Planaria EST Database


DrC_02470

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02470
         (522 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27752|V1A_CCMV  1A protein [Includes: Helicase; Methyltr...    31   1.6  
sp|Q12955|ANK3_HUMAN  Ankyrin-3 (ANK-3) (Ankyrin G)                30   2.7  
sp|P10996|NIFE_CLOPA  Nitrogenase iron-molybdenum cofactor b...    30   3.5  
sp|Q9W6A8|OP1S2_BRARE  Opsin 1, short-wave-sensitive 2 (Blue...    30   3.5  
sp|P32310|OPSB_CARAU  Blue-sensitive opsin (Blue cone photor...    29   7.8  
>sp|P27752|V1A_CCMV 1A protein [Includes: Helicase; Methyltransferase]
          Length = 958

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 79  KFDGELYLFFKYCICENVPMYETNQSALRS 168
           KFD ELY+  K CIC N  +   N  +L++
Sbjct: 643 KFDDELYVVDKSCICANYQVLSKNTDSLKA 672
>sp|Q12955|ANK3_HUMAN Ankyrin-3 (ANK-3) (Ankyrin G)
          Length = 4377

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 238  SQSGITEGVIKLKHFNDVETGSDEDETVCYENAAKLKQHE 357
            SQS +++  ++ +HFN +     EDE V Y   +K+ +H+
Sbjct: 2995 SQSSMSKETVETQHFNSI-----EDEKVTYSEISKVSKHQ 3029
>sp|P10996|NIFE_CLOPA Nitrogenase iron-molybdenum cofactor biosynthesis protein nifE
          Length = 456

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 522 QRSNTIYYHKRWIDGFC*SQFRCMYHPVTS--ANASIDWCGCKMI 394
           QR  +IYY+K+  DG C   F+C    V+   +  +  +CG +++
Sbjct: 18  QREESIYYNKKSEDGGCGGDFKCDTASVSGSVSQRACVYCGARVV 62
>sp|Q9W6A8|OP1S2_BRARE Opsin 1, short-wave-sensitive 2 (Blue-sensitive opsin) (Blue cone
           photoreceptor pigment) (Opsin SWS-2)
          Length = 354

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 64  FTVYNKFDGELYLFFKYCICENVP 135
           +T  NKF+ E Y+ F +C C  VP
Sbjct: 199 YTTNNKFNNESYVMFLFCFCFAVP 222
>sp|P32310|OPSB_CARAU Blue-sensitive opsin (Blue cone photoreceptor pigment)
          Length = 351

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 64  FTVYNKFDGELYLFFKYCICENVP 135
           +T  NK++ E Y+ F +C C  VP
Sbjct: 196 YTTNNKYNNESYVMFLFCFCFAVP 219
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,806,200
Number of Sequences: 369166
Number of extensions: 992811
Number of successful extensions: 1879
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)