Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02424
(364 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q00383|YCF1_EPIVI Hypothetical 208 kDa protein ycf1 (ORF... 32 0.60
sp|Q86C56|GCY31_CAEEL Soluble guanylate cyclase gcy-31 28 5.1
sp|Q821L7|ENGA_CHLCV GTP-binding protein engA 28 5.1
sp|Q9Z762|ENGA_CHLPN GTP-binding protein engA 28 6.6
sp|Q99MU3|DSRAD_MOUSE Double-stranded RNA-specific adenosin... 28 8.7
sp|P55266|DSRAD_RAT Double-stranded RNA-specific adenosine ... 28 8.7
>sp|Q00383|YCF1_EPIVI Hypothetical 208 kDa protein ycf1 (ORF 1738)
Length = 1738
Score = 31.6 bits (70), Expect = 0.60
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 8/123 (6%)
Frame = +3
Query: 9 NFKEQDICKE*TMLVNTITMVSKPLQQIIDD*NKVCLNLSLQNIMASGCQMSLEMN---- 176
+FKE D+ + + ++N +SK +Q+ + + NI+ C+ + N
Sbjct: 998 SFKEMDLADQTSKILNQTERISKDKKQV---------TIKIFNIL---CENKINYNTKKR 1045
Query: 177 LICWIILIFKRFRAF**IYVQILK*NKFCILRYIVNF----INI*S*I*IIVVKLIPNVL 344
L W ILI K R I +++L KF I R NF INI I +KLI ++
Sbjct: 1046 LEKWKILIRKSER----IIIKLLFFFKFFIERIYTNFFLSSINILKINKEIFIKLIKKII 1101
Query: 345 NKN 353
+K+
Sbjct: 1102 DKS 1104
>sp|Q86C56|GCY31_CAEEL Soluble guanylate cyclase gcy-31
Length = 702
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 100 SSIICCSGFETIVIVFTSIVYSLQISCSL 14
S++ CC F+++ I+FT IV ++ SL
Sbjct: 423 SAVACCERFDSVTILFTDIVEFTKMCSSL 451
>sp|Q821L7|ENGA_CHLCV GTP-binding protein engA
Length = 474
Score = 28.5 bits (62), Expect = 5.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 62 YNGFKAAATDYRRLKQSLFESLTTKHYGEWLPNVIRNEFNL 184
Y AT ++ L +SL TKHY +L N +++ FNL
Sbjct: 417 YYAIHKTATPFQFLLFINAKSLLTKHYECYLRNTLKSSFNL 457
>sp|Q9Z762|ENGA_CHLPN GTP-binding protein engA
Length = 487
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 119 ESLTTKHYGEWLPNVIRNEFNL 184
+SL TKHY +L N +++ FNL
Sbjct: 449 KSLLTKHYEYYLKNTLKSSFNL 470
>sp|Q99MU3|DSRAD_MOUSE Double-stranded RNA-specific adenosine deaminase (DRADA) (RNA
adenosine deaminase 1)
Length = 1178
Score = 27.7 bits (60), Expect = 8.7
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 8 EFQRTRYLQGINDACKYNYNGFKAAATDYRRLKQSLFESLTTKHYGEWL 154
+F++ + D + +Y K AA DY K +SL YG W+
Sbjct: 1113 QFKKLCSFRARRDLLQLSYGEAKKAARDYDLAKNYFKKSLRDMGYGNWI 1161
>sp|P55266|DSRAD_RAT Double-stranded RNA-specific adenosine deaminase (DRADA)
Length = 1175
Score = 27.7 bits (60), Expect = 8.7
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 8 EFQRTRYLQGINDACKYNYNGFKAAATDYRRLKQSLFESLTTKHYGEWL 154
+F++ + D + +Y K AA DY K +SL YG W+
Sbjct: 1110 QFKKLCSFRARRDLLQLSYGEAKKAARDYDLAKNYFKKSLRDMGYGNWI 1158
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,607,678
Number of Sequences: 369166
Number of extensions: 621452
Number of successful extensions: 1238
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)