Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02425
(325 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q4UKK3|DAPD_RICFE 2,3,4,5-tetrahydropyridine-2,6-dicarbo... 30 1.7
sp|Q92J26|DAPD_RICCN 2,3,4,5-tetrahydropyridine-2,6-dicarbo... 30 2.2
sp|P07298|VNCS_PAVHB Noncapsid protein NS-1 (Nonstructural ... 29 3.8
>sp|Q4UKK3|DAPD_RICFE 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
(Tetrahydrodipicolinate N-succinyltransferase) (THP
succinyltransferase) (Tetrahydropicolinate succinylase)
Length = 274
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 53 DSVNYCTIGFSEKTCSNWSSNV*IKKGISFY*IKKKTRLYHS 178
+S+N TI EK ++W N +KK I Y I +++LY++
Sbjct: 37 ESLNQGTIRVCEKKENSWEVNEWVKKAILLYFITTESQLYNN 78
>sp|Q92J26|DAPD_RICCN 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
(Tetrahydrodipicolinate N-succinyltransferase) (THP
succinyltransferase) (Tetrahydropicolinate succinylase)
Length = 274
Score = 29.6 bits (65), Expect = 2.2
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 53 DSVNYCTIGFSEKTCSNWSSNV*IKKGISFY*IKKKTRLYHS 178
+S+N TI EK ++W N +KK I Y I +++LY++
Sbjct: 37 ESLNQGTIRVCEKQENSWHVNEWVKKAILLYFITTESQLYNN 78
>sp|P07298|VNCS_PAVHB Noncapsid protein NS-1 (Nonstructural protein NS1) (NCVP1)
Length = 671
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 204 KGNMCSDDKEFLQNWL*NDIYF*IKWCFIEVDI*IQACKS 323
KG D ++F++N+L I + WC +D I C S
Sbjct: 127 KGKYFRDGEQFIENYLMKKIPLNVVWCVTNIDGYIDTCIS 166
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,039,937
Number of Sequences: 369166
Number of extensions: 580405
Number of successful extensions: 1159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 68,354,980
effective HSP length: 76
effective length of database: 54,315,120
effective search space used: 1683768720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)