Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02429
(904 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15392|DHC24_HUMAN 24-dehydrocholesterol reductase precu... 217 4e-56
sp|Q60HC5|DHC24_MACFA 24-dehydrocholesterol reductase precu... 217 4e-56
sp|P93472|DIM_PEA Cell elongation protein diminuto 202 1e-51
sp|O17397|DIML_CAEEL Diminuto-like protein 189 1e-47
sp|Q39085|DIM_ARATH Cell elongation protein DIMINUTO (Cell ... 184 4e-46
sp|Q9HDX8|ALO_SCHPO D-arabinono-1,4-lactone oxidase (ALO) (... 34 0.49
sp|Q9LTL8|C71BO_ARATH Cytochrome P450 71B24 32 1.9
sp|Q9Z972|SYI_CHLPN Isoleucyl-tRNA synthetase (Isoleucine--... 32 1.9
sp|Q8K9B0|EX5C_BUCAP Exodeoxyribonuclease V gamma chain 32 3.2
sp|P43485|MCRA_STRLA Mitomycin radical oxidase 31 4.1
>sp|Q15392|DHC24_HUMAN 24-dehydrocholesterol reductase precursor (3-beta-hydroxysterol
delta-24-reductase) (Seladin-1) (Diminuto/dwarf1
homolog)
Length = 516
Score = 217 bits (552), Expect = 4e-56
Identities = 109/254 (42%), Positives = 160/254 (62%)
Frame = +1
Query: 13 VTTHSHKVGLFQETIVSYGLVLSDGSYINVTRENEHSDLFYCLPWSHGSLGFLVSLELKI 192
+ + SHK GLFQ +Y LVL+DGS++ T +E+SDLFY +PWS G+LGFLV+ E++I
Sbjct: 173 IESSSHKYGLFQHICTAYELVLADGSFVRCT-PSENSDLFYAVPWSCGTLGFLVAAEIRI 231
Query: 193 IPATKYIQLRYRPVVGLENYCNQIRQFSGAENAHNPDIPDFLEATIFTHDESVIIFGNFI 372
IPA KY++LR+ PV GLE C + S + H F+E +++ DE+VI+ G
Sbjct: 232 IPAKKYVKLRFEPVRGLEAICAKFTHESQRQENH------FVEGLLYSLDEAVIMTGVMT 285
Query: 373 KQEGVVKVNNISRWYKPWFYKHVERFLRKPVNSDGFSGEEIVPVKDYLFRHNRAIFWVLE 552
+ K+N+I +YKPWF+KHVE +L+ N +G E +P++ Y RH R+IFW L+
Sbjct: 286 DEAEPSKLNSIGNYYKPWFFKHVENYLK--TNREGL---EYIPLRHYYHRHTRSIFWELQ 340
Query: 553 AIIPFCNNPLFRLFFGWMCPPKPAFLKFTTTPGIRAFTFVKQVFQDIVLPMTALEESIEL 732
IIPF NNP+FR FGWM PPK + LK T +R V QD+++PM L++++
Sbjct: 341 DIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQALHT 400
Query: 733 SEKLFNIYPILIYP 774
+ ++YPI + P
Sbjct: 401 FQNDIHVYPIWLCP 414
>sp|Q60HC5|DHC24_MACFA 24-dehydrocholesterol reductase precursor (3-beta-hydroxysterol
delta-24-reductase)
Length = 516
Score = 217 bits (552), Expect = 4e-56
Identities = 109/254 (42%), Positives = 160/254 (62%)
Frame = +1
Query: 13 VTTHSHKVGLFQETIVSYGLVLSDGSYINVTRENEHSDLFYCLPWSHGSLGFLVSLELKI 192
+ + SHK GLFQ +Y LVL+DGS++ T +E+SDLFY +PWS G+LGFLV+ E++I
Sbjct: 173 IESSSHKYGLFQHICTAYELVLADGSFVRCT-PSENSDLFYAVPWSCGTLGFLVAAEIRI 231
Query: 193 IPATKYIQLRYRPVVGLENYCNQIRQFSGAENAHNPDIPDFLEATIFTHDESVIIFGNFI 372
IPA KY++LR+ PV GLE C + S + H F+E +++ DE+VI+ G
Sbjct: 232 IPAKKYVKLRFEPVQGLEAICAKFTHESQRQENH------FVEGLLYSLDEAVIMTGVMT 285
Query: 373 KQEGVVKVNNISRWYKPWFYKHVERFLRKPVNSDGFSGEEIVPVKDYLFRHNRAIFWVLE 552
+ K+N+I +YKPWF+KHVE +L+ N +G E +P++ Y RH R+IFW L+
Sbjct: 286 DEVEPSKLNSIGNYYKPWFFKHVENYLK--TNREGL---EYIPLRHYYHRHTRSIFWELQ 340
Query: 553 AIIPFCNNPLFRLFFGWMCPPKPAFLKFTTTPGIRAFTFVKQVFQDIVLPMTALEESIEL 732
IIPF NNP+FR FGWM PPK + LK T +R V QD+++PM L++++
Sbjct: 341 DIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQALHT 400
Query: 733 SEKLFNIYPILIYP 774
+ ++YPI + P
Sbjct: 401 FQNDIHVYPIWLCP 414
>sp|P93472|DIM_PEA Cell elongation protein diminuto
Length = 567
Score = 202 bits (514), Expect = 1e-51
Identities = 98/263 (37%), Positives = 160/263 (60%), Gaps = 9/263 (3%)
Frame = +1
Query: 25 SHKVGLFQETIVSYGLVLSDGSYINVTRENEHSDLFYCLPWSHGSLGFLVSLELKIIPAT 204
SHK GLF +T+V++ ++L+DGS + T++NE+SDLFY +PWS G+LG LV+ E+K+IP
Sbjct: 173 SHKYGLFSDTVVAFEIILADGSLVKATKDNEYSDLFYAIPWSQGTLGLLVAAEVKLIPIK 232
Query: 205 KYIQLRYRPVVG-----LENYCNQIRQFSGAENAHNPDIPDFLEATIFTHDESVIIFGNF 369
+Y++L Y+PVVG + Y + G ++ ++ +PDF+E I++ +V + G +
Sbjct: 233 EYMKLTYKPVVGNLKDIAQAYSDSFAPRDGDQD-NDEKVPDFVETMIYSPTRAVCMTGRY 291
Query: 370 IKQEGVV----KVNNISRWYKPWFYKHVERFLRKPVNSDGFSGEEIVPVKDYLFRHNRAI 537
+E K+NN+ WYK WFY+H E L+K + E +P ++Y RH R +
Sbjct: 292 ASKEEAKKKGNKINNVGWWYKTWFYQHAETALKKGL------FVEYIPTREYYHRHTRCL 345
Query: 538 FWVLEAIIPFCNNPLFRLFFGWMCPPKPAFLKFTTTPGIRAFTFVKQVFQDIVLPMTALE 717
+W + I+PF + FR FGW+ PPK + LK T IR + V QD+++P+ +
Sbjct: 346 YWEGKLILPFGDQFSFRFLFGWLMPPKVSLLKATQGEAIRNYYHEMHVIQDMLVPLYKVG 405
Query: 718 ESIELSEKLFNIYPILIYPCKIF 786
+++E S++ IYPI + P K+F
Sbjct: 406 DALEWSDREMEIYPIWLCPHKLF 428
>sp|O17397|DIML_CAEEL Diminuto-like protein
Length = 525
Score = 189 bits (479), Expect = 1e-47
Identities = 105/278 (37%), Positives = 151/278 (54%), Gaps = 10/278 (3%)
Frame = +1
Query: 13 VTTHSHKVGLFQETIVSYGLVLSDGSYINVTREN--------EHSDLFYCLPWSHGSLGF 168
V + S K G+FQ Y +V+SDG NV ++ + + LF+ +PWS G++ F
Sbjct: 169 VESGSFKYGMFQHICTGYEVVMSDGELKNVYPDSAAKTEQAKQDNSLFFAIPWSQGTICF 228
Query: 169 LVSLELKIIPATKYIQLRYRPVVGLENYCNQIRQFSGAENAHNPDIPDFLEATIFTHDES 348
LV+ +KIIP KY++L Y+ L C Q+ + ++ N + DF+EA +F ++
Sbjct: 229 LVAATIKIIPCKKYVKLTYKKTETLSEMCEQLTE----DSDRNSENVDFVEALMFNKEKG 284
Query: 349 VIIFGNFIKQEGVVK--VNNISRWYKPWFYKHVERFLRKPVNSDGFSGEEIVPVKDYLFR 522
I+ G F VN I RWYK WFY HVE + K S E +P++DY R
Sbjct: 285 CIMLGEFSDGPDTHDEVVNPIGRWYKKWFYTHVEDLINKKHESI-----EYIPLRDYYHR 339
Query: 523 HNRAIFWVLEAIIPFCNNPLFRLFFGWMCPPKPAFLKFTTTPGIRAFTFVKQVFQDIVLP 702
H+++IFW L I+PF NN LFR WMCPPK AFLK TT +R V QD+++P
Sbjct: 340 HSKSIFWELRDIVPFGNNVLFRYLMAWMCPPKIAFLKATTPNVLRKLYDRSHVLQDMLVP 399
Query: 703 MTALEESIELSEKLFNIYPILIYPCKIFHRNPNKGLLR 816
+ LEE I+L K IYP+ + P F+ GL++
Sbjct: 400 LDKLEECIDLFHKEVEIYPMWLCP---FYLKSQPGLMK 434
>sp|Q39085|DIM_ARATH Cell elongation protein DIMINUTO (Cell elongation protein Dwarf1)
Length = 561
Score = 184 bits (466), Expect = 4e-46
Identities = 92/266 (34%), Positives = 150/266 (56%), Gaps = 5/266 (1%)
Frame = +1
Query: 25 SHKVGLFQETIVSYGLVLSDGSYINVTRENEHSDLFYCLPWSHGSLGFLVSLELKIIPAT 204
SH GLF +T+ +Y +VL+ G + TR+NE+SDL+Y +PWS G+LG LV+ E+++I
Sbjct: 174 SHIYGLFADTVEAYEIVLAGGELVRATRDNEYSDLYYAIPWSQGTLGLLVAAEIRLIKVK 233
Query: 205 KYIQLRYRPVVG-LENYCNQIRQFSGAENAHNPDIPDFLEATIFTHDESVIIFGNFIKQE 381
+Y++L Y PV G L+ ++ IPDF+E ++ E V++ G + +E
Sbjct: 234 EYMRLTYIPVKGDLQALAQGYIDSFAPKDGDKSKIPDFVEGMVYNPTEGVMMVGTYASKE 293
Query: 382 GVV----KVNNISRWYKPWFYKHVERFLRKPVNSDGFSGEEIVPVKDYLFRHNRAIFWVL 549
K+NN+ W+KPWFY+H + L+K E +P ++Y RH R ++W
Sbjct: 294 EAKKKGNKINNVGWWFKPWFYQHAQTALKKG------QFVEYIPTREYYHRHTRCLYWEG 347
Query: 550 EAIIPFCNNPLFRLFFGWMCPPKPAFLKFTTTPGIRAFTFVKQVFQDIVLPMTALEESIE 729
+ I+PF + FR GW+ PPK + LK T IR + V QD+++P+ + +++E
Sbjct: 348 KLILPFGDQFWFRYLLGWLMPPKVSLLKATQGEAIRNYYHDMHVIQDMLVPLYKVGDALE 407
Query: 730 LSEKLFNIYPILIYPCKIFHRNPNKG 807
+ +YPI + P K+F + P KG
Sbjct: 408 WVHREMEVYPIWLCPHKLF-KQPIKG 432
>sp|Q9HDX8|ALO_SCHPO D-arabinono-1,4-lactone oxidase (ALO) (L-galactono-gamma-lactone
oxidase)
Length = 461
Score = 34.3 bits (77), Expect = 0.49
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = +1
Query: 1 IRHEVTTHSHKVGLFQETIVSYGLVLSDGSYINVTRENEHSDLFYCLPWSHGSLGFLVSL 180
++H+V H K S ++L+DGS + +RE + D+F S G+LG +V +
Sbjct: 138 LQHQVLPHYIK---------SMRIMLADGSIVTCSRELQ-KDMFAAAQVSLGALGVIVDI 187
Query: 181 ELKIIPA 201
+ ++PA
Sbjct: 188 TISVVPA 194
>sp|Q9LTL8|C71BO_ARATH Cytochrome P450 71B24
Length = 498
Score = 32.3 bits (72), Expect = 1.9
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Frame = +1
Query: 616 KPAFLKFTTTPGIRAFTFVKQVFQDIV---LPMTALEE-SIELSEKLFNIYPILIY 771
K +FLKF +T +R+F ++++ D++ L AL++ S++LS+ LF + +I+
Sbjct: 123 KLSFLKFFSTTKVRSFRYIREEENDLMVKKLKEAALKKSSVDLSQTLFGLVGSIIF 178
>sp|Q9Z972|SYI_CHLPN Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS)
Length = 1043
Score = 32.3 bits (72), Expect = 1.9
Identities = 26/93 (27%), Positives = 44/93 (47%)
Frame = +1
Query: 280 AENAHNPDIPDFLEATIFTHDESVIIFGNFIKQEGVVKVNNISRWYKPWFYKHVERFLRK 459
A + +IP + I D+ +I F+K+EG + + + P+ ++ + K
Sbjct: 348 AHGSFTEEIPQYQGQYIKHADKEII---KFLKKEGRIFYHGTVKHRYPFCWRTDTPLIYK 404
Query: 460 PVNSDGFSGEEIVPVKDYLFRHNRAIFWVLEAI 558
VNS + E+I KD + R N +I WV E I
Sbjct: 405 AVNSWFVAVEKI---KDKMLRANSSIHWVPEHI 434
>sp|Q8K9B0|EX5C_BUCAP Exodeoxyribonuclease V gamma chain
Length = 1061
Score = 31.6 bits (70), Expect = 3.2
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = +1
Query: 625 FLKFTTTPGIRAFTFVKQVFQDIVLPMTALEESIELSEKLF---NIYPILIYPC--KIFH 789
F KF T I F K++F I+ ++ + +E+ +K+ +IY + I C KIFH
Sbjct: 184 FKKFKTLKKIEHIKFPKRIF--IIYSISLNPKYMEIFKKISTYTDIYFLSINACEKKIFH 241
Query: 790 RNPNKGLLRNPKKMQMTVNSNYGMFYDLEF 879
+ K + + M ++ Y FY L F
Sbjct: 242 ISFAKNYVVQKNNLLMNLSEKYEKFYFLFF 271
>sp|P43485|MCRA_STRLA Mitomycin radical oxidase
Length = 448
Score = 31.2 bits (69), Expect = 4.1
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Frame = +1
Query: 70 LVLSDGSYINVTRENEHSDLFYCLPWSHGSLGFLVSLELKIIPATK------YIQLRYRP 231
LV +DG +VT + DLF+ + + G +V +E+ + P T+ Y
Sbjct: 153 LVTADGRLRDVTAGTD-PDLFWAVRGGKDNFGLVVGMEVDLFPVTRLYGGGLYFAGEATA 211
Query: 232 VVGLENYCNQIRQF-----SGAENAHNPDIPDFLE 321
V L Y +R S HNPD+PD E
Sbjct: 212 EV-LHAYAEWVRHVPEEMASSVLLVHNPDLPDVPE 245
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,603,925
Number of Sequences: 369166
Number of extensions: 2186677
Number of successful extensions: 4961
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4943
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)