Planaria EST Database


DrC_02454

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02454
         (831 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P53064|RTF1_YEAST  Protein RTF1                                 75   2e-13
sp|Q97FK1|SBCC_CLOAB  Nuclease sbcCD subunit C                     39   0.013
sp|P35415|MYSP1_DROME  Paramyosin, long form                       34   0.56 
sp|Q9PKW5|RECF_CHLMU  DNA replication and repair protein recF      33   0.74 
sp|P14242|PMS1_YEAST  DNA mismatch repair protein PMS1             33   1.3  
sp|P59242|CING_MOUSE  Cingulin                                     32   1.6  
sp|P57997|IF2C_PHAVU  Translation initiation factor IF-2, ch...    32   2.1  
sp|P53959|COG6_YEAST  Conserved oligomeric Golgi complex com...    32   2.8  
sp|P32908|SMC1_YEAST  Structural maintenance of chromosome 1...    31   3.7  
sp|O83521|CLPX_TREPA  ATP-dependent Clp protease ATP-binding...    31   3.7  
>sp|P53064|RTF1_YEAST Protein RTF1
          Length = 558

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 57/243 (23%), Positives = 118/243 (48%), Gaps = 6/243 (2%)
 Frame = +2

Query: 116 LDQLSRIRLSRNKMEKWVHMPFFKDLVKGCFVRVNIG-EGPSVQPIYRCAEVIEVVETVK 292
           +   +++R+ R+ + K+   P F+D VKGC+ RVN+G +  + +  YR    IE V   K
Sbjct: 241 ISDFNKLRIGRSFVAKFCFYPGFEDAVKGCYGRVNVGTDKRTGKTSYRMVR-IERVFLQK 299

Query: 293 IYDLGSTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSVEFESWRRRVISDGMPLPKLSFIE 472
            Y++G   TN    +  GK    F++ + S+  F   E++ + R + +  M  P L  + 
Sbjct: 300 PYNMGKFYTNQYFGVTQGKDRKVFQMNYFSDGLFAEDEYQRYLRALDNSQMIKPSLHSLS 359

Query: 473 EKARQIKEYSNFSINDEQTMQKVLMSKQRFQK--GPVNFAVRKAEL-TRLKLAAETDG-- 637
            K +++ ++ N  + D +T  +V+  + +F K     N  + K  L  +L+ A ET+   
Sbjct: 360 NKTKEVMDFVNTPLTD-KTTDEVVRHRMQFNKKLSGTNAVLEKTVLREKLQYAKETNNEK 418

Query: 638 DIVQANKFQDEIDELNLKAEKLERKRTTGIKNISYINQRNREITQNHVEKAIELEIAENR 817
           DI + +      ++     EK      + IK +  +  +NR++  +++  A  ++  ++ 
Sbjct: 419 DIAKYSAQLRNFEKRMSVYEKHHENDQSDIKKLGELTSKNRKLNMSNIRNAEHVKKEDSN 478

Query: 818 EWE 826
            ++
Sbjct: 479 NFD 481
>sp|Q97FK1|SBCC_CLOAB Nuclease sbcCD subunit C
          Length = 1163

 Score = 39.3 bits (90), Expect = 0.013
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
 Frame = +2

Query: 455  KLSFIEEKARQ-----IKEYSNFS------INDEQTMQKVLMSK--QRFQKGPVNFAVRK 595
            K++ IE+K R+     IK +SN S      +ND   + K+LM +  +  +K   N+   K
Sbjct: 844  KMNEIEDKYRKCSDEIIKYHSNLSSLKDRKVNDIDKLNKILMEEKFENIEKAKENYLNDK 903

Query: 596  AELTRLKLAAETDGDIVQANKFQDEIDELNLKAEKLERKRTTGIKNISYINQRNREITQN 775
             E+  LK   E         K+++E+ ++N   E L +K    +KN     ++  EI  N
Sbjct: 904  -EINLLKSDVE---------KYKNELSKVNGAVEVLSKK----LKNRKLTEEKWIEIQNN 949

Query: 776  HVEKAIELEIAENR 817
             VEKA + +  + R
Sbjct: 950  RVEKASKAKALQER 963
>sp|P35415|MYSP1_DROME Paramyosin, long form
          Length = 879

 Score = 33.9 bits (76), Expect = 0.56
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
 Frame = +2

Query: 470 EEKARQIKEYSNFSINDEQTMQKVLM-SKQRFQKGPVNFAVRKAELTRLKLAAETDGDIV 646
           EE    +K+  N  I D Q   ++L  +K R +K    F     EL   ++ +     IV
Sbjct: 115 EETTLLLKKKHNEIITDFQEQVEILTKNKARAEKDKAKFQTEVYELLS-QIESYNKEKIV 173

Query: 647 QA---NKFQDEIDELNLKAEKLERKRTTGIKNISYINQRNREITQNHVEKAIELE 802
                +K +  I ELN+K E+L R       + S ++Q N E+T++  +  ++L+
Sbjct: 174 SEKHISKLEVSISELNVKIEELNRTVIDISSHRSRLSQENIELTKDVQDLKVQLD 228
>sp|Q9PKW5|RECF_CHLMU DNA replication and repair protein recF
          Length = 365

 Score = 33.5 bits (75), Expect = 0.74
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
 Frame = +2

Query: 167 VHMPFFKDLVKGCFVRVNIGEGPSVQPIY--RCAEVIEVVETVKIYDLG-STRTN-VGLK 334
           VH  F KD      +R+ +G  P +  I+         ++E + I  LG S RT+ +   
Sbjct: 3   VHSLFLKDFRNYSELRLELG--PEMNSIFGLNAQGKTNILEALYILSLGRSFRTSRLTEA 60

Query: 335 LKIGKSVTTFRLIFVSNQDFQ--SVEFESWRRRVISDGMPLPKLS 463
           ++ G S      +F  NQ F   S++ +   ++++ DG P+ KLS
Sbjct: 61  IRFGSSHFFIEAVFSQNQVFHTLSIQVDKRGKKILFDGAPITKLS 105
>sp|P14242|PMS1_YEAST DNA mismatch repair protein PMS1
          Length = 904

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +2

Query: 656 KFQDEIDELNLKAEKLERKRTTGIKNISYINQRNREITQNHVEKAIELEIAENRE 820
           KF+DEI E NL  +  +     G +  S I++R  E  +N ++   ELE  E  E
Sbjct: 636 KFEDEILEYNLSTKNFKEISKNGKQMSSIISKRKSEAQENIIKNKDELEDFEQGE 690
>sp|P59242|CING_MOUSE Cingulin
          Length = 1191

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
 Frame = +2

Query: 521 EQTMQKVLMSKQRFQKGPVNFAVRKAELTRLKLAAET------------DGDIVQAN--- 655
           E+T ++    +  FQK        K EL +L++  E               D+ QA    
Sbjct: 550 EETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARAST 609

Query: 656 KFQDEIDELNLKAEKLERKRTTGIKNISYINQRNREITQNHVEKAIELEIAENRE 820
           +   +++EL     K E +RT G        Q+N+E+T  H  + +E ++A  RE
Sbjct: 610 RDTHQVEEL-----KKELRRTQGELKELQAEQQNQEVTGRHRNQVLEKQLAALRE 659
>sp|P57997|IF2C_PHAVU Translation initiation factor IF-2, chloroplast precursor (PvIF2cp)
          Length = 1012

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 623 AETDGDIVQANKFQDEIDELNLKAEKLERKRTTGIKNISYINQ--RNREITQNHVEKAI 793
           + T GD+ + NK  + + E+  KAEKL   +  G KN   +N+  RN        E+ +
Sbjct: 123 SRTTGDVEERNKVIESLGEVLEKAEKLGSSKVNGDKNNGSVNKPVRNNANASPRTERPV 181
>sp|P53959|COG6_YEAST Conserved oligomeric Golgi complex component 6 (Complexed with DOR1
           protein 2)
          Length = 839

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +2

Query: 584 AVRKAELTRLKLAAETDGDIVQANKFQDEIDELNLKAE--KLERKRTTGIKNISYINQRN 757
           +V K + T  KL +    ++   N    EID+  LKAE  KL++K    I++   +NQ  
Sbjct: 231 SVEKIQRTSEKLLSNETNEVPTNNVVLQEIDQYRLKAEQLKLKKKILLSIRDRFTLNQVE 290

Query: 758 REITQNHVEKAIELEIAE 811
            ++  N     I  E+ +
Sbjct: 291 DDVITNGTIDNIFFEVVK 308
>sp|P32908|SMC1_YEAST Structural maintenance of chromosome 1 (DA-box protein SMC1)
          Length = 1225

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +2

Query: 467 IEEKARQIKEYSNFSINDEQTMQKVLMSKQRFQ--KGPVNFAVRKAELTRLKLAAETDGD 640
           I+ K    K+YS F  N+      +L+  + F   +G V     ++ +   ++  E  G 
Sbjct: 121 IDGKTVSYKDYSIFLENEN-----ILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGS 175

Query: 641 IVQANKFQDEIDELNLKAEKLERKRTTGIKN 733
           I    +++ E +EL  K EKL +  T  IKN
Sbjct: 176 I----QYKKEYEELKEKIEKLSKSATESIKN 202
>sp|O83521|CLPX_TREPA ATP-dependent Clp protease ATP-binding subunit clpX
          Length = 415

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 16/121 (13%)
 Frame = +2

Query: 494 EYSNFSINDEQTMQKVLMSKQRFQKGPVNFAVRKA-------------ELTRLKLAAETD 634
           E SN  +       K L++K   QK  V FA+  A             E   LKL    +
Sbjct: 109 EKSNVLLIGPTGSGKTLLAKTLSQKMKVPFAIADATTLTEAGYVGEDVENILLKLVQNAN 168

Query: 635 GDIVQANK---FQDEIDELNLKAEKLERKRTTGIKNISYINQRNREITQNHVEKAIELEI 805
           GD+  A +   F DEID+++ K+E           N+S     + E  Q  + K IE  I
Sbjct: 169 GDVALAERGIIFIDEIDKISRKSE-----------NVSITRDVSGEGVQQALLKIIEGTI 217

Query: 806 A 808
           A
Sbjct: 218 A 218
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,492,387
Number of Sequences: 369166
Number of extensions: 1419143
Number of successful extensions: 4638
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4633
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)