Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02545
(438 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22211|NPR1_YEAST Nitrogen permease reactivator protein 33 0.27
sp|P53253|YG2K_YEAST Hypothetical 106.5 kDa protein in CTT1... 30 2.3
sp|Q8NGN8|OR4A4_HUMAN Olfactory receptor 4A4 30 3.0
sp|Q5QYR6|Y1051_IDILO Putative reductase IL1051 30 3.0
sp|Q9PJY1|PMPC_CHLMU Probable outer membrane protein pmpC p... 29 3.9
sp|P14778|IL1R1_HUMAN Interleukin-1 receptor, type I precur... 29 5.1
sp|Q12080|YP46_YEAST Hypothetical protein YPL146C 28 8.6
>sp|P22211|NPR1_YEAST Nitrogen permease reactivator protein
Length = 790
Score = 33.1 bits (74), Expect = 0.27
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 130 ITGALSSTKN--GAVTPRSNSIIPYQINNTRKNTSIGNDIYATVNKPIKKESTTKTPSNI 303
IT LS+T + G P +S IPY + N+ K+ + N ++++ + P+NI
Sbjct: 148 ITSRLSTTSHTSGRAIPSLSSSIPYSVPNSNKDNNSSNSNSSSLSSSWLETYAGGMPNNI 207
Query: 304 SQIHKN 321
S I N
Sbjct: 208 SAIDSN 213
>sp|P53253|YG2K_YEAST Hypothetical 106.5 kDa protein in CTT1-PRP31 intergenic region
Length = 936
Score = 30.0 bits (66), Expect = 2.3
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = +1
Query: 130 ITGALSSTKNGAVTPRSNSIIPYQINNTRKNTSIGNDIYA--TVNKPIKKESTTKTPSN- 300
+ A S T S + P N + NTS+ N+I + N KK+S +PSN
Sbjct: 382 VISAEGSNSQAVTTTTSTTTSPTTFNFSGDNTSLSNEISLSDSSNGNSKKDSDFFSPSND 441
Query: 301 --ISQIHKNKYKF*IFQSQVK*SFDISHMTVTNNL 399
+Q+ + F S K S DIS VT+NL
Sbjct: 442 KYTNQLFELNVDFGNMFSSSKLSSDIS---VTSNL 473
>sp|Q8NGN8|OR4A4_HUMAN Olfactory receptor 4A4
Length = 299
Score = 29.6 bits (65), Expect = 3.0
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 308 CDMFD--GVLVVDSFLIGLFTVA*ISLPIDVFFLVLFI*YGIML 183
CDM+ + D+ +IGL VA L + FL+L I YG++L
Sbjct: 177 CDMYPLLKLACTDTHVIGLLVVANGGLSCTIAFLLLLISYGVIL 220
>sp|Q5QYR6|Y1051_IDILO Putative reductase IL1051
Length = 392
Score = 29.6 bits (65), Expect = 3.0
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 187 IIPYQINNTRKNTSIGNDIYATVNKPIKKESTTKT-PSNISQIHK 318
++ Y + + ++ ++Y++V KPI K+ TTKT ++ Q+H+
Sbjct: 134 LVVYSLASPKRKDPDSGEVYSSVLKPIGKQYTTKTYNTDKDQVHE 178
>sp|Q9PJY1|PMPC_CHLMU Probable outer membrane protein pmpC precursor (Polymorphic
membrane protein C)
Length = 1460
Score = 29.3 bits (64), Expect = 3.9
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = +1
Query: 118 TIYDITGALSSTKNGAVTPRSNSIIPYQINN------TRKNTSIGNDIYATVNKPIKKES 279
T+ DI L N A TP NS+ Q+NN ++TS G + + PI +
Sbjct: 438 TLSDIKNTLIFVNNTAKTPEENSLKSSQLNNQNPSEEEHQDTSEGEESQSLETSPITNQD 497
Query: 280 TTKT 291
+ +
Sbjct: 498 SASS 501
>sp|P14778|IL1R1_HUMAN Interleukin-1 receptor, type I precursor (IL-1R-1) (IL-1RT1)
(IL-1R-alpha) (p80) (Antigen CD121a)
Length = 569
Score = 28.9 bits (63), Expect = 5.1
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Frame = +1
Query: 121 IYDITGALSSTK----NGAVTPRSNSIIPYQINNTRKNTSIGNDIYATVNKPIKKESTTK 288
I ++TG LS NG+V + ++ G D Y+ N K+ ST
Sbjct: 247 ICNVTGQLSDIAYWKWNGSVIDEDDPVL-------------GEDYYSVENPANKRRSTLI 293
Query: 289 TPSNISQIHKNKYK 330
T NIS+I YK
Sbjct: 294 TVLNISEIESRFYK 307
>sp|Q12080|YP46_YEAST Hypothetical protein YPL146C
Length = 455
Score = 28.1 bits (61), Expect = 8.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 205 NNTRKNTSIGNDIYATVNKPIKKESTTKTPSNISQIHKNKYK 330
N + + + +I ++NKP+K + TK N ++ H+ K K
Sbjct: 294 NESTQCSGSDKEIKLSINKPVKNKKKTKYQRNKAKRHEEKVK 335
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,761,907
Number of Sequences: 369166
Number of extensions: 919125
Number of successful extensions: 2169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2169
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2244666600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)