Planaria EST Database


DrC_02455

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02455
         (654 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85227|UL51_PRVKA  Protein UL51                                 32   1.9  
sp|P98161|PKD1_HUMAN  Polycystin-1 precursor (Autosomal domi...    31   2.5  
sp|Q02629|NU100_YEAST  Nucleoporin NUP100/NSP100 (Nuclear po...    30   4.2  
sp|P46938|YAP1_MOUSE  65 kDa Yes-associated protein (YAP65)        30   7.2  
sp|Q9P1Z0|ZBTB4_HUMAN  Zinc finger and BTB domain containing...    30   7.2  
sp|P27545|LASS1_MOUSE  LAG1 longevity assurance homolog 1 (U...    30   7.2  
sp|Q92258|GRISA_PODAN  GRISEA protein (MAC1 homolog)               30   7.2  
sp|Q60929|MEF2A_MOUSE  Myocyte-specific enhancer factor 2A         30   7.2  
>sp|Q85227|UL51_PRVKA Protein UL51
          Length = 236

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = +3

Query: 132 RATPGLPFYPPRYEEAMGFNHGQHAPMEEKPPLLPPRVP 248
           RAT   P  PP  EEA     G   P ++  PLLPPR P
Sbjct: 181 RATAARPAPPPPPEEAGEDEEGDR-PEDDAAPLLPPRAP 218
>sp|P98161|PKD1_HUMAN Polycystin-1 precursor (Autosomal dominant polycystic kidney disease
            protein 1)
          Length = 4303

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +1

Query: 49   QMLACQEQDKITDLWLEVMLQISQLMKIEPHLDYR-FIHHDTRKQWDL 189
            Q+LAC+E +    L L+V+++ SQ   +E H+D R  + + T  +W++
Sbjct: 2142 QVLACREPEVDVVLPLQVLMRRSQRNYLEAHVDLRDCVTYQTEYRWEV 2189
>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 (Nuclear pore protein NUP100/NSP100)
          Length = 959

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
 Frame = +3

Query: 12  STAASNNPF--GTPANVGMSGAGQDNRSLAGSHAANFSTDENRATPGLPFYPP 164
           ST   N P   GT  N G+ GA   N S  GS    F  + N    G    PP
Sbjct: 533 STIGQNKPVFGGTTQNTGLFGATGTNSSAVGSTGKLFGQNNNTLNVGTQNVPP 585
>sp|P46938|YAP1_MOUSE 65 kDa Yes-associated protein (YAP65)
          Length = 472

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 126 ENRATPGL-PFYPPRYEEAMGFNHGQHAPMEEKPPLLPPRVPESSVSGAGTS 278
           +N+ T  L P   PR+  AM     Q AP+++ PPL  P+ P+  V G G+S
Sbjct: 237 KNKTTSWLDPRLDPRF--AMNQRITQSAPVKQPPPLA-PQSPQGGVLGGGSS 285
>sp|Q9P1Z0|ZBTB4_HUMAN Zinc finger and BTB domain containing protein 4 (KAISO-like zinc
            finger protein 1) (KAISO-L1)
          Length = 1013

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +3

Query: 105  AANFSTDENRATPGLPFYPPRYEEAMGFNHGQHAPMEEKPPLLPPRVP 248
            A N    + +    LPF P  +  A+       AP    PP LPP +P
Sbjct: 947  ALNMVLPDEKGAGALPFLPGVFGYAVNPQAAPPAPPTPPPPTLPPPIP 994
>sp|P27545|LASS1_MOUSE LAG1 longevity assurance homolog 1 (UOG-1 protein)
          Length = 350

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 512 IKHFF*FNILLLVVSVINFYHITILI*FTQHIL 610
           I ++F FNILLL++ V+N Y    ++ F   +L
Sbjct: 278 IPYYFFFNILLLLLMVMNIYWFLYIVAFAAKVL 310
>sp|Q92258|GRISA_PODAN GRISEA protein (MAC1 homolog)
          Length = 597

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 207 PMEEKPPLLPPRVPESSVSGAGTSC 281
           P ++ P ++PP  P+++ SG G SC
Sbjct: 300 PQQQMPNIMPPPQPQNAPSGGGGSC 324
>sp|Q60929|MEF2A_MOUSE Myocyte-specific enhancer factor 2A
          Length = 498

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 111 NFSTDENRATPGLPFYPPRYEEA-MGFNHGQHAPMEEKPPLLPPRVPESSV 260
           + +T++N      P  PPR      GF H  H P ++ PP  P   P   +
Sbjct: 391 SINTNQNINIKSEPISPPRDRMTPSGFQHHHHHPQQQPPPQPPQPQPRQEM 441
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,554,856
Number of Sequences: 369166
Number of extensions: 1452395
Number of successful extensions: 4100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4084
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5413810770
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)