Planaria EST Database


DrC_02543

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02543
         (522 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12996|CSTF3_HUMAN  Cleavage stimulation factor, 77 kDa s...    74   2e-13
sp|Q5RDW9|CSTF3_PONPY  Cleavage stimulation factor, 77 kDa s...    74   2e-13
sp|Q99LI7|CSTF3_MOUSE  Cleavage stimulation factor, 77 kDa s...    74   2e-13
sp|P25991|SUF_DROME  Suppressor of forked protein                  65   1e-10
sp|O13911|PNK1_SCHPO  Bifunctional polynucleotide phosphatas...    31   2.0  
sp|Q8INR6|DOT1L_DROME  Histone-lysine N-methyltransferase, H...    30   2.7  
sp|Q8SX83|SPEN_DROME  Split ends protein                           30   4.6  
sp|P0A2T6|CRP_SALTY  Catabolite gene activator (cAMP recepto...    29   6.0  
sp|Q28689|MRP2_RABIT  Canalicular multispecific organic anio...    29   6.0  
sp|P38836|ECM14_YEAST  Extracellular matrix protein 14 precu...    29   7.8  
>sp|Q12996|CSTF3_HUMAN Cleavage stimulation factor, 77 kDa subunit (CSTF 77 kDa subunit)
           (CF-1 77 kDa subunit) (CstF-77)
          Length = 717

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 49/148 (33%), Positives = 73/148 (49%)
 Frame = +1

Query: 7   TRQMLPFKPKAYPRTGSHXXXXXXXXXXXAASALLRILPPPECFHGPFVQVAKFMEHFLE 186
           T+QM+PF+P+     G H           AA  L+++LPPP CF GPFVQV + ME F  
Sbjct: 586 TQQMIPFQPRHLAPPGLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRR 645

Query: 187 LKIPEEYANPPVDENVIIDSGTALSIEMAANAQLMRKRRRISTNNENRESDDETENNLST 366
            KIP       V+E V I +G A  + +  N  +  +   + T    R ++D  E+    
Sbjct: 646 CKIPN-----TVEEAVRIITGGAPELAVEGNGPV--ESNAVLTKAVKRPNEDSDEDEEKG 698

Query: 367 SIGGIPTIQAAGGNILDIFRLRQQKKAR 450
           ++  +P +        DI+R RQQK+ R
Sbjct: 699 AV--VPPVH-------DIYRARQQKRIR 717
>sp|Q5RDW9|CSTF3_PONPY Cleavage stimulation factor, 77 kDa subunit (CSTF 77 kDa subunit)
           (CF-1 77 kDa subunit) (CstF-77)
          Length = 717

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 49/148 (33%), Positives = 73/148 (49%)
 Frame = +1

Query: 7   TRQMLPFKPKAYPRTGSHXXXXXXXXXXXAASALLRILPPPECFHGPFVQVAKFMEHFLE 186
           T+QM+PF+P+     G H           AA  L+++LPPP CF GPFVQV + ME F  
Sbjct: 586 TQQMIPFQPRHLAPPGLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRR 645

Query: 187 LKIPEEYANPPVDENVIIDSGTALSIEMAANAQLMRKRRRISTNNENRESDDETENNLST 366
            KIP       V+E V I +G A  + +  N  +  +   + T    R ++D  E+    
Sbjct: 646 CKIPN-----TVEEAVRIITGGAPELAVEGNGPV--ESNAVLTKAVKRPNEDSDEDEEKG 698

Query: 367 SIGGIPTIQAAGGNILDIFRLRQQKKAR 450
           ++  +P +        DI+R RQQK+ R
Sbjct: 699 AV--VPPVH-------DIYRARQQKRIR 717
>sp|Q99LI7|CSTF3_MOUSE Cleavage stimulation factor, 77 kDa subunit (CSTF 77 kDa subunit)
           (CF-1 77 kDa subunit) (CstF-77)
          Length = 717

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 49/148 (33%), Positives = 73/148 (49%)
 Frame = +1

Query: 7   TRQMLPFKPKAYPRTGSHXXXXXXXXXXXAASALLRILPPPECFHGPFVQVAKFMEHFLE 186
           T+QM+PF+P+     G H           AA  L+++LPPP CF GPFVQV + ME F  
Sbjct: 586 TQQMIPFQPRHLAPPGLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRR 645

Query: 187 LKIPEEYANPPVDENVIIDSGTALSIEMAANAQLMRKRRRISTNNENRESDDETENNLST 366
            KIP       V+E V I +G A  + +  N  +  +   + T    R ++D  E+    
Sbjct: 646 CKIPN-----TVEEAVRIITGGAPELAVEGNGPV--ESSAVLTKAVKRPNEDSDEDEEKG 698

Query: 367 SIGGIPTIQAAGGNILDIFRLRQQKKAR 450
           ++  +P +        DI+R RQQK+ R
Sbjct: 699 AV--VPPVH-------DIYRARQQKRIR 717
>sp|P25991|SUF_DROME Suppressor of forked protein
          Length = 733

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 13/157 (8%)
 Frame = +1

Query: 13   QMLPFKPKAYPRTGSHXXXXXXXXXXXAASALLRILPPPECFHGPFVQVAKFMEHFLELK 192
            QM+PFKP+     G+H           A +AL   LPPP  F GPFV V    + F+ L 
Sbjct: 589  QMIPFKPRPCAHPGAHPLAGGVFPQPPALAALCATLPPPNSFRGPFVSVELLFDIFMRLN 648

Query: 193  IPEEYANPPVDENV-------------IIDSGTALSIEMAANAQLMRKRRRISTNNENRE 333
            +P+    P  D  +             I+D+ T   ++ +  A   R+RR +   +   +
Sbjct: 649  LPDSAPQPNGDNELSPKIFDLAKSVHWIVDTSTYTGVQHSVTAVPPRRRRLLPGGD---D 705

Query: 334  SDDETENNLSTSIGGIPTIQAAGGNILDIFRLRQQKK 444
            SDDE              +Q A     DI+RLRQ K+
Sbjct: 706  SDDE--------------LQTAVPPSHDIYRLRQLKR 728
>sp|O13911|PNK1_SCHPO Bifunctional polynucleotide phosphatase/kinase (Polynucleotide
           kinase-3'-phosphatase) (DNA 5'-kinase/3'-phosphatase)
           [Includes: Polynucleotide 3'-phosphatase
           (2'(3')-polynucleotidase); Polynucleotide
           5'-hydroxy-kinase ]
          Length = 421

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 53  VRIQFPEENFLHHQLLQHYFESYHPQN 133
           ++ + PE+ FL H  +   FES+HP+N
Sbjct: 211 IKFETPEQFFLGHSFVPPNFESFHPKN 237
>sp|Q8INR6|DOT1L_DROME Histone-lysine N-methyltransferase, H3 lysine-79 specific (Histone
           H3-K79 methyltransferase) (H3-K79-HMTase) (Protein
           grappa) (DOT1-like protein) (dDOT1L)
          Length = 1848

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +1

Query: 250 TALSIEMAANAQLMRK--RRRISTNNENRESDDETENNLSTSIGGIPTIQAAGGNILDIF 423
           TA +   A+N  + RK      S+  ++ +SDDE ENN S S GG       GG++    
Sbjct: 464 TATNTTSASNGPMTRKVWSDWCSSKGKSSQSDDE-ENNNSNSNGGSNGGSIGGGSVGRQA 522

Query: 424 RLRQQKKAR 450
           R   QKK +
Sbjct: 523 RATTQKKRK 531
>sp|Q8SX83|SPEN_DROME Split ends protein
          Length = 5560

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 277  NAQLMRKRRRISTNNENRESDDETENNLSTSIGGIPTIQAA 399
            NA    KRRR++T  +   S   T ++  + +GGI ++  A
Sbjct: 1199 NASAAAKRRRVTTTMQQPSSSSTTNSSSGSGLGGISSLTPA 1239
>sp|P0A2T6|CRP_SALTY Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory
           protein)
 sp|P0A2T7|CRP_KLEAE Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory
           protein)
          Length = 210

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +2

Query: 332 SLMMRQKTICQLLSEVFQQFRQLVEI---FLISLDSDNKRRL 448
           S  +R KT C++    +++FRQL+++    L+ L S   RRL
Sbjct: 84  SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSSQMARRL 125
>sp|Q28689|MRP2_RABIT Canalicular multispecific organic anion transporter 1 (ATP-binding
            cassette sub-family C member 2) (Multidrug
            resistance-associated protein 2) (Canalicular multidrug
            resistance protein) (Epithelial basolateral chloride
            conductance regulator)
          Length = 1564

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 16/73 (21%)
 Frame = +1

Query: 214  PPVDENVIIDSGTALSIEMAANAQLMRKRRRISTN----------------NENRESDDE 345
            P VDE V++++GT L  E  + + L+ K+   + N                N+  E DD+
Sbjct: 824  PQVDEIVVVENGTIL--EKGSYSSLLAKKGVFAKNLKMFVKHTDSEGEVTVNDGSEEDDD 881

Query: 346  TENNLSTSIGGIP 384
             ++ L +SI   P
Sbjct: 882  DDSGLISSIEEFP 894
>sp|P38836|ECM14_YEAST Extracellular matrix protein 14 precursor
          Length = 430

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +1

Query: 175 HFLELKIPEEYANPPVDENVIIDSGTALSIEMAANAQLMRKRRRISTN------NENRES 336
           +F+++K+P+E      D  VIID+   L       +Q+M + + +  N      NE R+ 
Sbjct: 65  NFIDIKLPKEIGEQINDGQVIIDNMNELIQNTLPTSQMMAREQAVFENDYDFFFNEYRDL 124

Query: 337 D 339
           D
Sbjct: 125 D 125
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,555,753
Number of Sequences: 369166
Number of extensions: 1265315
Number of successful extensions: 3406
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3396
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)