
>sp|P14778|IL1R1_HUMAN Interleukin-1 receptor, type I precursor (IL-1R-1) (IL-1RT1)
           (IL-1R-alpha) (p80) (Antigen CD121a)
          Length = 569

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +1

Query: 121 IYDITGALSSTK----NGAVTPRSNSIIPYQINNTRKNTSIGNDIYATVNKPIKKESTTK 288
           I ++TG LS       NG+V    + ++             G D Y+  N   K+ ST  
Sbjct: 247 ICNVTGQLSDIAYWKWNGSVIDEDDPVL-------------GEDYYSVENPANKRRSTLI 293

Query: 289 TPSNISQIHKNKYK 330
           T  NIS+I    YK
Sbjct: 294 TVLNISEIESRFYK 307
>sp|Q12080|YP46_YEAST Hypothetical protein YPL146C
          Length = 455

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 205 NNTRKNTSIGNDIYATVNKPIKKESTTKTPSNISQIHKNKYK 330
           N + + +    +I  ++NKP+K +  TK   N ++ H+ K K
Sbjct: 294 NESTQCSGSDKEIKLSINKPVKNKKKTKYQRNKAKRHEEKVK 335
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,761,907
Number of Sequences: 369166
Number of extensions: 919125
Number of successful extensions: 2169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2169
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2244666600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)