Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02463
(866 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8C726|BTBD9_MOUSE BTB/POZ domain containing protein 9 277 3e-74
sp|Q96Q07|BTBD9_HUMAN BTB/POZ domain containing protein 9 275 2e-73
sp|Q9Y5S1|TRPV2_HUMAN Transient receptor potential cation c... 31 5.1
sp|P40071|YEU3_YEAST Hypothetical 81.5 kDa protein in USS1-... 31 5.1
sp|Q92PW3|LEXA_RHIME LexA repressor 30 8.7
sp|P61605|LEXA_AGRTU LexA repressor 30 8.7
>sp|Q8C726|BTBD9_MOUSE BTB/POZ domain containing protein 9
Length = 612
Score = 277 bits (708), Expect = 3e-74
Identities = 139/260 (53%), Positives = 176/260 (67%), Gaps = 2/260 (0%)
Frame = +3
Query: 87 FGEHLIEEQGR--ILIRLGNPSKINLIRMYLLDREGRSYSYIVDVSLDQTSWITVTDYRR 260
F H I++ R I I+LG PS IN IR+ L DR+ RSYSY ++VS+D+ WI V D+
Sbjct: 309 FSRHPIDDDCRSGIEIKLGQPSIINHIRLLLWDRDSRSYSYFIEVSMDELDWIRVIDHSH 368
Query: 261 YICRSWQTLYFDPIVVQYXXXXXXXXXXXXXXXXLEFECLYTDSVRQHIDNIQVPNYNVA 440
Y+CRSWQ LYF V +Y + FEC++T+ + VP NVA
Sbjct: 369 YLCRSWQKLYFPARVCRYIRIVGTHNTVNKIFHIVAFECMFTNKAFTLEKGLIVPLENVA 428
Query: 441 SIEHYATVIEGVSRSRNSLLNGETKNYNWDSGYTCHQLGNGAIVVQLAQPYIVNFIRFLL 620
+I A+VIEGVSRSRN+LLNG+TKNY+WDSGYTCHQLG+GAIVVQLAQPYI+ IR LL
Sbjct: 429 TIADCASVIEGVSRSRNALLNGDTKNYDWDSGYTCHQLGSGAIVVQLAQPYIIGSIRLLL 488
Query: 621 WDLDDRSYSYTVEVSSDRSKWTMVADKSAELCSSYQNLYFSSQSIVFIRIIGTYNSANEV 800
WD DDRSYSY VEVS+++ +WTMVAD++ C S+Q++ F Q FIRI+GT+N+ANEV
Sbjct: 489 WDCDDRSYSYYVEVSTNQQQWTMVADRTKVSCKSWQSVTFERQPASFIRIVGTHNTANEV 548
Query: 801 FHIVHLETYHQQIETSSDET 860
FH VH E QQ D +
Sbjct: 549 FHCVHFECPEQQSNQKEDSS 568
Score = 124 bits (311), Expect = 3e-28
Identities = 61/137 (44%), Positives = 92/137 (67%), Gaps = 3/137 (2%)
Frame = +3
Query: 420 VPNYNVASIEHYATVIEGVSRSRNSLLNGETKNYNWDSGYTCHQLGN---GAIVVQLAQP 590
+P N+A++++ A V++G +S +LL+G+T+NY+ D G++ H + + I ++L QP
Sbjct: 272 IPEENIATMKYGAQVVKGELKS--ALLDGDTQNYDLDHGFSRHPIDDDCRSGIEIKLGQP 329
Query: 591 YIVNFIRFLLWDLDDRSYSYTVEVSSDRSKWTMVADKSAELCSSYQNLYFSSQSIVFIRI 770
I+N IR LLWD D RSYSY +EVS D W V D S LC S+Q LYF ++ +IRI
Sbjct: 330 SIINHIRLLLWDRDSRSYSYFIEVSMDELDWIRVIDHSHYLCRSWQKLYFPARVCRYIRI 389
Query: 771 IGTYNSANEVFHIVHLE 821
+GT+N+ N++FHIV E
Sbjct: 390 VGTHNTVNKIFHIVAFE 406
>sp|Q96Q07|BTBD9_HUMAN BTB/POZ domain containing protein 9
Length = 612
Score = 275 bits (702), Expect = 2e-73
Identities = 139/263 (52%), Positives = 181/263 (68%), Gaps = 5/263 (1%)
Frame = +3
Query: 87 FGEHLIEEQGR--ILIRLGNPSKINLIRMYLLDREGRSYSYIVDVSLDQTSWITVTDYRR 260
F H I++ R I I+LG PS IN IR+ L DR+ RSYSY ++VS+D+ W+ V D+ +
Sbjct: 309 FSRHPIDDDCRSGIEIKLGQPSIINHIRILLWDRDSRSYSYFIEVSMDELDWVRVIDHSQ 368
Query: 261 YICRSWQTLYFDPIVVQYXXXXXXXXXXXXXXXXLEFECLYTDSVRQHIDNIQVPNYNVA 440
Y+CRSWQ LYF V +Y + FEC++T+ + VP NVA
Sbjct: 369 YLCRSWQKLYFPARVCRYIRIVGTHNTVNKIFHIVAFECMFTNKTFTLEKGLIVPMENVA 428
Query: 441 SIEHYATVIEGVSRSRNSLLNGETKNYNWDSGYTCHQLGNGAIVVQLAQPYIVNFIRFLL 620
+I A+VIEGVSRSRN+LLNG+TKNY+WDSGYTCHQLG+GAIVVQLAQPY++ IR LL
Sbjct: 429 TIADCASVIEGVSRSRNALLNGDTKNYDWDSGYTCHQLGSGAIVVQLAQPYMIGSIRLLL 488
Query: 621 WDLDDRSYSYTVEVSSDRSKWTMVADKSAELCSSYQNLYFSSQSIVFIRIIGTYNSANEV 800
WD DDRSYSY VEVS+++ +WTMVAD++ C S+Q++ F Q FIRI+GT+N+ANEV
Sbjct: 489 WDCDDRSYSYYVEVSTNQQQWTMVADRTKVSCKSWQSVTFERQPASFIRIVGTHNTANEV 548
Query: 801 FHIVHLETYHQQI---ETSSDET 860
FH VH E QQ E +S+E+
Sbjct: 549 FHCVHFECPEQQSSQKEENSEES 571
Score = 125 bits (313), Expect = 2e-28
Identities = 61/137 (44%), Positives = 92/137 (67%), Gaps = 3/137 (2%)
Frame = +3
Query: 420 VPNYNVASIEHYATVIEGVSRSRNSLLNGETKNYNWDSGYTCHQLGN---GAIVVQLAQP 590
+P N+A++++ A V++G +S +LL+G+T+NY+ D G++ H + + I ++L QP
Sbjct: 272 IPEENIATMKYGAQVVKGELKS--ALLDGDTQNYDLDHGFSRHPIDDDCRSGIEIKLGQP 329
Query: 591 YIVNFIRFLLWDLDDRSYSYTVEVSSDRSKWTMVADKSAELCSSYQNLYFSSQSIVFIRI 770
I+N IR LLWD D RSYSY +EVS D W V D S LC S+Q LYF ++ +IRI
Sbjct: 330 SIINHIRILLWDRDSRSYSYFIEVSMDELDWVRVIDHSQYLCRSWQKLYFPARVCRYIRI 389
Query: 771 IGTYNSANEVFHIVHLE 821
+GT+N+ N++FHIV E
Sbjct: 390 VGTHNTVNKIFHIVAFE 406
>sp|Q9Y5S1|TRPV2_HUMAN Transient receptor potential cation channel subfamily V member 2
(TrpV2) (osm-9-like TRP channel 2) (OTRPC2) (Vanilloid
receptor-like protein 1) (VRL-1)
Length = 764
Score = 30.8 bits (68), Expect = 5.1
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Frame = +1
Query: 385 LIVFVSTSTIYRFPTTMWPQSSIMLL*LKVSVDHEIPC*MARRKIITGIRVTLV--INWV 558
+ +F+ T+ Y PT LK + + ++TG + L+ I +
Sbjct: 400 IYMFIFTAVAYHQPT------------LKKQAAPHLKAEVGNSMLLTGHILILLGGIYLL 447
Query: 559 TGQLWYSWLNHIL--LTLFDFYFGI 627
GQLWY W H+ ++ D YF I
Sbjct: 448 VGQLWYFWRRHVFIWISFIDSYFEI 472
>sp|P40071|YEU3_YEAST Hypothetical 81.5 kDa protein in USS1-BEB1 intergenic region
precursor
Length = 706
Score = 30.8 bits (68), Expect = 5.1
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Frame = +3
Query: 57 PEHIDPSETIFGEHLIEEQGRILIRLGNPSKINLIR------MYLLD---REGRSYSYIV 209
P H+ +E I G+ E ++ NP + R M LD REG +++
Sbjct: 96 PLHLSLNEIIRGDRKWESDYKLKFGEDNPCETLCARKTTKEGMQTLDKLVREGYVVQWLI 155
Query: 210 DVSLDQ-TSWITVTDYRRYICRSWQTLYFDP 299
D L T++I+ TD+++Y + + DP
Sbjct: 156 DDELPAATTFISTTDHKKYYASGFPLGFIDP 186
>sp|Q92PW3|LEXA_RHIME LexA repressor
Length = 238
Score = 30.0 bits (66), Expect = 8.7
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 390 SVRQHIDNIQVPNYNVASIEHYATVIEGVSRSRNSLLNGET 512
+++ ++ +I VP + S EHYA I+G S +L+G+T
Sbjct: 129 AIQNNMHDISVPVEMIGSGEHYALEIKGDSMIEAGILDGDT 169
>sp|P61605|LEXA_AGRTU LexA repressor
Length = 239
Score = 30.0 bits (66), Expect = 8.7
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 390 SVRQHIDNIQVPNYNVASIEHYATVIEGVSRSRNSLLNGET 512
+++ ++ +I VP + S EHYA I+G S +L+G+T
Sbjct: 130 AIQNNMHDISVPVEMIGSGEHYALEIKGDSMIEAGILDGDT 170
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,706,250
Number of Sequences: 369166
Number of extensions: 2166973
Number of successful extensions: 5765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5757
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)