Planaria EST Database


DrC_02540

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02540
         (852 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P42833|HXT14_YEAST  Hexose transporter HXT14                    34   0.59 
sp|Q9SIK7|PSNB_ARATH  Presenilin-like protein At2g29900            33   1.0  
sp|Q9UST8|RNH1_SCHPO  Ribonuclease H (RNase H)                     31   5.0  
sp|P90245|POL1_BAMMN  Genome polyprotein 1 [Contains: Protei...    31   5.0  
sp|Q9P0L9|PK2L1_HUMAN  Polycystic kidney disease 2-like 1 pr...    30   6.5  
sp|P32465|HXT1_YEAST  Low-affinity glucose transporter HXT1        30   6.5  
sp|Q6FBS3|UPPP3_ACIAD  Undecaprenyl-diphosphatase 3 (Undecap...    30   8.5  
sp|P06684|CO5_MOUSE  Complement C5 precursor (Hemolytic comp...    30   8.5  
>sp|P42833|HXT14_YEAST Hexose transporter HXT14
          Length = 540

 Score = 33.9 bits (76), Expect = 0.59
 Identities = 26/118 (22%), Positives = 51/118 (43%)
 Frame = +1

Query: 475 GYIFASFMVAMMIGSCAFKALEKWSKIESFMRFVLVVSCLCLALPFLRPGNQLIIYLGFI 654
           G I + F ++  +G+     +  W   +  + F LVV C+ + +  L  G    + LG  
Sbjct: 119 GLIISIFNISCGVGALTLSKIGDWIGRKGGIWFALVVYCIGITIQILSYGRWYFLTLGRA 178

Query: 655 IFEICVGIFWPALGTLRGKYVAEEIRATVMNCFRVPLNLIVVLILCQNFKLTFIFQLC 828
           +  I VG+    +     +    +IR ++++ ++    LIV   +     L FI + C
Sbjct: 179 VTGIGVGVTTVLVPMFLSENSPLKIRGSMVSTYQ----LIVTFGILMGNILNFICERC 232
>sp|Q9SIK7|PSNB_ARATH Presenilin-like protein At2g29900
          Length = 397

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 26/86 (30%), Positives = 41/86 (47%)
 Frame = +1

Query: 562 FMRFVLVVSCLCLALPFLRPGNQLIIYLGFIIFEICVGIFWPALGTLRGKYVAEEIRATV 741
           F+  + V + + + L +LR    L  Y+GF  F +        LG L G     EI   +
Sbjct: 80  FVAAITVATFVLVLLFYLRCVKFLKFYMGFSAFIV--------LGNLGG-----EILVLL 126

Query: 742 MNCFRVPLNLIVVLILCQNFKLTFIF 819
           ++ FR P++ I  LIL  NF +  +F
Sbjct: 127 IDRFRFPIDSITFLILLFNFSVVGVF 152
>sp|Q9UST8|RNH1_SCHPO Ribonuclease H (RNase H)
          Length = 264

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 261 FSPQENNYSIHYSQKYNCNIERCYKTNKIN*ILSNHSRK 145
           +S   +NYS  +S KY   I R Y T K   I SN + +
Sbjct: 77  YSSSSSNYSARHSDKYRKKISRSYSTEKDIEIFSNDTHE 115
>sp|P90245|POL1_BAMMN Genome polyprotein 1 [Contains: Protein P3; 6 kDa protein 1 (6K1);
           Cytoplasmic inclusion protein (CI); 6 kDa protein 2
           (6K2); Viral genome-linked protein (VPg); Nuclear
           inclusion protein A (NI-a) (NIa) (NIa-pro); Nuclear
           inclusion protein B (NI-b) (NIb) (RNA-directed RNA
           polymerase); Coat protein (CP)]
          Length = 2258

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 9   FSGNFSSYVLSTTMIQRRCIKEKFPERIARNNIFSCLSWKFYYCNTFWSDCSIFS*FYW 185
           F G+  S+V S+   +    K K   R  R + F+   W  ++CN  W  CS++S   W
Sbjct: 173 FGGHIRSFVWSSDSGEI-FPKPKRSSRTKRISTFTSYYWGEFWCNCIWLLCSLWSPARW 230
>sp|Q9P0L9|PK2L1_HUMAN Polycystic kidney disease 2-like 1 protein (Polycystin-L)
           (Polycystin 2 homolog)
          Length = 805

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +1

Query: 127 NSIIAILSGVIAQYSVDFIGFVAPFDVAIVFLTIMNGVIIFLWTENYGDAKGSVYNNFKM 306
           N  +  LS  +A+ + D +GF   F + + F     G ++F          G+   NF  
Sbjct: 460 NKTMTQLSSTLARCAKDILGFAVMFFI-VFFAYAQLGYLLF----------GTQVENFST 508

Query: 307 TLKSIFTDYKIL 342
            +K IFT ++I+
Sbjct: 509 FIKCIFTQFRII 520
>sp|P32465|HXT1_YEAST Low-affinity glucose transporter HXT1
          Length = 570

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 24/109 (22%), Positives = 44/109 (40%)
 Frame = +1

Query: 475 GYIFASFMVAMMIGSCAFKALEKWSKIESFMRFVLVVSCLCLALPFLRPGNQLIIYLGFI 654
           G I + F +   IG      L         +  V+V+  + + +           ++G I
Sbjct: 116 GLIVSIFNIGCAIGGIVLAKLGDMYGRRIGLIVVVVIYTIGIIIQIASINKWYQYFIGRI 175

Query: 655 IFEICVGIFWPALGTLRGKYVAEEIRATVMNCFRVPLNLIVVLILCQNF 801
           I  + VG        L  +    E+R T+++C++V + L + L  C NF
Sbjct: 176 ISGLGVGGITVLSPMLISEVAPSEMRGTLVSCYQVMITLGIFLGYCTNF 224
>sp|Q6FBS3|UPPP3_ACIAD Undecaprenyl-diphosphatase 3 (Undecaprenyl pyrophosphate
           phosphatase 3) (Bacitracin resistance protein 3)
          Length = 266

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 29/96 (30%), Positives = 46/96 (47%)
 Frame = +1

Query: 79  FPKELQGTIFSHAYLGNSIIAILSGVIAQYSVDFIGFVAPFDVAIVFLTIMNGVIIFLWT 258
           F  + +   F+ + L     A++ GV+A   VDFI  V    + +    I+ G+IIF W 
Sbjct: 75  FSGDQEARHFTFSVLMAFFPAVIIGVLA---VDFIKSVLFSPLVVAIALIIGGLIIF-WV 130

Query: 259 ENYGDAKGSVYNNFKMTLKSIFTDYKILSLGVIQSL 366
           E+  D K S     K+T K      + +++G IQ L
Sbjct: 131 ES-RDFKPSTTEATKITFK------QAIAVGFIQCL 159
>sp|P06684|CO5_MOUSE Complement C5 precursor (Hemolytic complement) [Contains:
           Complement C5 beta chain; Complement C5 alpha chain; C5a
           anaphylatoxin; Complement C5 alpha' chain]
          Length = 1680

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
 Frame = +1

Query: 208 AIVFLTIMNGVIIFLWTENYGDAKGSVYNNFKMTLKSIFTD------YKILSLGVI 357
           A+ + ++    I   WTENY       Y N  +T KS + D      Y ILS G I
Sbjct: 454 AVAYSSLSQSYIYIAWTENYKPMLVGEYLNIMVTPKSPYIDKITHYNYLILSKGKI 509
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,834,588
Number of Sequences: 369166
Number of extensions: 2117804
Number of successful extensions: 5082
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5081
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)