Planaria EST Database


DrC_02520

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02520
         (764 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96AE4|FUBP1_HUMAN  Far upstream element-binding protein ...    50   7e-06
sp|Q91WJ8|FUBP1_MOUSE  Far upstream element-binding protein ...    48   3e-05
sp|Q96I24|FUBP3_HUMAN  Far upstream element-binding protein ...    39   0.015
sp|Q8UVD9|ZBP2_CHICK  Zipcode-binding protein 2                    39   0.015
sp|Q99PF5|FUBP2_RAT  Far upstream element-binding protein 2 ...    39   0.020
sp|Q92945|FUBP2_HUMAN  Far upstream element-binding protein ...    39   0.020
sp|Q7ZT98|CRVP_OPHHA  Ophanin precursor (Opharin)                  30   7.2  
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 (FUSE-binding protein 1)
           (FBP) (DNA helicase V) (HDH V)
          Length = 643

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 22/44 (50%), Positives = 28/44 (63%)
 Frame = +2

Query: 389 YDNIYSGWTQGAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 520
           Y   +  + +    A+PAPT  P  GQPDYSAAWAEYYR+Q  +
Sbjct: 581 YTKAWEEYYKKMGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAAY 624

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 437 PAPTINPQTGQPDYSAAWAEYYRRQG 514
           PAP      GQ DY+ AW EYY++ G
Sbjct: 573 PAPA-----GQVDYTKAWEEYYKKMG 593
>sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein 1 (FUSE-binding protein 1)
           (FBP)
          Length = 651

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 21/44 (47%), Positives = 27/44 (61%)
 Frame = +2

Query: 389 YDNIYSGWTQGAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 520
           Y   +  + +    A+PAP   P  GQPDYSAAWAEYYR+Q  +
Sbjct: 578 YTKAWEEYYKKMGQAVPAPAGAPPGGQPDYSAAWAEYYRQQAAY 621

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 437 PAPTINPQTGQPDYSAAWAEYYRRQG 514
           PAP      GQ DY+ AW EYY++ G
Sbjct: 570 PAPA-----GQVDYTKAWEEYYKKMG 590
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 (FUSE-binding protein 3)
          Length = 572

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 389 YDNIYSGWTQGAASAMPAPTINPQTGQPDYSAAWAEYYRRQ 511
           + + Y  W Q     +P+    PQ+ QP+YS AW +YY++Q
Sbjct: 488 WGSTYQAWQQ-PTQQVPSQQSQPQSSQPNYSKAWEDYYKKQ 527

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +2

Query: 422 AASAMPAPTINPQTGQPDYSAAWAEYYRRQ 511
           AASA P  +       PDY+ AWAEYYR+Q
Sbjct: 530 AASAAPQAS-----SPPDYTMAWAEYYRQQ 554
>sp|Q8UVD9|ZBP2_CHICK Zipcode-binding protein 2
          Length = 769

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 19/36 (52%), Positives = 21/36 (58%)
 Frame = +2

Query: 413 TQGAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 520
           T G   A P P       QPDYSAAWAEYYR+Q  +
Sbjct: 719 TGGGPGAPPGP-------QPDYSAAWAEYYRQQAAY 747

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
 Frame = +2

Query: 380 SGIYDNIYS---GWTQGAASAMPAPTIN------PQTGQPDYSAAWAEYYRRQG 514
           +G Y + Y    G   G   A  AP +       P TGQ DY+ AW EYY++ G
Sbjct: 635 AGYYSHYYQQPPGPVPGQPPAPTAPPVQGEPPQPPPTGQSDYTKAWEEYYKKIG 688
>sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
           type splicing regulatory protein) (KSRP) (MAP2 RNA
           trans-acting protein 1) (MARTA1)
          Length = 721

 Score = 38.5 bits (88), Expect = 0.020
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = +2

Query: 389 YDNIYSGWTQGAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 520
           ++  Y    Q A    P     P   QPDYSAAWAEYYR+Q  +
Sbjct: 649 WEEYYKKQAQVATGGGPGA---PPGSQPDYSAAWAEYYRQQAAY 689

 Score = 34.7 bits (78), Expect = 0.29
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 422 AASAMPAPTINPQTGQPDYSAAWAEYYRRQG 514
           A  A   P   P TGQ DY+ AW EYY++ G
Sbjct: 601 APPAQGEPPQPPPTGQSDYTKAWEEYYKKIG 631
>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
           type splicing regulatory protein) (KSRP) (p75)
          Length = 707

 Score = 38.5 bits (88), Expect = 0.020
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = +2

Query: 389 YDNIYSGWTQGAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 520
           ++  Y    Q A    P     P   QPDYSAAWAEYYR+Q  +
Sbjct: 646 WEEYYKKQAQVATGGGPGA---PPGSQPDYSAAWAEYYRQQAAY 686

 Score = 34.7 bits (78), Expect = 0.29
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 422 AASAMPAPTINPQTGQPDYSAAWAEYYRRQG 514
           A  A   P   P TGQ DY+ AW EYY++ G
Sbjct: 598 APPAQGEPPQPPPTGQSDYTKAWEEYYKKIG 628
>sp|Q7ZT98|CRVP_OPHHA Ophanin precursor (Opharin)
          Length = 239

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 535 DSATSSTRWSS-CNYGSCPDYTTTYRIIQC 621
           ++A+++ RW+S CN G  PDY+     I+C
Sbjct: 62  EAASNAERWASNCNLGHSPDYSRVLEGIEC 91
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,708,064
Number of Sequences: 369166
Number of extensions: 1115593
Number of successful extensions: 2751
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2746
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7066925600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)