Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02470
(522 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27752|V1A_CCMV 1A protein [Includes: Helicase; Methyltr... 31 1.6
sp|Q12955|ANK3_HUMAN Ankyrin-3 (ANK-3) (Ankyrin G) 30 2.7
sp|P10996|NIFE_CLOPA Nitrogenase iron-molybdenum cofactor b... 30 3.5
sp|Q9W6A8|OP1S2_BRARE Opsin 1, short-wave-sensitive 2 (Blue... 30 3.5
sp|P32310|OPSB_CARAU Blue-sensitive opsin (Blue cone photor... 29 7.8
>sp|P27752|V1A_CCMV 1A protein [Includes: Helicase; Methyltransferase]
Length = 958
Score = 31.2 bits (69), Expect = 1.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 79 KFDGELYLFFKYCICENVPMYETNQSALRS 168
KFD ELY+ K CIC N + N +L++
Sbjct: 643 KFDDELYVVDKSCICANYQVLSKNTDSLKA 672
>sp|Q12955|ANK3_HUMAN Ankyrin-3 (ANK-3) (Ankyrin G)
Length = 4377
Score = 30.4 bits (67), Expect = 2.7
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 238 SQSGITEGVIKLKHFNDVETGSDEDETVCYENAAKLKQHE 357
SQS +++ ++ +HFN + EDE V Y +K+ +H+
Sbjct: 2995 SQSSMSKETVETQHFNSI-----EDEKVTYSEISKVSKHQ 3029
>sp|P10996|NIFE_CLOPA Nitrogenase iron-molybdenum cofactor biosynthesis protein nifE
Length = 456
Score = 30.0 bits (66), Expect = 3.5
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 522 QRSNTIYYHKRWIDGFC*SQFRCMYHPVTS--ANASIDWCGCKMI 394
QR +IYY+K+ DG C F+C V+ + + +CG +++
Sbjct: 18 QREESIYYNKKSEDGGCGGDFKCDTASVSGSVSQRACVYCGARVV 62
>sp|Q9W6A8|OP1S2_BRARE Opsin 1, short-wave-sensitive 2 (Blue-sensitive opsin) (Blue cone
photoreceptor pigment) (Opsin SWS-2)
Length = 354
Score = 30.0 bits (66), Expect = 3.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 64 FTVYNKFDGELYLFFKYCICENVP 135
+T NKF+ E Y+ F +C C VP
Sbjct: 199 YTTNNKFNNESYVMFLFCFCFAVP 222
>sp|P32310|OPSB_CARAU Blue-sensitive opsin (Blue cone photoreceptor pigment)
Length = 351
Score = 28.9 bits (63), Expect = 7.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 64 FTVYNKFDGELYLFFKYCICENVP 135
+T NK++ E Y+ F +C C VP
Sbjct: 196 YTTNNKYNNESYVMFLFCFCFAVP 219
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,806,200
Number of Sequences: 369166
Number of extensions: 992811
Number of successful extensions: 1879
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)