Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02540
(852 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42833|HXT14_YEAST Hexose transporter HXT14 34 0.59
sp|Q9SIK7|PSNB_ARATH Presenilin-like protein At2g29900 33 1.0
sp|Q9UST8|RNH1_SCHPO Ribonuclease H (RNase H) 31 5.0
sp|P90245|POL1_BAMMN Genome polyprotein 1 [Contains: Protei... 31 5.0
sp|Q9P0L9|PK2L1_HUMAN Polycystic kidney disease 2-like 1 pr... 30 6.5
sp|P32465|HXT1_YEAST Low-affinity glucose transporter HXT1 30 6.5
sp|Q6FBS3|UPPP3_ACIAD Undecaprenyl-diphosphatase 3 (Undecap... 30 8.5
sp|P06684|CO5_MOUSE Complement C5 precursor (Hemolytic comp... 30 8.5
>sp|P42833|HXT14_YEAST Hexose transporter HXT14
Length = 540
Score = 33.9 bits (76), Expect = 0.59
Identities = 26/118 (22%), Positives = 51/118 (43%)
Frame = +1
Query: 475 GYIFASFMVAMMIGSCAFKALEKWSKIESFMRFVLVVSCLCLALPFLRPGNQLIIYLGFI 654
G I + F ++ +G+ + W + + F LVV C+ + + L G + LG
Sbjct: 119 GLIISIFNISCGVGALTLSKIGDWIGRKGGIWFALVVYCIGITIQILSYGRWYFLTLGRA 178
Query: 655 IFEICVGIFWPALGTLRGKYVAEEIRATVMNCFRVPLNLIVVLILCQNFKLTFIFQLC 828
+ I VG+ + + +IR ++++ ++ LIV + L FI + C
Sbjct: 179 VTGIGVGVTTVLVPMFLSENSPLKIRGSMVSTYQ----LIVTFGILMGNILNFICERC 232
>sp|Q9SIK7|PSNB_ARATH Presenilin-like protein At2g29900
Length = 397
Score = 33.1 bits (74), Expect = 1.0
Identities = 26/86 (30%), Positives = 41/86 (47%)
Frame = +1
Query: 562 FMRFVLVVSCLCLALPFLRPGNQLIIYLGFIIFEICVGIFWPALGTLRGKYVAEEIRATV 741
F+ + V + + + L +LR L Y+GF F + LG L G EI +
Sbjct: 80 FVAAITVATFVLVLLFYLRCVKFLKFYMGFSAFIV--------LGNLGG-----EILVLL 126
Query: 742 MNCFRVPLNLIVVLILCQNFKLTFIF 819
++ FR P++ I LIL NF + +F
Sbjct: 127 IDRFRFPIDSITFLILLFNFSVVGVF 152
>sp|Q9UST8|RNH1_SCHPO Ribonuclease H (RNase H)
Length = 264
Score = 30.8 bits (68), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 261 FSPQENNYSIHYSQKYNCNIERCYKTNKIN*ILSNHSRK 145
+S +NYS +S KY I R Y T K I SN + +
Sbjct: 77 YSSSSSNYSARHSDKYRKKISRSYSTEKDIEIFSNDTHE 115
>sp|P90245|POL1_BAMMN Genome polyprotein 1 [Contains: Protein P3; 6 kDa protein 1 (6K1);
Cytoplasmic inclusion protein (CI); 6 kDa protein 2
(6K2); Viral genome-linked protein (VPg); Nuclear
inclusion protein A (NI-a) (NIa) (NIa-pro); Nuclear
inclusion protein B (NI-b) (NIb) (RNA-directed RNA
polymerase); Coat protein (CP)]
Length = 2258
Score = 30.8 bits (68), Expect = 5.0
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 9 FSGNFSSYVLSTTMIQRRCIKEKFPERIARNNIFSCLSWKFYYCNTFWSDCSIFS*FYW 185
F G+ S+V S+ + K K R R + F+ W ++CN W CS++S W
Sbjct: 173 FGGHIRSFVWSSDSGEI-FPKPKRSSRTKRISTFTSYYWGEFWCNCIWLLCSLWSPARW 230
>sp|Q9P0L9|PK2L1_HUMAN Polycystic kidney disease 2-like 1 protein (Polycystin-L)
(Polycystin 2 homolog)
Length = 805
Score = 30.4 bits (67), Expect = 6.5
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +1
Query: 127 NSIIAILSGVIAQYSVDFIGFVAPFDVAIVFLTIMNGVIIFLWTENYGDAKGSVYNNFKM 306
N + LS +A+ + D +GF F + + F G ++F G+ NF
Sbjct: 460 NKTMTQLSSTLARCAKDILGFAVMFFI-VFFAYAQLGYLLF----------GTQVENFST 508
Query: 307 TLKSIFTDYKIL 342
+K IFT ++I+
Sbjct: 509 FIKCIFTQFRII 520
>sp|P32465|HXT1_YEAST Low-affinity glucose transporter HXT1
Length = 570
Score = 30.4 bits (67), Expect = 6.5
Identities = 24/109 (22%), Positives = 44/109 (40%)
Frame = +1
Query: 475 GYIFASFMVAMMIGSCAFKALEKWSKIESFMRFVLVVSCLCLALPFLRPGNQLIIYLGFI 654
G I + F + IG L + V+V+ + + + ++G I
Sbjct: 116 GLIVSIFNIGCAIGGIVLAKLGDMYGRRIGLIVVVVIYTIGIIIQIASINKWYQYFIGRI 175
Query: 655 IFEICVGIFWPALGTLRGKYVAEEIRATVMNCFRVPLNLIVVLILCQNF 801
I + VG L + E+R T+++C++V + L + L C NF
Sbjct: 176 ISGLGVGGITVLSPMLISEVAPSEMRGTLVSCYQVMITLGIFLGYCTNF 224
>sp|Q6FBS3|UPPP3_ACIAD Undecaprenyl-diphosphatase 3 (Undecaprenyl pyrophosphate
phosphatase 3) (Bacitracin resistance protein 3)
Length = 266
Score = 30.0 bits (66), Expect = 8.5
Identities = 29/96 (30%), Positives = 46/96 (47%)
Frame = +1
Query: 79 FPKELQGTIFSHAYLGNSIIAILSGVIAQYSVDFIGFVAPFDVAIVFLTIMNGVIIFLWT 258
F + + F+ + L A++ GV+A VDFI V + + I+ G+IIF W
Sbjct: 75 FSGDQEARHFTFSVLMAFFPAVIIGVLA---VDFIKSVLFSPLVVAIALIIGGLIIF-WV 130
Query: 259 ENYGDAKGSVYNNFKMTLKSIFTDYKILSLGVIQSL 366
E+ D K S K+T K + +++G IQ L
Sbjct: 131 ES-RDFKPSTTEATKITFK------QAIAVGFIQCL 159
>sp|P06684|CO5_MOUSE Complement C5 precursor (Hemolytic complement) [Contains:
Complement C5 beta chain; Complement C5 alpha chain; C5a
anaphylatoxin; Complement C5 alpha' chain]
Length = 1680
Score = 30.0 bits (66), Expect = 8.5
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Frame = +1
Query: 208 AIVFLTIMNGVIIFLWTENYGDAKGSVYNNFKMTLKSIFTD------YKILSLGVI 357
A+ + ++ I WTENY Y N +T KS + D Y ILS G I
Sbjct: 454 AVAYSSLSQSYIYIAWTENYKPMLVGEYLNIMVTPKSPYIDKITHYNYLILSKGKI 509
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,834,588
Number of Sequences: 369166
Number of extensions: 2117804
Number of successful extensions: 5082
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5081
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)