Planaria EST Database


DrC_02426

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02426
         (812 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q62377|U2AFM_MOUSE  U2 small nuclear ribonucleoprotein au...   119   1e-26
sp|Q64707|U2AFL_MOUSE  U2 small nuclear ribonucleoprotein au...   114   2e-25
sp|Q15696|U2AFM_HUMAN  U2 small nuclear ribonucleoprotein au...   112   2e-24
sp|Q15695|U2AFL_HUMAN  U2 small nuclear ribonucleoprotein au...   112   2e-24
sp|Q09176|U2AF1_SCHPO  Splicing factor U2AF 23 kDa subunit (...    84   5e-16
sp|Q01081|U2AF1_HUMAN  Splicing factor U2AF 35 kDa subunit (...    79   2e-14
sp|Q9D883|U2AF1_MOUSE  Splicing factor U2AF 35 kDa subunit (...    79   2e-14
sp|Q94535|U2AF1_DROME  Splicing factor U2af 38 kDa subunit (...    75   2e-13
sp|Q6CEW9|MRD1_YARLI  Multiple RNA-binding domain-containing...    40   0.006
sp|Q14498|RNPC2_HUMAN  RNA-binding region containing protein...    40   0.008
>sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit
           related-protein 2 (U2(RNU2) small nuclear RNA auxillary
           factor 1-like 2)
          Length = 462

 Score =  119 bits (297), Expect = 1e-26
 Identities = 54/122 (44%), Positives = 75/122 (61%)
 Frame = +2

Query: 35  DPDLGLEYDENELIGEYEEFYADVEKEFSSFGRVMTIRTCRNAMRHLRGNVYVQYRNIND 214
           DPD  LE+ E E+  ++ +FY DV  EF S G+V+  +   N   HLRGNVYVQY++  D
Sbjct: 224 DPDSSLEFSEEEIYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEED 283

Query: 215 AVYSFSQLNGRFYAGNRLSARFVTIDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESF 394
              +FS  NGR+YAG +L   F  +  W+ +ICGL+   +CP+G  CNF+HV  N    +
Sbjct: 284 CQAAFSVFNGRWYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHVFRNPNNEY 343

Query: 395 RD 400
           RD
Sbjct: 344 RD 345
>sp|Q64707|U2AFL_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit
           related-protein 1 (U2(RNU2) small nuclear RNA auxillary
           factor 1-like 1) (SP2)
          Length = 428

 Score =  114 bits (286), Expect = 2e-25
 Identities = 53/122 (43%), Positives = 72/122 (59%)
 Frame = +2

Query: 35  DPDLGLEYDENELIGEYEEFYADVEKEFSSFGRVMTIRTCRNAMRHLRGNVYVQYRNIND 214
           D D  LEY E E   ++ +FY DV  EF + G+V+  +   N   HLRGNVYVQY++  +
Sbjct: 211 DSDANLEYSEEETYQQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEE 270

Query: 215 AVYSFSQLNGRFYAGNRLSARFVTIDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESF 394
              + S  NGR+YAG +L   F  +  W+ +ICGL+   KCPKG  CNF+HV  N    F
Sbjct: 271 CQAALSLFNGRWYAGRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHVFRNPNNEF 330

Query: 395 RD 400
           R+
Sbjct: 331 RE 332
>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit
           related-protein 2 (U2(RNU2) small nuclear RNA auxillary
           factor 1-like 2)
          Length = 482

 Score =  112 bits (279), Expect = 2e-24
 Identities = 51/120 (42%), Positives = 71/120 (59%)
 Frame = +2

Query: 35  DPDLGLEYDENELIGEYEEFYADVEKEFSSFGRVMTIRTCRNAMRHLRGNVYVQYRNIND 214
           DPD  LEY E E   ++ +FY DV  EF + G+V+  +   N   HLRGNVYVQY++  +
Sbjct: 220 DPDASLEYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEE 279

Query: 215 AVYSFSQLNGRFYAGNRLSARFVTIDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESF 394
              + S  NGR+YAG +L   F  +  W+ +ICGL+   +CP+G  CNF+HV  N    F
Sbjct: 280 CQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEF 339
>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit
           related-protein 1 (U2(RNU2) small nuclear RNA auxillary
           factor 1-like 1)
          Length = 479

 Score =  112 bits (279), Expect = 2e-24
 Identities = 51/120 (42%), Positives = 71/120 (59%)
 Frame = +2

Query: 35  DPDLGLEYDENELIGEYEEFYADVEKEFSSFGRVMTIRTCRNAMRHLRGNVYVQYRNIND 214
           DPD  LEY E E   ++ +FY DV  EF + G+V+  +   N   HLRGNVYVQY++  +
Sbjct: 225 DPDASLEYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEE 284

Query: 215 AVYSFSQLNGRFYAGNRLSARFVTIDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESF 394
              + S  NGR+YAG +L   F  +  W+ +ICGL+   +CP+G  CNF+HV  N    F
Sbjct: 285 CQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEF 344
>sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit (U2 auxiliary factor 23 kDa
           subunit) (U2 snRNP auxiliary factor small subunit)
           (U2AF23)
          Length = 216

 Score = 84.0 bits (206), Expect = 5e-16
 Identities = 40/119 (33%), Positives = 64/119 (53%)
 Frame = +2

Query: 47  GLEYDENELIGEYEEFYADVEKEFSSFGRVMTIRTCRNAMRHLRGNVYVQYRNINDAVYS 226
           G ++ + EL  +++ FY D+  EFS +G V  +  C N   HL GNVYV+++    A  +
Sbjct: 61  GKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNA 120

Query: 227 FSQLNGRFYAGNRLSARFVTIDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESFRDL 403
              LN R+Y+   + A    +  +RE+ C  +   +C +GG+CNFMH      +  RDL
Sbjct: 121 IDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQLLRDL 179
>sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa
           subunit) (U2 snRNP auxiliary factor small subunit)
          Length = 240

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
 Frame = +2

Query: 68  ELIGEYEEFYADVEKEFSS-FGRVMTIRTCRNAMRHLRGNVYVQYRNINDAVYSFSQLNG 244
           E+   Y+EF+ +V  E    +G V  +  C N   HL GNVYV++R   DA  +   LN 
Sbjct: 73  EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132

Query: 245 RFYAGNRLSARFVTIDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESFRDL 403
           R++ G  + A    +  +RE+ C  Y  G+C +GG CNFMH+     E  R+L
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 185
>sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa
           subunit) (U2 snRNP auxiliary factor small subunit)
          Length = 239

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
 Frame = +2

Query: 68  ELIGEYEEFYADVEKEFSS-FGRVMTIRTCRNAMRHLRGNVYVQYRNINDAVYSFSQLNG 244
           E+   Y+EF+ +V  E    +G V  +  C N   HL GNVYV++R   DA  +   LN 
Sbjct: 73  EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132

Query: 245 RFYAGNRLSARFVTIDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESFRDL 403
           R++ G  + A    +  +RE+ C  Y  G+C +GG CNFMH+     E  R+L
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 185
>sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit (U2 auxiliary factor 38 kDa
           subunit) (U2 snRNP auxiliary factor small subunit)
          Length = 264

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
 Frame = +2

Query: 62  ENELIGEYEEFYADVEKEFSS-FGRVMTIRTCRNAMRHLRGNVYVQYRNINDAVYSFSQL 238
           + E+   Y+ F+ DV  E    +G +  +  C N   HL GNVY+++RN  DA  + + L
Sbjct: 73  DEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDL 132

Query: 239 NGRFYAGNRLSARFVTIDSWRESICGLYFRGKCPKGGICNFMHV 370
           N R++ G  + +    +  +RE+ C  Y  G+C + G CNFMH+
Sbjct: 133 NNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHL 176
>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1
          Length = 828

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +2

Query: 83  YEEFYADVEKEFSSFGRVMTIRTCRNAMRHLRGNVYVQYRNINDAVYSFSQLNGRFYAGN 262
           +E    DV+K F +FG + T+R  +      RG  + +Y +  +A ++ S L G    G 
Sbjct: 712 FEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSALQGTHLLGR 771

Query: 263 RLSARFVTIDS 295
           RL  ++   D+
Sbjct: 772 RLVLQYAQADA 782
>sp|Q14498|RNPC2_HUMAN RNA-binding region containing protein 2 (Hepatocellular carcinoma
           protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 40.0 bits (92), Expect = 0.008
 Identities = 24/77 (31%), Positives = 45/77 (58%)
 Frame = +2

Query: 68  ELIGEYEEFYADVEKEFSSFGRVMTIRTCRNAMRHLRGNVYVQYRNINDAVYSFSQLNGR 247
           E +G   E   DV +E +  G V+ I   +N+ +   GNVYV+  +I  A+ + + L+GR
Sbjct: 438 EEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQ---GNVYVKCPSIAAAIAAVNALHGR 494

Query: 248 FYAGNRLSARFVTIDSW 298
           ++AG  ++A +V + ++
Sbjct: 495 WFAGKMITAAYVPLPTY 511
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,986,744
Number of Sequences: 369166
Number of extensions: 1693624
Number of successful extensions: 4789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4782
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)