Planaria EST Database


DrC_02431

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02431
         (649 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UBF2|COPG2_HUMAN  Coatomer gamma-2 subunit (Gamma-2 coa...    96   6e-20
sp|Q9Y678|COPG_HUMAN  Coatomer gamma subunit (Gamma-coat pro...    96   8e-20
sp|P53620|COPG_BOVIN  Coatomer gamma subunit (Gamma-coat pro...    94   3e-19
sp|Q9QXK3|COPG2_MOUSE  Coatomer gamma-2 subunit (Gamma-2 coa...    94   3e-19
sp|Q22498|COPG_CAEEL  Probable coatomer gamma subunit (Gamma...    69   1e-11
sp|P87140|COPG_SCHPO  Probable coatomer gamma subunit (Gamma...    59   1e-08
sp|P32074|COPG_YEAST  Coatomer gamma subunit (Gamma-coat pro...    33   0.49 
sp|P21464|RS2_BACSU  30S ribosomal protein S2 (BS1) (Vegetat...    32   1.9  
sp|Q8EQV3|RS2_OCEIH  30S ribosomal protein S2                      31   3.2  
sp|Q88VJ4|RS2_LACPL  30S ribosomal protein S2                      30   5.4  
>sp|Q9UBF2|COPG2_HUMAN Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)
          Length = 871

 Score = 96.3 bits (238), Expect = 6e-20
 Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 4/178 (2%)
 Frame = +3

Query: 12   AEGFEIEGCIPCSKLEYETPGKVYVVLRFSDDPQMCMT---TVTSKLVFKVLEIGQDGDE 182
            ++ +E+  CIP   L Y  PG  Y ++R  DD    +    + T K   +  +      +
Sbjct: 681  SDSYEVLSCIPAPSLPYNQPGICYTLVRLPDDDPTAVAGSFSCTMKFTVRDCDPNTGVPD 740

Query: 183  SEVYEDEYPLENMXXXXXXXXXXXXXTNFATAWDDLGKDNELSQVYSFETITTIEEMVKK 362
             + Y+DEY LE++              NFA AW+++G   E  + ++  +  T+EE V  
Sbjct: 741  EDGYDDEYVLEDLEVTVSDHIQKVLKPNFAAAWEEVGDTFEKEETFALSSTKTLEEAVNN 800

Query: 363  -LEELGLQACDNTGVTDPNKSSHVLLLAGKFRGDHEVLINCKIVKGIQSGVNIQFTVR 533
             +  LG+Q C+ +     NK+SH L LAG FRG +++L+  ++   +  GV +Q TVR
Sbjct: 801  IITFLGMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRL--ALADGVTMQVTVR 856
>sp|Q9Y678|COPG_HUMAN Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
          Length = 874

 Score = 95.9 bits (237), Expect = 8e-20
 Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 4/180 (2%)
 Frame = +3

Query: 15   EGFEIEGCIPCSKLEYETPGKVYVVLRF-SDDPQMCMTTVTSKLVFKVLEIGQDGDES-- 185
            E +E+   +P   L Y  PG  Y ++    +DP     T +  + F V +      E+  
Sbjct: 685  EAYEVLCYVPARSLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETDD 744

Query: 186  EVYEDEYPLENMXXXXXXXXXXXXXTNFATAWDDLGKDNELSQVYSFETITTIEEMVKKL 365
            E YEDEY LE++              NF  AWD++G + E  + ++  TI T+EE V  +
Sbjct: 745  EGYEDEYVLEDLEVTVADHIQKVMKLNFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNI 804

Query: 366  EE-LGLQACDNTGVTDPNKSSHVLLLAGKFRGDHEVLINCKIVKGIQSGVNIQFTVRCVD 542
             + LG+  C+ +     NK++H LLLAG FRG H++L+  +++  +   V +Q T R ++
Sbjct: 805  VKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLL--LLDTVTMQVTARSLE 862
>sp|P53620|COPG_BOVIN Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
          Length = 874

 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
 Frame = +3

Query: 12   AEGFEIEGCIPCSKLEYETPGKVYVVLRF-SDDPQMCMTTVTSKLVFKVLEIGQDGDES- 185
            +E +E+   +P   L Y  PG  Y ++    +DP     T +  + F V +      E+ 
Sbjct: 684  SEAYEVLCYVPARSLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEAD 743

Query: 186  -EVYEDEYPLENMXXXXXXXXXXXXXTNFATAWDDLGKDNELSQVYSFETITTIEEMVKK 362
             E YEDEY LE++              NF  AWD++G + +  + ++  TI T+EE V  
Sbjct: 744  DEGYEDEYVLEDLEVTIADHIQKVMKLNFEAAWDEVGDEFQKEETFTLSTIKTLEEAVGN 803

Query: 363  LEE-LGLQACDNTGVTDPNKSSHVLLLAGKFRGDHEVLINCKIVKGIQSGVNIQFTVR 533
            + + LG+  C+ +     NK++H LLLAG FRG H++L+  +++  +   V +Q T R
Sbjct: 804  IVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLL--LLDTVTMQVTAR 859
>sp|Q9QXK3|COPG2_MOUSE Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)
          Length = 871

 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 4/178 (2%)
 Frame = +3

Query: 12   AEGFEIEGCIPCSKLEYETPGKVYVVLRFSD-DPQMCMTTVTSKLVFKVLEIGQDGD--E 182
            ++ +E+  CIP   L Y  PG  Y ++R  D DP     T +  + F V +   +    +
Sbjct: 681  SDSYEVLCCIPAPSLPYNQPGICYTLVRLPDEDPTAVAGTFSCTMKFTVRDCDPNTGVPD 740

Query: 183  SEVYEDEYPLENMXXXXXXXXXXXXXTNFATAWDDLGKDNELSQVYSFETITTIEEMVKK 362
             + Y+DEY LE++              NFA AW+++G   E  + ++  +  T+EE V  
Sbjct: 741  EDGYDDEYVLEDLEVTVSDHIQKILKPNFAAAWEEVGDAFEKEETFALSSTKTLEEAVNN 800

Query: 363  -LEELGLQACDNTGVTDPNKSSHVLLLAGKFRGDHEVLINCKIVKGIQSGVNIQFTVR 533
             +  LG+Q C+ +     NK+SH L LAG +RG +++L+  ++   +  GV +Q TVR
Sbjct: 801  IITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRL--ALADGVTMQVTVR 856
>sp|Q22498|COPG_CAEEL Probable coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
          Length = 870

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 4/155 (2%)
 Frame = +3

Query: 21   FEIEGCIPCSKLEYETPGKVYVVLRFSDDPQMCMTTVTSKLVFKVLEIGQ---DGDESEV 191
            +E    +   KL Y      + +L F D   +   ++ + L FKV+++     + D  + 
Sbjct: 681  WETGNTVQIDKLPYGEVHSAFSLLEFPDSGAIS-GSLGAILKFKVMDVDPTSGEPDSDDT 739

Query: 192  YEDEYPLENMXXXXXXXXXXXXXTNFATAWDDLGKDNELSQVYSFETITTIEEMVKKLEE 371
            YE  Y LE +             ++F +AW+ LG D    + +   T+  I + VKK+ E
Sbjct: 740  YEQTYVLEEVDVNVSDSVQGVAKSSFGSAWEALGDDATREETFQLSTVENIPDAVKKISE 799

Query: 372  -LGLQACDNTGVTDPNKSSHVLLLAGKFRGDHEVL 473
             LGL  C+ +      K+ H + L+G FRG ++VL
Sbjct: 800  ILGLVPCERSDRVPEGKTQHTVFLSGVFRGGYDVL 834
>sp|P87140|COPG_SCHPO Probable coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
          Length = 905

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 4/173 (2%)
 Frame = +3

Query: 27   IEGCIPCSKLEYETPGKVYVVLRFSDDPQMCMTTVTSKLVF--KVLEIGQDGDESEVYED 200
            +E C+  + +    P  ++V  +F+D     +TT+T+ L F  K ++I     E E YED
Sbjct: 721  VEECVVPAAIVSGEPVSIFVSFKFNDSVPYPLTTLTNTLQFTTKEIDIHTGEPEEEGYED 780

Query: 201  EYPLENMXXXXXXXXXXXXXTNFATAWDDLGKDNELSQVYSFETITTIEEMVKKLEELGL 380
            EY ++++             +NF   +D L  ++E S+VY    + +      ++ EL L
Sbjct: 781  EYKIDDLDVSAGDFISPAYESNFDGLFDSL--EHEASEVYVLSLLDSFRSTCSRVAEL-L 837

Query: 381  QACDNTGVTDP-NKSSHVLLLAGKFRGDHEVLINCKIVKGIQ-SGVNIQFTVR 533
            Q     G  +P +K  HV+ L+GK     +VL   K+       G+ I+   R
Sbjct: 838  QMQPLEGTENPTDKPVHVMKLSGKLVNGEKVLALVKMAHSKDGEGITIKVIAR 890
>sp|P32074|COPG_YEAST Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
          Length = 935

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
 Frame = +3

Query: 81   YVVLRFSDDPQMCMTTVTSKLVFKVLEIGQDGDE----SEVYEDEYPLENMXXXXXXXXX 248
            YV  +  D+  + M    + L F   EI  D +E     E ++DEY ++++         
Sbjct: 768  YVAFKKLDE--IVMEGFLNNLTFTTKEINPDTNEPFDGDEGFQDEYEIDSIFLNAGDYVK 825

Query: 249  XXXXTNFATAWDDLGKDNELSQVYSFETITTIEEMVKK-LEELGLQACDNTGVTDPNKSS 425
                 NF+  +D+L    E   V++ +   +I+E+V K +        ++T     + +S
Sbjct: 826  SSFTGNFSATFDEL--PCEEVAVFNIQEDLSIQEVVDKIILNSSCLPVESTQFAPSDSNS 883

Query: 426  HVLLLAGK 449
            H L L GK
Sbjct: 884  HTLKLFGK 891
>sp|P21464|RS2_BACSU 30S ribosomal protein S2 (BS1) (Vegetative protein 209) (VEG209)
          Length = 246

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 69  PGKVYVVLRFSDDPQMCMTTVTSKLVFKVLEIGQDGDESEVYEDEYP 209
           P ++ VV+  +DD    +  +TSK+   +LE  Q  +E+EV E+  P
Sbjct: 193 PDEIDVVIPANDDAIRAVKLLTSKMADAILEAKQGEEEAEVAEETAP 239
>sp|Q8EQV3|RS2_OCEIH 30S ribosomal protein S2
          Length = 254

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +3

Query: 69  PGKVYVVLRFSDDPQMCMTTVTSKLVFKVLEIGQDGDESEVYEDE 203
           P ++  V+  +DD    +  +TSK+   +LE+ Q G+E+EV E+E
Sbjct: 193 PDEIDYVIPANDDAIRAVKLLTSKMADAILEVKQ-GEETEVVEEE 236
>sp|Q88VJ4|RS2_LACPL 30S ribosomal protein S2
          Length = 267

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 69  PGKVYVVLRFSDDPQMCMTTVTSKLVFKVLEIGQDGDESEVYEDEY 206
           P  + V++  +DD    +  +TSK+   V+E G+ G++ +V ED +
Sbjct: 193 PDDIDVIIPSNDDAIRAVRLITSKMADAVIE-GRQGEDEDVTEDSF 237
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,355,801
Number of Sequences: 369166
Number of extensions: 1320833
Number of successful extensions: 3041
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3033
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)