Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02538
(874 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BGJ0|ZDH15_MOUSE Palmitoyltransferase ZDHHC15 (Zinc fi... 236 6e-62
sp|Q96MV8|ZDH15_HUMAN Palmitoyltransferase ZDHHC15 (Zinc fi... 236 8e-62
sp|Q5W0Z9|ZDH20_HUMAN Probable palmitoyltransferase ZDHHC20... 233 7e-61
sp|Q5FWL7|ZDH15_XENLA Palmitoyltransferase ZDHHC15 (Zinc fi... 231 2e-60
sp|P59267|ZDHC2_MOUSE Palmitoyltransferase ZDHHC2 (Zinc fin... 229 8e-60
sp|Q9JKR5|ZDHC2_RAT Palmitoyltransferase ZDHHC2 (Zinc finge... 228 2e-59
sp|Q9UIJ5|ZDHC2_HUMAN Palmitoyltransferase ZDHHC2 (Zinc fin... 226 5e-59
sp|Q5Y5T1|ZDH20_MOUSE Probable palmitoyltransferase ZDHHC20... 226 6e-59
sp|Q8I0G4|YO44_CAEEL Hypothetical protein ZK757.4 in chromo... 208 2e-53
sp|O14345|YB3F_SCHPO Hypothetical protein C2F12.15c in chro... 130 6e-30
>sp|Q8BGJ0|ZDH15_MOUSE Palmitoyltransferase ZDHHC15 (Zinc finger DHHC domain-containing
protein 15) (DHHC-15)
Length = 337
Score = 236 bits (602), Expect = 6e-62
Identities = 115/287 (40%), Positives = 177/287 (61%), Gaps = 2/287 (0%)
Frame = +2
Query: 11 VYLIFLVVCWSYYAYVIEMCIIWSSSIVQKIFYIIIYHFLVLIFLYSYFKAVVTKPPPIP 190
V +I LVV WSYYAYV E+C++ S +K+ Y+I+YH + + F ++Y+K++ T P
Sbjct: 25 VLVIVLVVLWSYYAYVFELCLVTVLSPAEKVIYLILYHAIFVFFAWTYWKSIFTLPQQPN 84
Query: 191 LEFYLN-SDEHAISLDISSERDKWRKFLEELIVKKNLSIYSRDFGCNVRFCNICQLIKPD 367
+F+L+ +D+ + ER + +K + + KK L +Y+R VRFC+ C LIKPD
Sbjct: 85 QKFHLSYTDKERYK---NEERPEVQKQMLVDMAKK-LPVYTRTGSGAVRFCDRCHLIKPD 140
Query: 368 RAHHCSACGRCLLRMDHHCPWVGNCVGFHNHKFFILLLGYGSLFCLFIAATSIEFAVSWW 547
R HHCS C C+L+MDHHCPWV NC+GF N+KFF+ L Y L+CL+IA T + + +W
Sbjct: 141 RCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFFLQFLAYSVLYCLYIATTVFSYFIKYW 200
Query: 548 QDMQPKNLRGVNFLILVVISCMFFFVQISLCFYHIYLTMNNLTTLESMRKSVF-QDPDIE 724
+ P + L L+ ++CMFF + L YH +L N TTLE+ VF P+
Sbjct: 201 RGELPSVRSKFHVLFLLFVACMFFVSLVILFGYHCWLVSRNKTTLEAFCTPVFTSGPEKN 260
Query: 725 SFNLGKIENLKELMGDSVCSWFMPIHNSRGDGVTYPVKRKHTTYHSL 865
FNLG I+N++++ GD+ W +PI +S GDG ++P++ + + + L
Sbjct: 261 GFNLGFIKNIQQVFGDNKKFWLIPIGSSPGDGHSFPMRSMNESQNPL 307
>sp|Q96MV8|ZDH15_HUMAN Palmitoyltransferase ZDHHC15 (Zinc finger DHHC domain-containing
protein 15) (DHHC-15)
Length = 337
Score = 236 bits (601), Expect = 8e-62
Identities = 115/287 (40%), Positives = 176/287 (61%), Gaps = 2/287 (0%)
Frame = +2
Query: 11 VYLIFLVVCWSYYAYVIEMCIIWSSSIVQKIFYIIIYHFLVLIFLYSYFKAVVTKPPPIP 190
V +I LVV WSYYAYV E+C++ S +K+ Y+I+YH + + F ++Y+K++ T P
Sbjct: 25 VLVIVLVVLWSYYAYVFELCLVTVLSPAEKVIYLILYHAIFVFFTWTYWKSIFTLPQQPN 84
Query: 191 LEFYLN-SDEHAISLDISSERDKWRKFLEELIVKKNLSIYSRDFGCNVRFCNICQLIKPD 367
+F+L+ +D+ + ER + +K + + KK L +Y+R VRFC+ C LIKPD
Sbjct: 85 QKFHLSYTDKERYE---NEERPEVQKQMLVDMAKK-LPVYTRTGSGAVRFCDRCHLIKPD 140
Query: 368 RAHHCSACGRCLLRMDHHCPWVGNCVGFHNHKFFILLLGYGSLFCLFIAATSIEFAVSWW 547
R HHCS C C+L+MDHHCPWV NC+GF N+KFF+ L Y L+CL+IA T + + +W
Sbjct: 141 RCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFFLQFLAYSVLYCLYIATTVFSYFIKYW 200
Query: 548 QDMQPKNLRGVNFLILVVISCMFFFVQISLCFYHIYLTMNNLTTLESMRKSVF-QDPDIE 724
+ P + L L+ ++CMFF + L YH +L N TTLE+ VF P+
Sbjct: 201 RGELPSVRSKFHVLFLLFVACMFFVSLVILFGYHCWLVSRNKTTLEAFCTPVFTSGPEKN 260
Query: 725 SFNLGKIENLKELMGDSVCSWFMPIHNSRGDGVTYPVKRKHTTYHSL 865
FNLG I+N++++ GD W +PI +S GDG ++P++ + + + L
Sbjct: 261 GFNLGFIKNIQQVFGDKKKFWLIPIGSSPGDGHSFPMRSMNESQNPL 307
>sp|Q5W0Z9|ZDH20_HUMAN Probable palmitoyltransferase ZDHHC20 (Zinc finger DHHC
domain-containing protein 20) (DHHC-20)
Length = 365
Score = 233 bits (593), Expect = 7e-61
Identities = 116/283 (40%), Positives = 167/283 (59%), Gaps = 7/283 (2%)
Frame = +2
Query: 11 VYLIFLVVCWSYYAYVIEMC---IIWSSSIVQKIFYIIIYHFLVLIFLYSYFKAVVTKPP 181
V I VV WSYYAYV+E+C I + + + Y++ +H ++F++SY+ + T P
Sbjct: 19 VLFITFVVVWSYYAYVVELCVFTIFGNEENGKTVVYLVAFHLFFVMFVWSYWMTIFTSPA 78
Query: 182 PIPLEFYL-NSDEHAISLDISSERDKWRKFLEELIVK--KNLSIYSRDFGCNVRFCNICQ 352
EFYL NS++ + S ER +E++ + + L IY+ +R+C CQ
Sbjct: 79 SPSKEFYLSNSEKERYEKEFSQERQ------QEILRRAARALPIYTTSASKTIRYCEKCQ 132
Query: 353 LIKPDRAHHCSACGRCLLRMDHHCPWVGNCVGFHNHKFFILLLGYGSLFCLFIAATSIEF 532
LIKPDRAHHCSAC C+L+MDHHCPWV NCVGF N+KFF+L L Y L+CLF+AAT +E+
Sbjct: 133 LIKPDRAHHCSACDSCILKMDHHCPWVNNCVGFSNYKFFLLFLLYSLLYCLFVAATVLEY 192
Query: 533 AVSWWQDMQPKNLRGVNFLILVVISCMFFFVQISLCFYHIYLTMNNLTTLESMRKSVFQ- 709
+ +W + + L L +S MFF +SL YH +L N TT+ES R F
Sbjct: 193 FIKFWTNELTDTRAKFHVLFLFFVSAMFFISVLSLFSYHCWLVGKNRTTIESFRAPTFSY 252
Query: 710 DPDIESFNLGKIENLKELMGDSVCSWFMPIHNSRGDGVTYPVK 838
PD F+LG +N +++ GD W +PI +S GDG ++P +
Sbjct: 253 GPDGNGFSLGCSKNWRQVFGDEKKYWLLPIFSSLGDGCSFPTR 295
>sp|Q5FWL7|ZDH15_XENLA Palmitoyltransferase ZDHHC15 (Zinc finger DHHC domain-containing
protein 15 homolog) (DHHC-15)
Length = 338
Score = 231 bits (589), Expect = 2e-60
Identities = 110/277 (39%), Positives = 165/277 (59%), Gaps = 1/277 (0%)
Frame = +2
Query: 11 VYLIFLVVCWSYYAYVIEMCIIWSSSIVQKIFYIIIYHFLVLIFLYSYFKAVVTKPPPIP 190
V +I LVV WSYYAYV E+C++ ++ +K Y++I+H + L+F+++Y+KA+ T PP P
Sbjct: 25 VVIISLVVLWSYYAYVWELCLVTVTNPAEKAAYLLIFHTVFLLFIWTYWKAIFT-PPKQP 83
Query: 191 LEFYLNSDEHAISLDISSERDKWRKFLEELIVKKNLSIYSRDFGCNVRFCNICQLIKPDR 370
+ +L D + ++ + E K L +Y+R RFC+ CQ++KPDR
Sbjct: 84 TKKFLLPYAEKERYDNEERPEAQKQIVAEFARK--LPVYTRTGSGATRFCDTCQMVKPDR 141
Query: 371 AHHCSACGRCLLRMDHHCPWVGNCVGFHNHKFFILLLGYGSLFCLFIAATSIEFAVSWWQ 550
HHCS CG C+L+MDHHCPWV NC+G+ N+KFF+L L Y L+CL+I T ++ + +W
Sbjct: 142 CHHCSVCGMCVLKMDHHCPWVNNCIGYSNYKFFLLFLAYAMLYCLYIGCTVFQYFILYWT 201
Query: 551 DMQPKNLRGVNFLILVVISCMFFFVQISLCFYHIYLTMNNLTTLESMRKSVFQD-PDIES 727
D + L L+ ++ MFF + L YH +L N TTLE+ VFQ PD
Sbjct: 202 DTLSNGRAKFHVLFLLFVALMFFISLMFLFGYHCWLVSLNRTTLEAFSTPVFQSGPDKNG 261
Query: 728 FNLGKIENLKELMGDSVCSWFMPIHNSRGDGVTYPVK 838
F+LG NL+++ G W +P+ S GDG TYP++
Sbjct: 262 FHLGIRRNLEQVFGKERKLWLIPVFTSLGDGFTYPMR 298
>sp|P59267|ZDHC2_MOUSE Palmitoyltransferase ZDHHC2 (Zinc finger DHHC domain-containing
protein 2) (DHHC-2)
Length = 366
Score = 229 bits (584), Expect = 8e-60
Identities = 110/277 (39%), Positives = 171/277 (61%), Gaps = 3/277 (1%)
Frame = +2
Query: 11 VYLIFLVVCWSYYAYVIEMCIIWSSSIVQKIFYIIIYHFLVLIFLYSYFKAVVTKPPPIP 190
V I L++ WSYYAY I++CI+ +I +++ ++ YH L +F++SY+K + T P
Sbjct: 22 VVFISLLLGWSYYAYAIQLCIVSMENIGEQVVCLMAYHLLFAMFVWSYWKTIFTLPMNPS 81
Query: 191 LEFYLNSDEHAISLDISSERDKWRKFLEELIVK--KNLSIYSRDFGCNVRFCNICQLIKP 364
EF+L+ E + ER+ + +E++ + K+L IY+R +R+C+ CQLIKP
Sbjct: 82 KEFHLSYAEKELL-----EREPRGEAHQEVLRRAAKDLPIYTRTMSGAIRYCDRCQLIKP 136
Query: 365 DRAHHCSACGRCLLRMDHHCPWVGNCVGFHNHKFFILLLGYGSLFCLFIAATSIEFAVSW 544
DR HHCS C +C+L+MDHHCPWV NCVGF N+KFF+L L Y L+CLFIAAT +++ + +
Sbjct: 137 DRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAYSLLYCLFIAATDLQYFIRF 196
Query: 545 WQDMQPKNLRGVNFLILVVISCMFFFVQISLCFYHIYLTMNNLTTLESMRKSVFQ-DPDI 721
W + P + + L + MF SL YH +L N +TLE+ R VF+ D
Sbjct: 197 WTNGLPDTQAKFHIMFLFFAAAMFSVSLSSLFGYHCWLVSKNKSTLEAFRNPVFRHGTDK 256
Query: 722 ESFNLGKIENLKELMGDSVCSWFMPIHNSRGDGVTYP 832
F+LG +N++++ GD W +P+ +S+GDG ++P
Sbjct: 257 NGFSLGFSKNMRQVFGDEKKYWLLPVFSSQGDGCSFP 293
>sp|Q9JKR5|ZDHC2_RAT Palmitoyltransferase ZDHHC2 (Zinc finger DHHC domain-containing
protein 2) (DHHC-2)
Length = 366
Score = 228 bits (581), Expect = 2e-59
Identities = 110/277 (39%), Positives = 171/277 (61%), Gaps = 3/277 (1%)
Frame = +2
Query: 11 VYLIFLVVCWSYYAYVIEMCIIWSSSIVQKIFYIIIYHFLVLIFLYSYFKAVVTKPPPIP 190
V I L++ WSYYAY I++CI+ +I +++ ++ YH L +F++SY+K + T P
Sbjct: 22 VVFISLLLGWSYYAYAIQLCIVSMENIGEQVVCLMAYHLLFAMFVWSYWKTIFTLPMNPS 81
Query: 191 LEFYLNSDEHAISLDISSERDKWRKFLEELIVK--KNLSIYSRDFGCNVRFCNICQLIKP 364
EF+L+ E + ER+ + +E++ + K+L IY+R +R+C+ C+LIKP
Sbjct: 82 KEFHLSYAEKELL-----EREPRGEAHQEVLRRAAKDLPIYTRTMSGAIRYCDRCRLIKP 136
Query: 365 DRAHHCSACGRCLLRMDHHCPWVGNCVGFHNHKFFILLLGYGSLFCLFIAATSIEFAVSW 544
DR HHCS C +C+L+MDHHCPWV NCVGF N+KFF+L L Y L+CLFIAAT +++ + +
Sbjct: 137 DRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAYSLLYCLFIAATDLQYFIRF 196
Query: 545 WQDMQPKNLRGVNFLILVVISCMFFFVQISLCFYHIYLTMNNLTTLESMRKSVFQ-DPDI 721
W + P + + L + MF SL YH +L N +TLE+ R VF+ D
Sbjct: 197 WTNGLPDTQAKFHIMFLFFAAAMFSVSLSSLFGYHCWLVSKNKSTLEAFRNPVFRHGTDK 256
Query: 722 ESFNLGKIENLKELMGDSVCSWFMPIHNSRGDGVTYP 832
F+LG +N++++ GD W +PI +S+GDG ++P
Sbjct: 257 NGFSLGFSKNMRQVFGDEKKYWLLPIFSSQGDGCSFP 293
>sp|Q9UIJ5|ZDHC2_HUMAN Palmitoyltransferase ZDHHC2 (Zinc finger DHHC domain-containing
protein 2) (DHHC-2) (Zinc finger protein 372) (Reduced
expression associated with metastasis protein) (Ream)
(Reduced expression in cancer protein) (Rec)
Length = 367
Score = 226 bits (577), Expect = 5e-59
Identities = 110/277 (39%), Positives = 169/277 (61%), Gaps = 3/277 (1%)
Frame = +2
Query: 11 VYLIFLVVCWSYYAYVIEMCIIWSSSIVQKIFYIIIYHFLVLIFLYSYFKAVVTKPPPIP 190
V I L++ WSYYAY I++CI+ + +++ ++ YH L +F++SY+K + T P
Sbjct: 23 VVFITLLLGWSYYAYAIQLCIVSMENTGEQVVCLMAYHLLFAMFVWSYWKTIFTLPMNPS 82
Query: 191 LEFYLNSDEHAISLDISSERDKWRKFLEELIVK--KNLSIYSRDFGCNVRFCNICQLIKP 364
EF+L+ E + ER+ + +E++ + K+L IY+R +R+C+ CQLIKP
Sbjct: 83 KEFHLSYAEKDLL-----EREPRGEAHQEVLRRAAKDLPIYTRTMSGAIRYCDRCQLIKP 137
Query: 365 DRAHHCSACGRCLLRMDHHCPWVGNCVGFHNHKFFILLLGYGSLFCLFIAATSIEFAVSW 544
DR HHCS C +C+L+MDHHCPWV NCVGF N+KFF+L L Y L+CLFIAAT +++ + +
Sbjct: 138 DRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAYSLLYCLFIAATDLQYFIKF 197
Query: 545 WQDMQPKNLRGVNFLILVVISCMFFFVQISLCFYHIYLTMNNLTTLESMRKSVFQ-DPDI 721
W + P + + L + MF SL YH +L N +TLE+ R VF+ D
Sbjct: 198 WTNGLPDTQAKFHIMFLFFAAAMFSVSLSSLFGYHCWLVSKNKSTLEAFRSPVFRHGTDK 257
Query: 722 ESFNLGKIENLKELMGDSVCSWFMPIHNSRGDGVTYP 832
F+LG +N++++ GD W +PI +S GDG ++P
Sbjct: 258 NGFSLGFSKNMRQVFGDEKKYWLLPIFSSLGDGCSFP 294
>sp|Q5Y5T1|ZDH20_MOUSE Probable palmitoyltransferase ZDHHC20 (Zinc finger DHHC
domain-containing protein 20) (DHHC-20)
Length = 380
Score = 226 bits (576), Expect = 6e-59
Identities = 123/296 (41%), Positives = 172/296 (58%), Gaps = 20/296 (6%)
Frame = +2
Query: 11 VYLIFLVVCWSYYAYVIEMCIIWSSSIVQK---IFYIIIYHFLVLIFLYSYFKAVVTKPP 181
V I VV WSYYAYV+E+C+ S +K + Y++ +H ++F++SY+ + T P
Sbjct: 19 VLFITFVVVWSYYAYVVELCVSTISRTGEKGKTVVYLVAFHLFFVMFVWSYWMTIFTSPA 78
Query: 182 PIPLEFYL-NSDEHAISLDISSERDKWRKFLEELIVKKNLSIYSRDFGCNVRFCNICQLI 358
EFYL NS++ + S ER + L ++L IY+ +R+C CQLI
Sbjct: 79 SPSKEFYLSNSEKERYEKEFSQERQQ--DILRR--AARDLPIYTTSASKAIRYCEKCQLI 134
Query: 359 KPDRAHHCSACGRCLLRMDHHCPWVGNCVGFHNHKFFILLLGYGSLFCLFIAATSIEFAV 538
KPDRAHHCSAC RC+L+MDHHCPWV NCVGF N+KFF+L L Y L+CLF+AAT +E+ +
Sbjct: 135 KPDRAHHCSACDRCVLKMDHHCPWVNNCVGFTNYKFFMLFLLYSLLYCLFVAATVLEYFI 194
Query: 539 SWW-------QDMQPKNLRGV-NF-------LILVVISCMFFFVQISLCFYHIYLTMNNL 673
+W + PKN V NF L L +S MFF +SL YH +L N
Sbjct: 195 KFWTLCRRKSTENCPKNEPTVLNFPSAKFHVLFLFFVSAMFFVSVLSLFSYHCWLVGKNR 254
Query: 674 TTLESMRKSVFQ-DPDIESFNLGKIENLKELMGDSVCSWFMPIHNSRGDGVTYPVK 838
TT+ES R +F D F+LG +N +++ GD W +PI +S GDG ++P +
Sbjct: 255 TTIESFRAPMFSYGIDGNGFSLGCSKNWRQVFGDEKKYWLVPIFSSLGDGCSFPAR 310
>sp|Q8I0G4|YO44_CAEEL Hypothetical protein ZK757.4 in chromosome III
Length = 403
Score = 208 bits (529), Expect = 2e-53
Identities = 105/297 (35%), Positives = 163/297 (54%), Gaps = 24/297 (8%)
Frame = +2
Query: 11 VYLIFLVVCWSYYAYVIEMCIIWSSSIVQKIFYIIIYHFLVLIFLYSYFKAVVTKPPPIP 190
V L+ L W YAY E+CI+ + Q+I Y+ I++ L+++F SY + V TK P
Sbjct: 25 VVLVSLATGWGIYAYTYELCILSIDNWPQRIIYLFIFYALLILFYTSYLRTVYTKAWKPP 84
Query: 191 LEFYLNSDEHAISLDISSERDKWRKFLEELIVKKNLSIYSRDFGCNVRFCNICQLIKPDR 370
++ + A + + + + FL ++ +++L++ R F +RFC+ C IKPDR
Sbjct: 85 QKYCIEGASKATYESVKDDERQLQLFLSDIARERDLTLLVRGFDHGIRFCDKCCCIKPDR 144
Query: 371 AHHCSACGRCLLRMDHHCPWVGNCVGFHNHKFFILLLGYGSLFCLFIAATSIEFAVSWWQ 550
+HHCS C +C+L+ DHHCPWV NCV F N+K+FIL L YG +FC++IAAT++ + +W+
Sbjct: 145 SHHCSMCEQCVLKFDHHCPWVNNCVNFGNYKYFILFLAYGFIFCIWIAATTLPSFIDFWR 204
Query: 551 ---DMQPKNLRGVNFLI--------------------LVVISCMFFFVQISLCFYHIYLT 661
DM K ++ +I L+ +SCMF L FYH+YLT
Sbjct: 205 HEYDMNKKQYDSIDSVIQRNLKHLHTVLSNGRFPLVFLLFLSCMFSLSLSFLFFYHLYLT 264
Query: 662 MNNLTTLESMRKSVFQDPDI-ESFNLGKIENLKELMGDSVCSWFMPIHNSRGDGVTY 829
N TT+ES R + ++FN G N +E+ G WF+P+ +S GDG +
Sbjct: 265 AKNRTTVESFRAPMIDGKYAKDAFNHGIRANYREIFGSHPLYWFLPVPSSIGDGCKF 321
>sp|O14345|YB3F_SCHPO Hypothetical protein C2F12.15c in chromosome II
Length = 329
Score = 130 bits (326), Expect = 6e-30
Identities = 69/179 (38%), Positives = 97/179 (54%), Gaps = 4/179 (2%)
Frame = +2
Query: 332 RFCNICQLIKPDRAHHCSACGRCLLRMDHHCPWVGNCVGFHNHKFFILLLGYGSLFCLFI 511
RFC CQ K DR+HHCS C +C+LRMDHHC W NCVGF NHKFF L Y +L+ + +
Sbjct: 97 RFCEKCQEYKCDRSHHCSQCNKCILRMDHHCMWFKNCVGFRNHKFFFLECFYLNLYSICV 156
Query: 512 AATSIEFAVSWWQDMQPKNLRGVNFL---ILVVISCMFFFVQISLCFYHIYLTMNNLTTL 682
++ A++ + N+ + + L + V + FYH L ++NL+TL
Sbjct: 157 LYSTF-VAITKTFTAEGANISAIYLVFWGFLFAFAVGMSIVMTAFTFYHTSLLIHNLSTL 215
Query: 683 ESMRKSVFQ-DPDIESFNLGKIENLKELMGDSVCSWFMPIHNSRGDGVTYPVKRKHTTY 856
ESM S + + FN+G EN ++MG S W +P NS G+GV YP+ Y
Sbjct: 216 ESMSSSWSRYTHSTQPFNVGWYENWCQIMGKSPFLWLLPFPNSIGEGVEYPLNANALPY 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,948,055
Number of Sequences: 369166
Number of extensions: 1983273
Number of successful extensions: 5789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5659
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)