Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02431
(649 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UBF2|COPG2_HUMAN Coatomer gamma-2 subunit (Gamma-2 coa... 96 6e-20
sp|Q9Y678|COPG_HUMAN Coatomer gamma subunit (Gamma-coat pro... 96 8e-20
sp|P53620|COPG_BOVIN Coatomer gamma subunit (Gamma-coat pro... 94 3e-19
sp|Q9QXK3|COPG2_MOUSE Coatomer gamma-2 subunit (Gamma-2 coa... 94 3e-19
sp|Q22498|COPG_CAEEL Probable coatomer gamma subunit (Gamma... 69 1e-11
sp|P87140|COPG_SCHPO Probable coatomer gamma subunit (Gamma... 59 1e-08
sp|P32074|COPG_YEAST Coatomer gamma subunit (Gamma-coat pro... 33 0.49
sp|P21464|RS2_BACSU 30S ribosomal protein S2 (BS1) (Vegetat... 32 1.9
sp|Q8EQV3|RS2_OCEIH 30S ribosomal protein S2 31 3.2
sp|Q88VJ4|RS2_LACPL 30S ribosomal protein S2 30 5.4
>sp|Q9UBF2|COPG2_HUMAN Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)
Length = 871
Score = 96.3 bits (238), Expect = 6e-20
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 4/178 (2%)
Frame = +3
Query: 12 AEGFEIEGCIPCSKLEYETPGKVYVVLRFSDDPQMCMT---TVTSKLVFKVLEIGQDGDE 182
++ +E+ CIP L Y PG Y ++R DD + + T K + + +
Sbjct: 681 SDSYEVLSCIPAPSLPYNQPGICYTLVRLPDDDPTAVAGSFSCTMKFTVRDCDPNTGVPD 740
Query: 183 SEVYEDEYPLENMXXXXXXXXXXXXXTNFATAWDDLGKDNELSQVYSFETITTIEEMVKK 362
+ Y+DEY LE++ NFA AW+++G E + ++ + T+EE V
Sbjct: 741 EDGYDDEYVLEDLEVTVSDHIQKVLKPNFAAAWEEVGDTFEKEETFALSSTKTLEEAVNN 800
Query: 363 -LEELGLQACDNTGVTDPNKSSHVLLLAGKFRGDHEVLINCKIVKGIQSGVNIQFTVR 533
+ LG+Q C+ + NK+SH L LAG FRG +++L+ ++ + GV +Q TVR
Sbjct: 801 IITFLGMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRL--ALADGVTMQVTVR 856
>sp|Q9Y678|COPG_HUMAN Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
Length = 874
Score = 95.9 bits (237), Expect = 8e-20
Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 4/180 (2%)
Frame = +3
Query: 15 EGFEIEGCIPCSKLEYETPGKVYVVLRF-SDDPQMCMTTVTSKLVFKVLEIGQDGDES-- 185
E +E+ +P L Y PG Y ++ +DP T + + F V + E+
Sbjct: 685 EAYEVLCYVPARSLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETDD 744
Query: 186 EVYEDEYPLENMXXXXXXXXXXXXXTNFATAWDDLGKDNELSQVYSFETITTIEEMVKKL 365
E YEDEY LE++ NF AWD++G + E + ++ TI T+EE V +
Sbjct: 745 EGYEDEYVLEDLEVTVADHIQKVMKLNFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNI 804
Query: 366 EE-LGLQACDNTGVTDPNKSSHVLLLAGKFRGDHEVLINCKIVKGIQSGVNIQFTVRCVD 542
+ LG+ C+ + NK++H LLLAG FRG H++L+ +++ + V +Q T R ++
Sbjct: 805 VKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLL--LLDTVTMQVTARSLE 862
>sp|P53620|COPG_BOVIN Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
Length = 874
Score = 94.0 bits (232), Expect = 3e-19
Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Frame = +3
Query: 12 AEGFEIEGCIPCSKLEYETPGKVYVVLRF-SDDPQMCMTTVTSKLVFKVLEIGQDGDES- 185
+E +E+ +P L Y PG Y ++ +DP T + + F V + E+
Sbjct: 684 SEAYEVLCYVPARSLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEAD 743
Query: 186 -EVYEDEYPLENMXXXXXXXXXXXXXTNFATAWDDLGKDNELSQVYSFETITTIEEMVKK 362
E YEDEY LE++ NF AWD++G + + + ++ TI T+EE V
Sbjct: 744 DEGYEDEYVLEDLEVTIADHIQKVMKLNFEAAWDEVGDEFQKEETFTLSTIKTLEEAVGN 803
Query: 363 LEE-LGLQACDNTGVTDPNKSSHVLLLAGKFRGDHEVLINCKIVKGIQSGVNIQFTVR 533
+ + LG+ C+ + NK++H LLLAG FRG H++L+ +++ + V +Q T R
Sbjct: 804 IVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLL--LLDTVTMQVTAR 859
>sp|Q9QXK3|COPG2_MOUSE Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)
Length = 871
Score = 94.0 bits (232), Expect = 3e-19
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 4/178 (2%)
Frame = +3
Query: 12 AEGFEIEGCIPCSKLEYETPGKVYVVLRFSD-DPQMCMTTVTSKLVFKVLEIGQDGD--E 182
++ +E+ CIP L Y PG Y ++R D DP T + + F V + + +
Sbjct: 681 SDSYEVLCCIPAPSLPYNQPGICYTLVRLPDEDPTAVAGTFSCTMKFTVRDCDPNTGVPD 740
Query: 183 SEVYEDEYPLENMXXXXXXXXXXXXXTNFATAWDDLGKDNELSQVYSFETITTIEEMVKK 362
+ Y+DEY LE++ NFA AW+++G E + ++ + T+EE V
Sbjct: 741 EDGYDDEYVLEDLEVTVSDHIQKILKPNFAAAWEEVGDAFEKEETFALSSTKTLEEAVNN 800
Query: 363 -LEELGLQACDNTGVTDPNKSSHVLLLAGKFRGDHEVLINCKIVKGIQSGVNIQFTVR 533
+ LG+Q C+ + NK+SH L LAG +RG +++L+ ++ + GV +Q TVR
Sbjct: 801 IITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRL--ALADGVTMQVTVR 856
>sp|Q22498|COPG_CAEEL Probable coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
Length = 870
Score = 68.6 bits (166), Expect = 1e-11
Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 4/155 (2%)
Frame = +3
Query: 21 FEIEGCIPCSKLEYETPGKVYVVLRFSDDPQMCMTTVTSKLVFKVLEIGQ---DGDESEV 191
+E + KL Y + +L F D + ++ + L FKV+++ + D +
Sbjct: 681 WETGNTVQIDKLPYGEVHSAFSLLEFPDSGAIS-GSLGAILKFKVMDVDPTSGEPDSDDT 739
Query: 192 YEDEYPLENMXXXXXXXXXXXXXTNFATAWDDLGKDNELSQVYSFETITTIEEMVKKLEE 371
YE Y LE + ++F +AW+ LG D + + T+ I + VKK+ E
Sbjct: 740 YEQTYVLEEVDVNVSDSVQGVAKSSFGSAWEALGDDATREETFQLSTVENIPDAVKKISE 799
Query: 372 -LGLQACDNTGVTDPNKSSHVLLLAGKFRGDHEVL 473
LGL C+ + K+ H + L+G FRG ++VL
Sbjct: 800 ILGLVPCERSDRVPEGKTQHTVFLSGVFRGGYDVL 834
>sp|P87140|COPG_SCHPO Probable coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
Length = 905
Score = 58.5 bits (140), Expect = 1e-08
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 4/173 (2%)
Frame = +3
Query: 27 IEGCIPCSKLEYETPGKVYVVLRFSDDPQMCMTTVTSKLVF--KVLEIGQDGDESEVYED 200
+E C+ + + P ++V +F+D +TT+T+ L F K ++I E E YED
Sbjct: 721 VEECVVPAAIVSGEPVSIFVSFKFNDSVPYPLTTLTNTLQFTTKEIDIHTGEPEEEGYED 780
Query: 201 EYPLENMXXXXXXXXXXXXXTNFATAWDDLGKDNELSQVYSFETITTIEEMVKKLEELGL 380
EY ++++ +NF +D L ++E S+VY + + ++ EL L
Sbjct: 781 EYKIDDLDVSAGDFISPAYESNFDGLFDSL--EHEASEVYVLSLLDSFRSTCSRVAEL-L 837
Query: 381 QACDNTGVTDP-NKSSHVLLLAGKFRGDHEVLINCKIVKGIQ-SGVNIQFTVR 533
Q G +P +K HV+ L+GK +VL K+ G+ I+ R
Sbjct: 838 QMQPLEGTENPTDKPVHVMKLSGKLVNGEKVLALVKMAHSKDGEGITIKVIAR 890
>sp|P32074|COPG_YEAST Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
Length = 935
Score = 33.5 bits (75), Expect = 0.49
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Frame = +3
Query: 81 YVVLRFSDDPQMCMTTVTSKLVFKVLEIGQDGDE----SEVYEDEYPLENMXXXXXXXXX 248
YV + D+ + M + L F EI D +E E ++DEY ++++
Sbjct: 768 YVAFKKLDE--IVMEGFLNNLTFTTKEINPDTNEPFDGDEGFQDEYEIDSIFLNAGDYVK 825
Query: 249 XXXXTNFATAWDDLGKDNELSQVYSFETITTIEEMVKK-LEELGLQACDNTGVTDPNKSS 425
NF+ +D+L E V++ + +I+E+V K + ++T + +S
Sbjct: 826 SSFTGNFSATFDEL--PCEEVAVFNIQEDLSIQEVVDKIILNSSCLPVESTQFAPSDSNS 883
Query: 426 HVLLLAGK 449
H L L GK
Sbjct: 884 HTLKLFGK 891
>sp|P21464|RS2_BACSU 30S ribosomal protein S2 (BS1) (Vegetative protein 209) (VEG209)
Length = 246
Score = 31.6 bits (70), Expect = 1.9
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 69 PGKVYVVLRFSDDPQMCMTTVTSKLVFKVLEIGQDGDESEVYEDEYP 209
P ++ VV+ +DD + +TSK+ +LE Q +E+EV E+ P
Sbjct: 193 PDEIDVVIPANDDAIRAVKLLTSKMADAILEAKQGEEEAEVAEETAP 239
>sp|Q8EQV3|RS2_OCEIH 30S ribosomal protein S2
Length = 254
Score = 30.8 bits (68), Expect = 3.2
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +3
Query: 69 PGKVYVVLRFSDDPQMCMTTVTSKLVFKVLEIGQDGDESEVYEDE 203
P ++ V+ +DD + +TSK+ +LE+ Q G+E+EV E+E
Sbjct: 193 PDEIDYVIPANDDAIRAVKLLTSKMADAILEVKQ-GEETEVVEEE 236
>sp|Q88VJ4|RS2_LACPL 30S ribosomal protein S2
Length = 267
Score = 30.0 bits (66), Expect = 5.4
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +3
Query: 69 PGKVYVVLRFSDDPQMCMTTVTSKLVFKVLEIGQDGDESEVYEDEY 206
P + V++ +DD + +TSK+ V+E G+ G++ +V ED +
Sbjct: 193 PDDIDVIIPSNDDAIRAVRLITSKMADAVIE-GRQGEDEDVTEDSF 237
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,355,801
Number of Sequences: 369166
Number of extensions: 1320833
Number of successful extensions: 3041
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3033
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)