Planaria EST Database


DrC_02463

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02463
         (866 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8C726|BTBD9_MOUSE  BTB/POZ domain containing protein 9        277   3e-74
sp|Q96Q07|BTBD9_HUMAN  BTB/POZ domain containing protein 9        275   2e-73
sp|Q9Y5S1|TRPV2_HUMAN  Transient receptor potential cation c...    31   5.1  
sp|P40071|YEU3_YEAST  Hypothetical 81.5 kDa protein in USS1-...    31   5.1  
sp|Q92PW3|LEXA_RHIME  LexA repressor                               30   8.7  
sp|P61605|LEXA_AGRTU  LexA repressor                               30   8.7  
>sp|Q8C726|BTBD9_MOUSE BTB/POZ domain containing protein 9
          Length = 612

 Score =  277 bits (708), Expect = 3e-74
 Identities = 139/260 (53%), Positives = 176/260 (67%), Gaps = 2/260 (0%)
 Frame = +3

Query: 87   FGEHLIEEQGR--ILIRLGNPSKINLIRMYLLDREGRSYSYIVDVSLDQTSWITVTDYRR 260
            F  H I++  R  I I+LG PS IN IR+ L DR+ RSYSY ++VS+D+  WI V D+  
Sbjct: 309  FSRHPIDDDCRSGIEIKLGQPSIINHIRLLLWDRDSRSYSYFIEVSMDELDWIRVIDHSH 368

Query: 261  YICRSWQTLYFDPIVVQYXXXXXXXXXXXXXXXXLEFECLYTDSVRQHIDNIQVPNYNVA 440
            Y+CRSWQ LYF   V +Y                + FEC++T+        + VP  NVA
Sbjct: 369  YLCRSWQKLYFPARVCRYIRIVGTHNTVNKIFHIVAFECMFTNKAFTLEKGLIVPLENVA 428

Query: 441  SIEHYATVIEGVSRSRNSLLNGETKNYNWDSGYTCHQLGNGAIVVQLAQPYIVNFIRFLL 620
            +I   A+VIEGVSRSRN+LLNG+TKNY+WDSGYTCHQLG+GAIVVQLAQPYI+  IR LL
Sbjct: 429  TIADCASVIEGVSRSRNALLNGDTKNYDWDSGYTCHQLGSGAIVVQLAQPYIIGSIRLLL 488

Query: 621  WDLDDRSYSYTVEVSSDRSKWTMVADKSAELCSSYQNLYFSSQSIVFIRIIGTYNSANEV 800
            WD DDRSYSY VEVS+++ +WTMVAD++   C S+Q++ F  Q   FIRI+GT+N+ANEV
Sbjct: 489  WDCDDRSYSYYVEVSTNQQQWTMVADRTKVSCKSWQSVTFERQPASFIRIVGTHNTANEV 548

Query: 801  FHIVHLETYHQQIETSSDET 860
            FH VH E   QQ     D +
Sbjct: 549  FHCVHFECPEQQSNQKEDSS 568

 Score =  124 bits (311), Expect = 3e-28
 Identities = 61/137 (44%), Positives = 92/137 (67%), Gaps = 3/137 (2%)
 Frame = +3

Query: 420 VPNYNVASIEHYATVIEGVSRSRNSLLNGETKNYNWDSGYTCHQLGN---GAIVVQLAQP 590
           +P  N+A++++ A V++G  +S  +LL+G+T+NY+ D G++ H + +     I ++L QP
Sbjct: 272 IPEENIATMKYGAQVVKGELKS--ALLDGDTQNYDLDHGFSRHPIDDDCRSGIEIKLGQP 329

Query: 591 YIVNFIRFLLWDLDDRSYSYTVEVSSDRSKWTMVADKSAELCSSYQNLYFSSQSIVFIRI 770
            I+N IR LLWD D RSYSY +EVS D   W  V D S  LC S+Q LYF ++   +IRI
Sbjct: 330 SIINHIRLLLWDRDSRSYSYFIEVSMDELDWIRVIDHSHYLCRSWQKLYFPARVCRYIRI 389

Query: 771 IGTYNSANEVFHIVHLE 821
           +GT+N+ N++FHIV  E
Sbjct: 390 VGTHNTVNKIFHIVAFE 406
>sp|Q96Q07|BTBD9_HUMAN BTB/POZ domain containing protein 9
          Length = 612

 Score =  275 bits (702), Expect = 2e-73
 Identities = 139/263 (52%), Positives = 181/263 (68%), Gaps = 5/263 (1%)
 Frame = +3

Query: 87   FGEHLIEEQGR--ILIRLGNPSKINLIRMYLLDREGRSYSYIVDVSLDQTSWITVTDYRR 260
            F  H I++  R  I I+LG PS IN IR+ L DR+ RSYSY ++VS+D+  W+ V D+ +
Sbjct: 309  FSRHPIDDDCRSGIEIKLGQPSIINHIRILLWDRDSRSYSYFIEVSMDELDWVRVIDHSQ 368

Query: 261  YICRSWQTLYFDPIVVQYXXXXXXXXXXXXXXXXLEFECLYTDSVRQHIDNIQVPNYNVA 440
            Y+CRSWQ LYF   V +Y                + FEC++T+        + VP  NVA
Sbjct: 369  YLCRSWQKLYFPARVCRYIRIVGTHNTVNKIFHIVAFECMFTNKTFTLEKGLIVPMENVA 428

Query: 441  SIEHYATVIEGVSRSRNSLLNGETKNYNWDSGYTCHQLGNGAIVVQLAQPYIVNFIRFLL 620
            +I   A+VIEGVSRSRN+LLNG+TKNY+WDSGYTCHQLG+GAIVVQLAQPY++  IR LL
Sbjct: 429  TIADCASVIEGVSRSRNALLNGDTKNYDWDSGYTCHQLGSGAIVVQLAQPYMIGSIRLLL 488

Query: 621  WDLDDRSYSYTVEVSSDRSKWTMVADKSAELCSSYQNLYFSSQSIVFIRIIGTYNSANEV 800
            WD DDRSYSY VEVS+++ +WTMVAD++   C S+Q++ F  Q   FIRI+GT+N+ANEV
Sbjct: 489  WDCDDRSYSYYVEVSTNQQQWTMVADRTKVSCKSWQSVTFERQPASFIRIVGTHNTANEV 548

Query: 801  FHIVHLETYHQQI---ETSSDET 860
            FH VH E   QQ    E +S+E+
Sbjct: 549  FHCVHFECPEQQSSQKEENSEES 571

 Score =  125 bits (313), Expect = 2e-28
 Identities = 61/137 (44%), Positives = 92/137 (67%), Gaps = 3/137 (2%)
 Frame = +3

Query: 420 VPNYNVASIEHYATVIEGVSRSRNSLLNGETKNYNWDSGYTCHQLGN---GAIVVQLAQP 590
           +P  N+A++++ A V++G  +S  +LL+G+T+NY+ D G++ H + +     I ++L QP
Sbjct: 272 IPEENIATMKYGAQVVKGELKS--ALLDGDTQNYDLDHGFSRHPIDDDCRSGIEIKLGQP 329

Query: 591 YIVNFIRFLLWDLDDRSYSYTVEVSSDRSKWTMVADKSAELCSSYQNLYFSSQSIVFIRI 770
            I+N IR LLWD D RSYSY +EVS D   W  V D S  LC S+Q LYF ++   +IRI
Sbjct: 330 SIINHIRILLWDRDSRSYSYFIEVSMDELDWVRVIDHSQYLCRSWQKLYFPARVCRYIRI 389

Query: 771 IGTYNSANEVFHIVHLE 821
           +GT+N+ N++FHIV  E
Sbjct: 390 VGTHNTVNKIFHIVAFE 406
>sp|Q9Y5S1|TRPV2_HUMAN Transient receptor potential cation channel subfamily V member 2
           (TrpV2) (osm-9-like TRP channel 2) (OTRPC2) (Vanilloid
           receptor-like protein 1) (VRL-1)
          Length = 764

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
 Frame = +1

Query: 385 LIVFVSTSTIYRFPTTMWPQSSIMLL*LKVSVDHEIPC*MARRKIITGIRVTLV--INWV 558
           + +F+ T+  Y  PT            LK      +   +    ++TG  + L+  I  +
Sbjct: 400 IYMFIFTAVAYHQPT------------LKKQAAPHLKAEVGNSMLLTGHILILLGGIYLL 447

Query: 559 TGQLWYSWLNHIL--LTLFDFYFGI 627
            GQLWY W  H+   ++  D YF I
Sbjct: 448 VGQLWYFWRRHVFIWISFIDSYFEI 472
>sp|P40071|YEU3_YEAST Hypothetical 81.5 kDa protein in USS1-BEB1 intergenic region
           precursor
          Length = 706

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
 Frame = +3

Query: 57  PEHIDPSETIFGEHLIEEQGRILIRLGNPSKINLIR------MYLLD---REGRSYSYIV 209
           P H+  +E I G+   E   ++     NP +    R      M  LD   REG    +++
Sbjct: 96  PLHLSLNEIIRGDRKWESDYKLKFGEDNPCETLCARKTTKEGMQTLDKLVREGYVVQWLI 155

Query: 210 DVSLDQ-TSWITVTDYRRYICRSWQTLYFDP 299
           D  L   T++I+ TD+++Y    +   + DP
Sbjct: 156 DDELPAATTFISTTDHKKYYASGFPLGFIDP 186
>sp|Q92PW3|LEXA_RHIME LexA repressor
          Length = 238

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 390 SVRQHIDNIQVPNYNVASIEHYATVIEGVSRSRNSLLNGET 512
           +++ ++ +I VP   + S EHYA  I+G S     +L+G+T
Sbjct: 129 AIQNNMHDISVPVEMIGSGEHYALEIKGDSMIEAGILDGDT 169
>sp|P61605|LEXA_AGRTU LexA repressor
          Length = 239

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 390 SVRQHIDNIQVPNYNVASIEHYATVIEGVSRSRNSLLNGET 512
           +++ ++ +I VP   + S EHYA  I+G S     +L+G+T
Sbjct: 130 AIQNNMHDISVPVEMIGSGEHYALEIKGDSMIEAGILDGDT 170
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,706,250
Number of Sequences: 369166
Number of extensions: 2166973
Number of successful extensions: 5765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5757
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)