Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02495
(953 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BSM7|LAT3_MOUSE Large neutral amino acids transporter ... 38 0.037
sp|Q92G96|NUOM_RICCN NADH-quinone oxidoreductase chain M (N... 37 0.11
sp|P21422|RPOC_PLAFA DNA-directed RNA polymerase beta' chain 36 0.14
sp|Q9ZCG0|NUOM_RICPR NADH-quinone oxidoreductase chain M (N... 36 0.18
sp|P60686|MNHD_STAAU Na(+)/H(+) antiporter subunit D (Mnh c... 34 0.69
sp|O75387|LAT3_HUMAN Large neutral amino acids transporter ... 33 1.5
sp|P50391|NPY4R_HUMAN Neuropeptide Y receptor type 4 (NPY4-... 32 3.4
sp|Q89AT1|CVPA_BUCBP Colicin V production protein homolog 32 3.4
sp|Q8NH70|OR4AG_HUMAN Olfactory receptor 4A16 31 4.5
sp|Q97X94|UPPP_SULSO Undecaprenyl-diphosphatase (Undecapren... 31 4.5
>sp|Q8BSM7|LAT3_MOUSE Large neutral amino acids transporter small subunit 3 (L-type amino
acid transporter 3) (Solute carrier family 43 member 1)
Length = 564
Score = 38.1 bits (87), Expect = 0.037
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 2/125 (1%)
Frame = -3
Query: 381 LKRIYNEINSSFFLPCCLCSTAMVSVSLLIFIRNKLAVYLVFICMTITRSLLFSINAAYI 202
++++ N IN+ L + +V + I+N L F+ TI R S
Sbjct: 418 VQKLTNAINAF-----TLTNILLVGFGIACLIKNLHLQLLAFVLHTIVRGFFHSACGGLY 472
Query: 201 FMAFPKKYFGTIIGSVFFFAGFINLFQQLII--QFSSKDSNPDILNYILAIICFFTFLHG 28
FP +FGT+ G + L QQL+ +P +N L ++ F FL
Sbjct: 473 AAVFPSNHFGTLTGLQSLISAVFALLQQLLFMAMVGPLHGDPFWVNLGLLLLSFLGFLLP 532
Query: 27 IFLKF 13
+L +
Sbjct: 533 SYLYY 537
>sp|Q92G96|NUOM_RICCN NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M)
Length = 493
Score = 36.6 bits (83), Expect = 0.11
Identities = 48/182 (26%), Positives = 68/182 (37%), Gaps = 9/182 (4%)
Frame = -3
Query: 555 SSQLKYLFPEEPNTVDNLLSISNVFFMGSLFISPIFGILLDYYQKTIFISLSKKSNLTLK 376
SS Y F E +D I F +G IS +F +L + I S T+K
Sbjct: 61 SSNPAYQFVERYAWLDK---IGLEFHVGVDGISILFVVLTSFLTLICIIG----SLFTVK 113
Query: 375 RIYNEINSSFFLPCCLCSTAMVSVSLLIFIRNKLAVYLVFICMTITRSLLFSI----NAA 208
+ E F L C A SV+LL+F YL F + + ++ + N
Sbjct: 114 KYIKEYLVCFLLMESFCIGAFTSVNLLLF-------YLFFEAILVPMYIIIGVWGGKNRI 166
Query: 207 YIFMAFPKKYFGTIIGSVFFFAGFINLFQQ-----LIIQFSSKDSNPDILNYILAIICFF 43
Y + F + T GSVFF I ++ + L F D+ P IL F
Sbjct: 167 YAALKF---FLYTFFGSVFFLLSLIYIYSKMHSFDLTYIFQLTDNIPLFAQQILWWAIFI 223
Query: 42 TF 37
F
Sbjct: 224 AF 225
>sp|P21422|RPOC_PLAFA DNA-directed RNA polymerase beta' chain
Length = 575
Score = 36.2 bits (82), Expect = 0.14
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 12/175 (6%)
Frame = -3
Query: 507 NLLSISNVFFMGSLFISPIFGILLDYYQKTIFISLSKKSNLTLKRIYNEINSSFFLPCCL 328
N + I V ++ + IL + + IF + K + K++YN N SFFL C
Sbjct: 32 NKIIIGEVLIPNTINFNTGLPILNGLFCEKIFDYMYKWNCNCNKKMYNINNFSFFLYCKF 91
Query: 327 CSTAMVSVSLLIFIRNKLAVYLVFICMTI-----------TRSLLFSINAAYI-FMAFPK 184
C L+I I K + +F+ + I SLL + N Y+ F+ + K
Sbjct: 92 CKN-----KLIININRKYKLGFIFLNIPILHLWYLTGPLKVASLLLNKNVFYLKFLIYYK 146
Query: 183 KYFGTIIGSVFFFAGFINLFQQLIIQFSSKDSNPDILNYILAIICFFTFLHGIFL 19
+F I +F+ + LF ++ + K +I+ Y+ + + L I L
Sbjct: 147 YFFSNIKYKQYFY--YNKLFSKINLY---KKKYKNIIQYLFSHNILYKKLQNINL 196
>sp|Q9ZCG0|NUOM_RICPR NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M)
(NDH-1, chain M)
Length = 491
Score = 35.8 bits (81), Expect = 0.18
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Frame = -3
Query: 477 MGSLFISPIFGILLDYYQKTIFISLSK--KSNLTLKRIYNEINSSFFLPCCLCSTAMVSV 304
+G F + GI + + T F++L S T+K+ E F L LC A S+
Sbjct: 76 IGLEFHVGVDGIAIFFVVLTSFLTLICIIGSLFTIKKYIKEYLVCFLLMESLCIGAFTSI 135
Query: 303 SLLIFIRNKLAVYLVFICMTITRSLLFSI----NAAYIFMAFPKKYFGTIIGSVFFFAGF 136
+LL+F YL F + + ++ + N Y + F + T GSVFF
Sbjct: 136 NLLLF-------YLFFEAILVPMYIIIGVWGGDNRIYAALKF---FLYTFFGSVFFLLAL 185
Query: 135 INLFQQL 115
I ++ ++
Sbjct: 186 IYIYSKI 192
>sp|P60686|MNHD_STAAU Na(+)/H(+) antiporter subunit D (Mnh complex subunit D)
sp|P60687|MNHD_STAAW Na(+)/H(+) antiporter subunit D (Mnh complex subunit D)
sp|P60685|MNHD_STAAN Na(+)/H(+) antiporter subunit D (Mnh complex subunit D)
sp|P60684|MNHD_STAAM Na(+)/H(+) antiporter subunit D (Mnh complex subunit D)
Length = 498
Score = 33.9 bits (76), Expect = 0.69
Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 21/180 (11%)
Frame = -3
Query: 504 LLSISNVFFMGSLFISPIFG--ILLDYYQKTIFISLSKKSNLTLKRIY-NEINSSFFLPC 334
L+ I F G +F +F L+ Y + S + T+K + N ++SSFF+
Sbjct: 119 LIGIIGAFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMG 178
Query: 333 CLCSTAMVSVSLLIFIRNKLA------------VYLVFICMTITRSLLFSINAAYIFMAF 190
++V L I NKLA V+++FI + T++ +F +F+
Sbjct: 179 VAILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFP-----MFVWL 233
Query: 189 PKKYFGTIIGSVFFF------AGFINLFQQLIIQFSSKDSNPDILNYILAIICFFTFLHG 28
P Y+ I + FF G + + L + FS N +Y++ + T + G
Sbjct: 234 PSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFS---DNVSFSHYVILFLALLTIIFG 290
>sp|O75387|LAT3_HUMAN Large neutral amino acids transporter small subunit 3 (L-type amino
acid transporter 3) (Solute carrier family 43 member 1)
(Prostate cancer overexpressed gene 1 protein)
Length = 559
Score = 32.7 bits (73), Expect = 1.5
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = -3
Query: 330 LCSTAMVSVSLLIFIRNKLAVYLVFICMTITRSLLFSINAAYIFMAFPKKYFGTIIGSVF 151
L + +V + I N ++ F+ TI R S + FP +FGT+ G
Sbjct: 425 LTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSLYAAVFPSNHFGTLTGLQS 484
Query: 150 FFAGFINLFQQ 118
+ L QQ
Sbjct: 485 LISAVFALLQQ 495
>sp|P50391|NPY4R_HUMAN Neuropeptide Y receptor type 4 (NPY4-R) (Pancreatic polypeptide
receptor 1) (PP1)
Length = 375
Score = 31.6 bits (70), Expect = 3.4
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = -3
Query: 486 VFFMGSLFISPIFGILLDYYQKTIFISLSKKSNLTLKRIYNEINSSFFLPCCLCS--TAM 313
VF + S I + G+L + + + +K+N+T I N + S FL C LC TA+
Sbjct: 42 VFIVTSYSIETVVGVLGNLCLMCVTVRQKEKANVTNLLIAN-LAFSDFLMCLLCQPLTAV 100
Query: 312 VSVSLLIFIRNKLAVYLVFI-CMTITRSLL 226
++ L FI CM++T S+L
Sbjct: 101 YTIMDYWIFGETLCKMSAFIQCMSVTVSIL 130
>sp|Q89AT1|CVPA_BUCBP Colicin V production protein homolog
Length = 161
Score = 31.6 bits (70), Expect = 3.4
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Frame = -3
Query: 333 CLCSTAMVSVSLLIFIR------NKLAVYLVFICMTITRSLLFSINAAYIFMAFPKKYFG 172
C+ ++ +++ F R + + +++V +C+ FSI + Y+ F K
Sbjct: 6 CISIIVIIISAVISFFRGFLQELSSIFIWIVGVCVFFRYYSFFSIFSTYVRNIFLKNIIS 65
Query: 171 TIIGSVFFFAGFINLFQQLIIQFSSKDSNPDILNYILAIICFFTFLHGI 25
I+ VFF F ++F II F K ++N I + FF + G+
Sbjct: 66 YIVFFVFFLF-FKSIFDYCIIIFIEK-CGISLINKIFGM--FFGIIRGV 110
>sp|Q8NH70|OR4AG_HUMAN Olfactory receptor 4A16
Length = 328
Score = 31.2 bits (69), Expect = 4.5
Identities = 30/167 (17%), Positives = 70/167 (41%), Gaps = 10/167 (5%)
Frame = -3
Query: 495 ISNVFFMGSLFISPIFGILLDYYQKTIFISLSKKSNLTLKRIYNEINSSFFLPCCLCSTA 316
+ N+ + SP G L+ ++ ++SL + IY+ S + LC
Sbjct: 38 VGNLLIWVTTIGSPSLGSLMYFF--LAYLSL-------MDAIYSTAMSPKLMIDLLCDKI 88
Query: 315 MVSVSLL---IFIRNKLAVYLVFICMTITRSLLFSINAAYIFMAFPKKYFGTIIGSVFFF 145
+S+S +FI + L VF+ + + +I+ ++ + ++ V
Sbjct: 89 AISLSACMGQLFIEHLLGGAEVFLLVVMAYDRYVAISKPLHYLNIMNRLVCILLLVVAMI 148
Query: 144 AGFINLFQQLIIQFSSKDSNPDILNY-------ILAIICFFTFLHGI 25
GF++ Q++ +S P+++++ +L ++C T+ G+
Sbjct: 149 GGFVHSVVQIVFLYSLPICGPNVIDHSVCDMYPLLELLCLDTYFIGL 195
>sp|Q97X94|UPPP_SULSO Undecaprenyl-diphosphatase (Undecaprenyl pyrophosphate phosphatase)
Length = 278
Score = 31.2 bits (69), Expect = 4.5
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = -3
Query: 249 MTITRSLL-FSINAAYIFMAFPKKYFGTIIGSVFFFAGFINLFQQLIIQFSSKDSNPDIL 73
+ ++ +LL S N AY F F + GTI ++F+F I+ + +++ SS+ + +L
Sbjct: 29 LIVSSTLLGLSFNVAYSFGLFME--IGTIAAAIFYFRSEISGLLKALVRMSSRREDYLLL 86
Query: 72 NYILAIICFFTFLHGI 25
+ L I+ T L G+
Sbjct: 87 KF-LVIVTIITGLVGV 101
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,562,994
Number of Sequences: 369166
Number of extensions: 1769177
Number of successful extensions: 5366
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5361
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 9856975370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)