Planaria EST Database


DrC_02518

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02518
         (513 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O13830|PTH2_SCHPO  Probable peptidyl-tRNA hydrolase 2 (PT...   159   3e-39
sp|Q8R2Y8|PTH2_MOUSE  Peptidyl-tRNA hydrolase 2, mitochondri...   147   2e-35
sp|Q9Y3E5|PTH2_HUMAN  Peptidyl-tRNA hydrolase 2, mitochondri...   143   2e-34
sp|P34222|PTH2_YEAST  Peptidyl-tRNA hydrolase 2 (PTH 2)           124   1e-28
sp|O97067|PTH2_DROME  Probable peptidyl-tRNA hydrolase 2 (PT...   110   3e-24
sp|Q5JDB8|PTH_PYRKO  Peptidyl-tRNA hydrolase (PTH)                107   2e-23
sp|Q8U0N0|PTH_PYRFU  Peptidyl-tRNA hydrolase (PTH)                106   3e-23
sp|O74017|PTH_PYRHO  Peptidyl-tRNA hydrolase (PTH)                106   4e-23
sp|Q976I0|PTH_SULTO  Peptidyl-tRNA hydrolase (PTH)                105   6e-23
sp|Q9HLW6|PTH_THEAC  Peptidyl-tRNA hydrolase (PTH)                101   9e-22
>sp|O13830|PTH2_SCHPO Probable peptidyl-tRNA hydrolase 2 (PTH 2)
          Length = 205

 Score =  159 bits (403), Expect = 3e-39
 Identities = 76/116 (65%), Positives = 97/116 (83%)
 Frame = +3

Query: 147 ESKMVLVVRTDLGMGKGKVAAQCAHAALGCYKSGLKKAPQIVKAWELSGQAKVVVKTENE 326
           ++KMVLVVRTDLGM KGK+AAQCAHAAL CYK      P +V+ WE +GQAK+ ++ + E
Sbjct: 90  QTKMVLVVRTDLGMTKGKIAAQCAHAALACYKIASAVDPDLVRIWENAGQAKITLQAQTE 149

Query: 327 ESLYELQAMAISLGLISKVVHDAGRTQIAAGSATVVGIGPGPVSLVNKVTGQLKLY 494
           E+L  LQA A+SLGL ++V+HDAGRTQIA+GSATV+GIGPGPVS++N+VTG LKL+
Sbjct: 150 ETLELLQAQAMSLGLCARVIHDAGRTQIASGSATVLGIGPGPVSVINEVTGSLKLF 205
>sp|Q8R2Y8|PTH2_MOUSE Peptidyl-tRNA hydrolase 2, mitochondrial precursor (PTH 2)
          Length = 181

 Score =  147 bits (370), Expect = 2e-35
 Identities = 80/168 (47%), Positives = 105/168 (62%), Gaps = 15/168 (8%)
 Frame = +3

Query: 36  SAGLGVLLGIIVTWKFKPKPFRNVELMPQEMTSHT---------------SEESKMVLVV 170
           S   GV  G+ + W  +     ++ + PQ  TS                 S E KM+LVV
Sbjct: 18  SLAAGVACGMCLGWGLRS----HLGMFPQNSTSEANRDTETGTEASILGESGEYKMILVV 73

Query: 171 RTDLGMGKGKVAAQCAHAALGCYKSGLKKAPQIVKAWELSGQAKVVVKTENEESLYELQA 350
           RTDL MGKGKVAAQC+HAA+  YK   +++PQ++K WE  GQ KVVVK  +E++L +L  
Sbjct: 74  RTDLKMGKGKVAAQCSHAAVSAYKQTQRRSPQVLKEWEYCGQPKVVVKAPDEDTLIQLLT 133

Query: 351 MAISLGLISKVVHDAGRTQIAAGSATVVGIGPGPVSLVNKVTGQLKLY 494
            A +LGL   ++ DAGRTQI  GS TV+GIGPGPV L+++VTG LKLY
Sbjct: 134 HAKTLGLTVSLIQDAGRTQIEPGSRTVLGIGPGPVELIDEVTGHLKLY 181
>sp|Q9Y3E5|PTH2_HUMAN Peptidyl-tRNA hydrolase 2, mitochondrial precursor (PTH 2) (Bcl-2
           inhibitor of transcription 1)
          Length = 179

 Score =  143 bits (361), Expect = 2e-34
 Identities = 81/163 (49%), Positives = 103/163 (63%), Gaps = 13/163 (7%)
 Frame = +3

Query: 45  LGVLLGIIVTWKFKPKPFRNVELMPQEMTS--HTSEES-----------KMVLVVRTDLG 185
           +GV  G+ + W  +        ++P+  TS  HT  ES           KM+LVVR DL 
Sbjct: 21  VGVACGMCLGWSLRVC----FGMLPKSKTSKTHTDTESEASILGDSGEYKMILVVRNDLK 76

Query: 186 MGKGKVAAQCAHAALGCYKSGLKKAPQIVKAWELSGQAKVVVKTENEESLYELQAMAISL 365
           MGKGKVAAQC+HAA+  YK   ++ P+++K WE  GQ KVVVK  +EE+L  L A A  L
Sbjct: 77  MGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAHAKML 136

Query: 366 GLISKVVHDAGRTQIAAGSATVVGIGPGPVSLVNKVTGQLKLY 494
           GL   ++ DAGRTQIA GS TV+GIGPGP  L++KVTG LKLY
Sbjct: 137 GLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY 179
>sp|P34222|PTH2_YEAST Peptidyl-tRNA hydrolase 2 (PTH 2)
          Length = 214

 Score =  124 bits (311), Expect = 1e-28
 Identities = 62/122 (50%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
 Frame = +3

Query: 147 ESKMVLVVRTDLGMGKGKVAAQCAHAALGCYK------SGLKKAPQIVKAWELSGQAKVV 308
           E +M LV+R DLGM KGK+AAQC HAAL C++      +     P + + W  +GQAK+ 
Sbjct: 93  EVRMALVIRQDLGMTKGKIAAQCCHAALSCFRHIATNPARASYNPIMTQRWLNAGQAKIT 152

Query: 309 VKTENEESLYELQAMAISLGLISKVVHDAGRTQIAAGSATVVGIGPGPVSLVNKVTGQLK 488
           +K  ++ ++ EL A AISLG+ + V+HDAGRTQIAAGSATV+G+GP P ++++++TG LK
Sbjct: 153 LKCPDKFTMDELYAKAISLGVNAAVIHDAGRTQIAAGSATVLGLGPAPKAVLDQITGDLK 212

Query: 489 LY 494
           LY
Sbjct: 213 LY 214
>sp|O97067|PTH2_DROME Probable peptidyl-tRNA hydrolase 2 (PTH 2)
          Length = 186

 Score =  110 bits (274), Expect = 3e-24
 Identities = 53/117 (45%), Positives = 79/117 (67%)
 Frame = +3

Query: 141 SEESKMVLVVRTDLGMGKGKVAAQCAHAALGCYKSGLKKAPQIVKAWELSGQAKVVVKTE 320
           ++  KMVLVVR DL MGKGK+AAQC H A+G Y+  + + P+++++WE  G AK+ V+ E
Sbjct: 69  NDNFKMVLVVRNDLKMGKGKIAAQCGHGAVGAYQRAVVRTPRLLRSWENCGCAKIAVRVE 128

Query: 321 NEESLYELQAMAISLGLISKVVHDAGRTQIAAGSATVVGIGPGPVSLVNKVTGQLKL 491
           +E  L  ++  A    L + ++ DAGRTQI A S TV+ +GP   + +++VTG LKL
Sbjct: 129 SEAELMAIKKEAERQQLNTCLIRDAGRTQIEANSKTVLAVGPAAAADIDRVTGHLKL 185
>sp|Q5JDB8|PTH_PYRKO Peptidyl-tRNA hydrolase (PTH)
          Length = 118

 Score =  107 bits (266), Expect = 2e-23
 Identities = 57/113 (50%), Positives = 73/113 (64%)
 Frame = +3

Query: 153 KMVLVVRTDLGMGKGKVAAQCAHAALGCYKSGLKKAPQIVKAWELSGQAKVVVKTENEES 332
           K V+V R DL + KGK A Q AH A+       K+ P+  KAW   GQ KVVVK EN E 
Sbjct: 5   KQVIVARKDLKLSKGKFAVQVAHGAVTAAIKAQKEKPEWFKAWFHEGQKKVVVKAENLEE 64

Query: 333 LYELQAMAISLGLISKVVHDAGRTQIAAGSATVVGIGPGPVSLVNKVTGQLKL 491
           L++L+A A  LGL + ++ DAG T+I  G+ TV+ IGPGP  +V+KVTG LKL
Sbjct: 65  LFKLKAEAEKLGLPTALIKDAGLTEIPPGTVTVLAIGPGPEEVVDKVTGHLKL 117
>sp|Q8U0N0|PTH_PYRFU Peptidyl-tRNA hydrolase (PTH)
          Length = 119

 Score =  106 bits (265), Expect = 3e-23
 Identities = 55/113 (48%), Positives = 75/113 (66%)
 Frame = +3

Query: 153 KMVLVVRTDLGMGKGKVAAQCAHAALGCYKSGLKKAPQIVKAWELSGQAKVVVKTENEES 332
           K V+V R+DL + KGK+A Q AH A+       KK  +  +AW   GQ KVVVK +NEE 
Sbjct: 6   KQVIVARSDLKLSKGKLAVQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKAQNEEE 65

Query: 333 LYELQAMAISLGLISKVVHDAGRTQIAAGSATVVGIGPGPVSLVNKVTGQLKL 491
           L++L++ A  LGL + ++ DAG T+I  G+ TV+ IGPGP  +V+KVTG LKL
Sbjct: 66  LFKLKSEAEKLGLPTALIRDAGLTEIPPGTITVLAIGPGPEEVVDKVTGHLKL 118
>sp|O74017|PTH_PYRHO Peptidyl-tRNA hydrolase (PTH)
          Length = 121

 Score =  106 bits (264), Expect = 4e-23
 Identities = 55/113 (48%), Positives = 74/113 (65%)
 Frame = +3

Query: 153 KMVLVVRTDLGMGKGKVAAQCAHAALGCYKSGLKKAPQIVKAWELSGQAKVVVKTENEES 332
           K V+V R DL + KGK+AAQ AH A+       KK  +  +AW   GQ KVVVK E+EE 
Sbjct: 8   KQVIVARADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVESEEE 67

Query: 333 LYELQAMAISLGLISKVVHDAGRTQIAAGSATVVGIGPGPVSLVNKVTGQLKL 491
           L++L+A A  LGL + ++ DAG T+I  G+ TV+ +GP P  +V+KVTG LKL
Sbjct: 68  LFKLKAEAEKLGLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKL 120
>sp|Q976I0|PTH_SULTO Peptidyl-tRNA hydrolase (PTH)
          Length = 121

 Score =  105 bits (262), Expect = 6e-23
 Identities = 57/118 (48%), Positives = 75/118 (63%), Gaps = 4/118 (3%)
 Frame = +3

Query: 150 SKMVLVVRTDLGMGKGKVAAQCAHAALGCYKSGLKKAPQIVKAWELS----GQAKVVVKT 317
           +KMV+VVRTDL MGKGK+AAQ AHAA+      L  +  + K W       GQ K+VVK 
Sbjct: 3   TKMVIVVRTDLDMGKGKIAAQVAHAAVSLVLDILNSSNSLWKEWLYKWLEEGQPKIVVKV 62

Query: 318 ENEESLYELQAMAISLGLISKVVHDAGRTQIAAGSATVVGIGPGPVSLVNKVTGQLKL 491
            + + L +    AI L L + ++ DAG+TQI  G+ T +GIGP PV LV+K+TG LKL
Sbjct: 63  PSLDELNKRYEKAIELNLPTTIIQDAGKTQIEPGTITCIGIGPAPVELVDKITGDLKL 120
>sp|Q9HLW6|PTH_THEAC Peptidyl-tRNA hydrolase (PTH)
          Length = 117

 Score =  101 bits (252), Expect = 9e-22
 Identities = 48/113 (42%), Positives = 73/113 (64%)
 Frame = +3

Query: 153 KMVLVVRTDLGMGKGKVAAQCAHAALGCYKSGLKKAPQIVKAWELSGQAKVVVKTENEES 332
           KMV+ VR DL MGKGK+AAQ AHAA+ C    +K    +   W   GQ K+VVK  + + 
Sbjct: 4   KMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLDE 63

Query: 333 LYELQAMAISLGLISKVVHDAGRTQIAAGSATVVGIGPGPVSLVNKVTGQLKL 491
           + E++ MA S+G+++++V D G TQ+  G+ T +G+GP     ++K+TG+ KL
Sbjct: 64  IMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKL 116
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,362,492
Number of Sequences: 369166
Number of extensions: 1167561
Number of successful extensions: 3490
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3472
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3304927425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)