Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02478
(860 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O77819|ROCK1_RABIT Rho-associated protein kinase 1 (Rho-... 73 1e-12
sp|Q28021|ROCK2_BOVIN Rho-associated protein kinase 2 (Rho-... 69 1e-11
sp|O75116|ROCK2_HUMAN Rho-associated protein kinase 2 (Rho-... 69 2e-11
sp|Q62868|ROCK2_RAT Rho-associated protein kinase 2 (Rho-as... 68 3e-11
sp|P70335|ROCK1_MOUSE Rho-associated protein kinase 1 (Rho-... 68 4e-11
sp|P70336|ROCK2_MOUSE Rho-associated protein kinase 2 (Rho-... 67 5e-11
sp|Q13464|ROCK1_HUMAN Rho-associated protein kinase 1 (Rho-... 67 6e-11
sp|P61584|ROCK1_PANTR Rho-associated protein kinase 1 (Rho-... 67 6e-11
sp|Q63644|ROCK1_RAT Rho-associated protein kinase 1 (Rho-as... 59 1e-08
sp|Q9VJE5|CL190_DROME Restin homolog (Cytoplasmic linker pr... 37 0.071
>sp|O77819|ROCK1_RABIT Rho-associated protein kinase 1 (Rho-associated, coiled-coil
containing protein kinase 1) (p160 ROCK-1) (p160ROCK)
(cAMP dependent protein kinase ROCK-I) (CePKA) (Corneal
epithelial Rho-associated-Ser/Thr kinase 1) (HEBM1)
Length = 1354
Score = 72.8 bits (177), Expect = 1e-12
Identities = 62/295 (21%), Positives = 124/295 (42%), Gaps = 21/295 (7%)
Frame = +3
Query: 3 KFQEKV----KECNEIRNDCKDWQDKYKDLKAELDNQNNIIKGLRADLNNRG-------- 146
KF + V KE N+++ + +L+ +L ++ + I+ LRA L++
Sbjct: 1047 KFNQMVVKHQKELNDMQAQLVEECTHRNELQMQLASKESDIEQLRAKLSDLSDSTSVASF 1106
Query: 147 -TRNELTPNLELKSLEGKLEILKKSKGRHKIHWIPYYGNLKPFKLDIYQNEND---NIPF 314
+ +E PNL +EG L + + + + W Y + K+ Y +E D + P
Sbjct: 1107 PSADETDPNLPESRIEGWLSVPNRGNIK-RYGWKKQYVVVSSKKILFYNDEQDKEQSNPS 1165
Query: 315 ISIDLRSVMHIREPSAAECVHIDKALLPQIIQIIYEKQDSSEDFRRQSVISVDASRRAKA 494
+ +D+ + H+R + + + +P+I QI+Y + + + V+ ++A+
Sbjct: 1166 MVLDIDKLFHVRPVTQGDVYRAETEEIPKIFQILYANEGEC-----RKDVEVEPVQQAEK 1220
Query: 495 STLLVDDANSSIRSSFIGGDPGSNGIYNIENHSFVPMRFRSYANCDLCHQSCSELLNPPL 674
+ N + H F+P + ANC+ C + + PP
Sbjct: 1221 TNF-----------------------QNHKGHEFIPTLYHFPANCEACAKPLWHVFKPPP 1257
Query: 675 SLECANCKKRIHFDHINTNEYKIQWCQGAIEV-----VLFKVESKEARNAWINCL 824
+LEC C + H DH++ E I C+ + +V +L S++ + W+ L
Sbjct: 1258 ALECRRCHVKCHRDHLDKKEDLISPCKVSYDVTSARDMLLLACSQDEQKKWVTHL 1312
>sp|Q28021|ROCK2_BOVIN Rho-associated protein kinase 2 (Rho-associated, coiled-coil
containing protein kinase 2) (p164 ROCK-2)
Length = 1388
Score = 69.3 bits (168), Expect = 1e-11
Identities = 62/288 (21%), Positives = 115/288 (39%), Gaps = 20/288 (6%)
Frame = +3
Query: 21 KECNEIRNDCKDWQDKYKDLKAELDNQNNIIKGLRADLN------------NRGTRNELT 164
KE NE++ + +L+ LD++++ I+ LR+ L + E
Sbjct: 1086 KELNEMQAQIAEESQIRIELQMTLDSKDSDIEQLRSQLQALHIGLDSSSIGSGPGDTEAD 1145
Query: 165 PNLELKSLEGKLEILKKSKGRHKIHWIPYYGNLKPFKLDIYQNEND---NIPFISIDLRS 335
LEG L + ++ + K W+ Y + K+ Y +E D + P++ +D+
Sbjct: 1146 DGFPESRLEGWLSLPVRNNTK-KFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDK 1204
Query: 336 VMHIREPSAAECVHIDKALLPQIIQIIYEKQDSSEDFRRQSVISVDASRRAKASTLLVDD 515
+ H+R + + D +P+I QI+Y + S+ + V V
Sbjct: 1205 LFHVRPVTQTDVYRADAKEIPRIFQILYANEGESKKEQEFPVEPVGEK------------ 1252
Query: 516 ANSSIRSSFIGGDPGSNGIYNIENHSFVPMRFRSYANCDLCHQSCSELLNPPLSLECANC 695
SN I + + H F+P + NC+ C + + PP +LEC C
Sbjct: 1253 ---------------SNYICH-KGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRC 1296
Query: 696 KKRIHFDHINTNEYKIQWCQGAIEV-----VLFKVESKEARNAWINCL 824
+ H DH++ E I C+ ++ +L S E + W++ L
Sbjct: 1297 HIKCHKDHMDKKEEIIAPCKVYYDISSAKNLLLLANSTEEQQKWVSRL 1344
>sp|O75116|ROCK2_HUMAN Rho-associated protein kinase 2 (Rho-associated, coiled-coil
containing protein kinase 2) (p164 ROCK-2) (Rho kinase 2)
Length = 1388
Score = 68.9 bits (167), Expect = 2e-11
Identities = 63/288 (21%), Positives = 116/288 (40%), Gaps = 20/288 (6%)
Frame = +3
Query: 21 KECNEIRNDCKDWQDKYKDLKAELDNQNNIIKGLRADLN-----------NRGTRN-ELT 164
KE NE++ + +L+ LD++++ I+ LR+ L G + E
Sbjct: 1086 KELNEMQAQIAEESQIRIELQMTLDSKDSDIEQLRSQLQALHIGLDSSSIGSGPGDAEAD 1145
Query: 165 PNLELKSLEGKLEILKKSKGRHKIHWIPYYGNLKPFKLDIYQNEND---NIPFISIDLRS 335
LEG L + ++ + K W+ Y + K+ Y +E D + P++ +D+
Sbjct: 1146 DGFPESRLEGWLSLPVRNNTK-KFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDK 1204
Query: 336 VMHIREPSAAECVHIDKALLPQIIQIIYEKQDSSEDFRRQSVISVDASRRAKASTLLVDD 515
+ H+R + + D +P+I QI+Y + S+ + V V
Sbjct: 1205 LFHVRPVTQTDVYRADAKEIPRIFQILYANEGESKKEQEFPVEPVGEK------------ 1252
Query: 516 ANSSIRSSFIGGDPGSNGIYNIENHSFVPMRFRSYANCDLCHQSCSELLNPPLSLECANC 695
SN I + + H F+P + NC+ C + + PP +LEC C
Sbjct: 1253 ---------------SNYICH-KGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRC 1296
Query: 696 KKRIHFDHINTNEYKIQWCQGAIEV-----VLFKVESKEARNAWINCL 824
+ H DH++ E I C+ ++ +L S E + W++ L
Sbjct: 1297 HIKCHKDHMDKKEEIIAPCKVYYDISTAKNLLLLANSTEEQQKWVSRL 1344
>sp|Q62868|ROCK2_RAT Rho-associated protein kinase 2 (Rho-associated, coiled-coil
containing protein kinase 2) (p164 ROCK-2) (RhoA-binding
kinase 2) (p150 ROK-alpha) (ROKalpha)
Length = 1379
Score = 68.2 bits (165), Expect = 3e-11
Identities = 63/288 (21%), Positives = 117/288 (40%), Gaps = 20/288 (6%)
Frame = +3
Query: 21 KECNEIRNDCKDWQDKYKDLKAELDNQNNIIKGLRADLN-----------NRGTRN-ELT 164
KE NE++ + +L+ LD++++ I+ LR+ L G + E
Sbjct: 1077 KELNEMQAQIAEESQIRIELQMTLDSKDSDIEQLRSQLQALHIGMDSSSIGSGPGDAEPD 1136
Query: 165 PNLELKSLEGKLEILKKSKGRHKIHWIPYYGNLKPFKLDIYQNEND---NIPFISIDLRS 335
LEG L + ++ + K W+ Y + K+ Y +E D + P++ +D+
Sbjct: 1137 DGFPESRLEGWLSLPVRNNTK-KFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDK 1195
Query: 336 VMHIREPSAAECVHIDKALLPQIIQIIYEKQDSSEDFRRQSVISVDASRRAKASTLLVDD 515
+ H+R + + D +P+I QI+Y + S+ K V+
Sbjct: 1196 LFHVRPVTQTDVYRADAKEIPRIFQILYANEGESK----------------KEPEFPVEP 1239
Query: 516 ANSSIRSSFIGGDPGSNGIYNIENHSFVPMRFRSYANCDLCHQSCSELLNPPLSLECANC 695
SN I + + H F+P + NC+ C + + PP +LEC+ C
Sbjct: 1240 VGEK-----------SNYICH-KGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECSRC 1287
Query: 696 KKRIHFDHINTNEYKIQWCQGAIEV-----VLFKVESKEARNAWINCL 824
+ H DH++ E I C+ ++ +L S E + W++ L
Sbjct: 1288 HIKCHKDHMDKKEEIIAPCKVYYDISSAKNLLLLANSTEEQQKWVSRL 1335
Score = 31.2 bits (69), Expect = 3.9
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +3
Query: 9 QEKVKECNEIRNDCKDWQDKYKDLKAELDNQNNIIKGLRADLNN--RGTRNELTPNLELK 182
+EK K C E++ +D QD+ L A+L+ I +AD R E +LE +
Sbjct: 879 EEKTKLCKELQQKKQDLQDERDSLAAQLE-----ITLTKADSEQLARSIAEEQYSDLEKE 933
Query: 183 SLEGKLEILKKSKGRHK 233
+ +LEI K+ RHK
Sbjct: 934 KIMKELEI-KEMMARHK 949
>sp|P70335|ROCK1_MOUSE Rho-associated protein kinase 1 (Rho-associated, coiled-coil
containing protein kinase 1) (p160 ROCK-1) (p160ROCK)
Length = 1354
Score = 67.8 bits (164), Expect = 4e-11
Identities = 61/295 (20%), Positives = 120/295 (40%), Gaps = 21/295 (7%)
Frame = +3
Query: 3 KFQEKV----KECNEIRNDCKDWQDKYKDLKAELDNQNNIIKGLRADLNNRG-------- 146
KF + V KE N+++ + +L+ +L ++ + I+ LRA L +
Sbjct: 1047 KFNQMVVKHQKELNDMQAQLVEECTHRNELQMQLASKESDIEQLRAKLLDLSDSTSVASF 1106
Query: 147 -TRNELTPNLELKSLEGKLEILKKSKGRHKIHWIPYYGNLKPFKLDIYQNEND---NIPF 314
+ +E NL +EG L + + + + W Y + K+ Y +E D + P
Sbjct: 1107 PSADETDGNLPESRIEGWLSVPNRGNIK-RYGWKKQYVVVSSKKILFYNDEQDKEQSSPS 1165
Query: 315 ISIDLRSVMHIREPSAAECVHIDKALLPQIIQIIYEKQDSSEDFRRQSVISVDASRRAKA 494
+ +D+ + H+R + + + +P+I QI+Y +
Sbjct: 1166 MVLDIDKLFHVRPVTQGDVYRAETEEIPKIFQILYANEGECR------------------ 1207
Query: 495 STLLVDDANSSIRSSFIGGDPGSNGIYNIENHSFVPMRFRSYANCDLCHQSCSELLNPPL 674
+ V+ +++F N + H F+P + ANC+ C + + PP
Sbjct: 1208 KDIEVEPVQQGEKTNF----------QNHKGHEFIPTLYHFPANCEACAKPLWHVFKPPP 1257
Query: 675 SLECANCKKRIHFDHINTNEYKIQWCQGAIEV-----VLFKVESKEARNAWINCL 824
+LEC C + H DH++ E I C+ + +V +L S++ + W+ L
Sbjct: 1258 ALECRRCHVKCHRDHLDKKEDLISPCKVSYDVTSARDMLLLACSQDEQKKWVTHL 1312
>sp|P70336|ROCK2_MOUSE Rho-associated protein kinase 2 (Rho-associated, coiled-coil
containing protein kinase 2) (p164 ROCK-2)
Length = 1388
Score = 67.4 bits (163), Expect = 5e-11
Identities = 63/288 (21%), Positives = 116/288 (40%), Gaps = 20/288 (6%)
Frame = +3
Query: 21 KECNEIRNDCKDWQDKYKDLKAELDNQNNIIKGLRADLN-----------NRGTRN-ELT 164
KE NE++ + +L+ LD++++ I+ LR+ L G + E
Sbjct: 1086 KELNEMQAQIAEESQIRIELQMTLDSKDSDIEQLRSQLQALHIGMDSSSIGSGPGDAEPD 1145
Query: 165 PNLELKSLEGKLEILKKSKGRHKIHWIPYYGNLKPFKLDIYQNEND---NIPFISIDLRS 335
LEG L + ++ + K W+ Y + K+ Y +E D + P++ +D+
Sbjct: 1146 DGFPESRLEGWLSLPVRNNTK-KFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDK 1204
Query: 336 VMHIREPSAAECVHIDKALLPQIIQIIYEKQDSSEDFRRQSVISVDASRRAKASTLLVDD 515
+ H+R + + D +P+I QI+Y + S+ K V+
Sbjct: 1205 LFHVRPVTQTDVYRADAKEIPRIFQILYANEGESK----------------KEPEFPVEP 1248
Query: 516 ANSSIRSSFIGGDPGSNGIYNIENHSFVPMRFRSYANCDLCHQSCSELLNPPLSLECANC 695
SN I + + H F+P + NC+ C + + PP +LEC C
Sbjct: 1249 VGEK-----------SNYICH-KGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRC 1296
Query: 696 KKRIHFDHINTNEYKIQWCQGAIEV-----VLFKVESKEARNAWINCL 824
+ H DH++ E I C+ ++ +L S E + W++ L
Sbjct: 1297 HIKCHKDHMDKKEEIIAPCKVYYDISSAKNLLLLANSTEEQQKWVSRL 1344
Score = 31.2 bits (69), Expect = 3.9
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +3
Query: 9 QEKVKECNEIRNDCKDWQDKYKDLKAELDNQNNIIKGLRADLNN--RGTRNELTPNLELK 182
+EK K C E++ +D QD+ L A+L+ I +AD R E +LE +
Sbjct: 888 EEKTKLCKELQQKKQDLQDERDSLAAQLE-----ITLTKADSEQLARSIAEEQYSDLEKE 942
Query: 183 SLEGKLEILKKSKGRHK 233
+ +LEI K+ RHK
Sbjct: 943 KIMKELEI-KEMMARHK 958
>sp|Q13464|ROCK1_HUMAN Rho-associated protein kinase 1 (Rho-associated, coiled-coil
containing protein kinase 1) (p160 ROCK-1) (p160ROCK)
Length = 1354
Score = 67.0 bits (162), Expect = 6e-11
Identities = 62/296 (20%), Positives = 120/296 (40%), Gaps = 22/296 (7%)
Frame = +3
Query: 3 KFQEKV----KECNEIRNDCKDWQDKYKDLKAELDNQNNIIKGLRADLNNRG-------- 146
KF + V KE N+++ + +L+ +L ++ + I+ LRA L +
Sbjct: 1047 KFNQMVVKHQKELNDMQAQLVEECAHRNELQMQLASKESDIEQLRAKLLDLSDSTSVASF 1106
Query: 147 -TRNELTPNLELKSLEGKLEILKKSKGRHKIHWIPYYGNLKPFKLDIYQNEND---NIPF 314
+ +E NL +EG L + + + + W Y + K+ Y +E D + P
Sbjct: 1107 PSADETDGNLPESRIEGWLSVPNRGNIK-RYGWKKQYVVVSSKKILFYNDEQDKEQSNPS 1165
Query: 315 ISIDLRSVMHIREPSAAECVHIDKALLPQIIQIIYEKQ-DSSEDFRRQSVISVDASRRAK 491
+ +D+ + H+R + + + +P+I QI+Y + + +D + V + +
Sbjct: 1166 MVLDIDKLFHVRPVTQGDVYRAETEEIPKIFQILYANEGECRKDVEMEPVQQAEKTN--- 1222
Query: 492 ASTLLVDDANSSIRSSFIGGDPGSNGIYNIENHSFVPMRFRSYANCDLCHQSCSELLNPP 671
N + H F+P + ANCD C + + PP
Sbjct: 1223 --------------------------FQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPP 1256
Query: 672 LSLECANCKKRIHFDHINTNEYKIQWCQGAIEV-----VLFKVESKEARNAWINCL 824
+LEC C + H DH++ E I C+ + +V +L S++ + W+ L
Sbjct: 1257 PALECRRCHVKCHRDHLDKKEDLICPCKVSYDVTSARDMLLLACSQDEQKKWVTHL 1312
>sp|P61584|ROCK1_PANTR Rho-associated protein kinase 1 (Rho-associated, coiled-coil
containing protein kinase 1) (p160 ROCK-1) (p160ROCK)
Length = 1003
Score = 67.0 bits (162), Expect = 6e-11
Identities = 62/296 (20%), Positives = 120/296 (40%), Gaps = 22/296 (7%)
Frame = +3
Query: 3 KFQEKV----KECNEIRNDCKDWQDKYKDLKAELDNQNNIIKGLRADLNNRG-------- 146
KF + V KE N+++ + +L+ +L ++ + I+ LRA L +
Sbjct: 696 KFNQMVVKHQKELNDMQAQLVEECAHRNELQMQLASKESDIEQLRAKLLDLSDSTSVASF 755
Query: 147 -TRNELTPNLELKSLEGKLEILKKSKGRHKIHWIPYYGNLKPFKLDIYQNEND---NIPF 314
+ +E NL +EG L + + + + W Y + K+ Y +E D + P
Sbjct: 756 PSADETDGNLPESRIEGWLSVPNRGNIK-RYGWKKQYVVVSSKKILFYNDEQDKEQSNPS 814
Query: 315 ISIDLRSVMHIREPSAAECVHIDKALLPQIIQIIYEKQ-DSSEDFRRQSVISVDASRRAK 491
+ +D+ + H+R + + + +P+I QI+Y + + +D + V + +
Sbjct: 815 MVLDIDKLFHVRPVTQGDVYRAETEEIPKIFQILYANEGECRKDVEMEPVQQAEKTN--- 871
Query: 492 ASTLLVDDANSSIRSSFIGGDPGSNGIYNIENHSFVPMRFRSYANCDLCHQSCSELLNPP 671
N + H F+P + ANCD C + + PP
Sbjct: 872 --------------------------FQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPP 905
Query: 672 LSLECANCKKRIHFDHINTNEYKIQWCQGAIEV-----VLFKVESKEARNAWINCL 824
+LEC C + H DH++ E I C+ + +V +L S++ + W+ L
Sbjct: 906 PALECRRCHVKCHRDHLDKKEDLICPCKVSYDVTSARDMLLLACSQDEQKKWVTHL 961
>sp|Q63644|ROCK1_RAT Rho-associated protein kinase 1 (Rho-associated, coiled-coil
containing protein kinase 1) (p160 ROCK-1) (p160ROCK)
(p150 RhoA-binding kinase ROK beta) (Liver
regeneration-related protein LRRG199)
Length = 1369
Score = 59.3 bits (142), Expect = 1e-08
Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 30/286 (10%)
Frame = +3
Query: 3 KFQEKV----KECNEIRNDCKDWQDKYKDLKAELDNQNNIIKGLRADLNNRGTRNELTPN 170
KF + V KE N+++ + +L+ +L ++ + I+ LRA L + +
Sbjct: 1047 KFNQMVVKHQKELNDMQAQLVEECTHRNELQMQLASKESDIEQLRAKLLDLSDSTSVASF 1106
Query: 171 LELKSLEGKLEI---------LKKSKGRHKIHW--IPYYGNLKPF------------KLD 281
+G L + + S W +P GN+K + K+
Sbjct: 1107 PSADETDGNLPVGSACIPYLFIFYSSSSRIEGWLSVPNRGNIKRYGWKKQYVVVSSKKML 1166
Query: 282 IYQNEND---NIPFISIDLRSVMHIREPSAAECVHIDKALLPQIIQIIYEKQDSSEDFRR 452
Y +E D + P + +D+ + H+R + + + +P+I QI+Y +
Sbjct: 1167 FYNDEQDKEQSSPSMVLDIDKLFHVRPVTQGDVYRAETEEIPKIFQILYANEGECR---- 1222
Query: 453 QSVISVDASRRAKASTLLVDDANSSIRSSFIGGDPGSNGIYNIENHSFVPMRFRSYANCD 632
+ V+ +++F N + H F+P + ANC+
Sbjct: 1223 --------------KDIEVEPVQQGEKTNF----------QNHKGHEFIPTLYHFPANCE 1258
Query: 633 LCHQSCSELLNPPLSLECANCKKRIHFDHINTNEYKIQWCQGAIEV 770
C + + PP +LEC C + H DH++ E I C+ + +V
Sbjct: 1259 ACAKPLWHVFKPPPALECRRCHVKSHRDHLDKKEDLIPPCKVSYDV 1304
>sp|Q9VJE5|CL190_DROME Restin homolog (Cytoplasmic linker protein 190) (Microtubule binding
protein 190) (d-CLIP-190)
Length = 1690
Score = 37.0 bits (84), Expect = 0.071
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Frame = +3
Query: 12 EKVKECNEIRNDCKDWQDKYKDLKAELDNQ----NNIIKGLRADLNNRGTRN-ELTPNLE 176
+K KE E+R +D QD LKAE + + IK L+ ++ T N EL+ +
Sbjct: 1020 QKEKELQELRQQLQDSQDSQTKLKAEGERKEKSFEESIKNLQEEVTKAKTENLELSTGTQ 1079
Query: 177 --LKSLEGKLEILK---KSKGRHKIHWIPYYGNLKPFKLDIYQNENDNIPFISIDLRSVM 341
+K L+ +LEI + K + +LK ++ Q N NI + +L +V+
Sbjct: 1080 TTIKDLQERLEITNAELQHKEKMASEDAQKIADLKTL-VEAIQVANANISATNAELSTVL 1138
Query: 342 HIREPSAAECVHI 380
+ + +E HI
Sbjct: 1139 EVLQAEKSETNHI 1151
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,231,143
Number of Sequences: 369166
Number of extensions: 1782044
Number of successful extensions: 5843
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5836
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)