Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02455
(654 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q85227|UL51_PRVKA Protein UL51 32 1.9
sp|P98161|PKD1_HUMAN Polycystin-1 precursor (Autosomal domi... 31 2.5
sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 (Nuclear po... 30 4.2
sp|P46938|YAP1_MOUSE 65 kDa Yes-associated protein (YAP65) 30 7.2
sp|Q9P1Z0|ZBTB4_HUMAN Zinc finger and BTB domain containing... 30 7.2
sp|P27545|LASS1_MOUSE LAG1 longevity assurance homolog 1 (U... 30 7.2
sp|Q92258|GRISA_PODAN GRISEA protein (MAC1 homolog) 30 7.2
sp|Q60929|MEF2A_MOUSE Myocyte-specific enhancer factor 2A 30 7.2
>sp|Q85227|UL51_PRVKA Protein UL51
Length = 236
Score = 31.6 bits (70), Expect = 1.9
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +3
Query: 132 RATPGLPFYPPRYEEAMGFNHGQHAPMEEKPPLLPPRVP 248
RAT P PP EEA G P ++ PLLPPR P
Sbjct: 181 RATAARPAPPPPPEEAGEDEEGDR-PEDDAAPLLPPRAP 218
>sp|P98161|PKD1_HUMAN Polycystin-1 precursor (Autosomal dominant polycystic kidney disease
protein 1)
Length = 4303
Score = 31.2 bits (69), Expect = 2.5
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 49 QMLACQEQDKITDLWLEVMLQISQLMKIEPHLDYR-FIHHDTRKQWDL 189
Q+LAC+E + L L+V+++ SQ +E H+D R + + T +W++
Sbjct: 2142 QVLACREPEVDVVLPLQVLMRRSQRNYLEAHVDLRDCVTYQTEYRWEV 2189
>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 (Nuclear pore protein NUP100/NSP100)
Length = 959
Score = 30.4 bits (67), Expect = 4.2
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +3
Query: 12 STAASNNPF--GTPANVGMSGAGQDNRSLAGSHAANFSTDENRATPGLPFYPP 164
ST N P GT N G+ GA N S GS F + N G PP
Sbjct: 533 STIGQNKPVFGGTTQNTGLFGATGTNSSAVGSTGKLFGQNNNTLNVGTQNVPP 585
>sp|P46938|YAP1_MOUSE 65 kDa Yes-associated protein (YAP65)
Length = 472
Score = 29.6 bits (65), Expect = 7.2
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 126 ENRATPGL-PFYPPRYEEAMGFNHGQHAPMEEKPPLLPPRVPESSVSGAGTS 278
+N+ T L P PR+ AM Q AP+++ PPL P+ P+ V G G+S
Sbjct: 237 KNKTTSWLDPRLDPRF--AMNQRITQSAPVKQPPPLA-PQSPQGGVLGGGSS 285
>sp|Q9P1Z0|ZBTB4_HUMAN Zinc finger and BTB domain containing protein 4 (KAISO-like zinc
finger protein 1) (KAISO-L1)
Length = 1013
Score = 29.6 bits (65), Expect = 7.2
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 105 AANFSTDENRATPGLPFYPPRYEEAMGFNHGQHAPMEEKPPLLPPRVP 248
A N + + LPF P + A+ AP PP LPP +P
Sbjct: 947 ALNMVLPDEKGAGALPFLPGVFGYAVNPQAAPPAPPTPPPPTLPPPIP 994
>sp|P27545|LASS1_MOUSE LAG1 longevity assurance homolog 1 (UOG-1 protein)
Length = 350
Score = 29.6 bits (65), Expect = 7.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 512 IKHFF*FNILLLVVSVINFYHITILI*FTQHIL 610
I ++F FNILLL++ V+N Y ++ F +L
Sbjct: 278 IPYYFFFNILLLLLMVMNIYWFLYIVAFAAKVL 310
>sp|Q92258|GRISA_PODAN GRISEA protein (MAC1 homolog)
Length = 597
Score = 29.6 bits (65), Expect = 7.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 207 PMEEKPPLLPPRVPESSVSGAGTSC 281
P ++ P ++PP P+++ SG G SC
Sbjct: 300 PQQQMPNIMPPPQPQNAPSGGGGSC 324
>sp|Q60929|MEF2A_MOUSE Myocyte-specific enhancer factor 2A
Length = 498
Score = 29.6 bits (65), Expect = 7.2
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 111 NFSTDENRATPGLPFYPPRYEEA-MGFNHGQHAPMEEKPPLLPPRVPESSV 260
+ +T++N P PPR GF H H P ++ PP P P +
Sbjct: 391 SINTNQNINIKSEPISPPRDRMTPSGFQHHHHHPQQQPPPQPPQPQPRQEM 441
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,554,856
Number of Sequences: 369166
Number of extensions: 1452395
Number of successful extensions: 4100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4084
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5413810770
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)