Planaria EST Database


DrC_02418

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02418
         (823 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VI36|PAXI_MOUSE  Paxillin                                     99   1e-20
sp|P49023|PAXI_HUMAN  Paxillin                                     98   3e-20
sp|P49024|PAXI_CHICK  Paxillin                                     97   4e-20
sp|Q62920|PDLI5_RAT  PDZ and LIM domain protein 5 (Enigma ho...    97   4e-20
sp|O60711|LPXN_HUMAN  Leupaxin                                     97   7e-20
sp|Q96HC4|PDLI5_HUMAN  PDZ and LIM domain protein 5 (Enigma ...    96   9e-20
sp|Q8CI51|PDLI5_MOUSE  PDZ and LIM domain protein 5 (Enigma ...    96   2e-19
sp|Q09476|YP96_CAEEL  Hypothetical protein C28H8.6 in chromo...    85   2e-16
sp|Q9UGP4|LIMD1_HUMAN  LIM domains-containing protein 1            84   6e-16
sp|Q9QXD8|LIMD1_MOUSE  LIM domains-containing protein 1            82   1e-15
>sp|Q8VI36|PAXI_MOUSE Paxillin
          Length = 591

 Score = 99.0 bits (245), Expect = 1e-20
 Identities = 51/151 (33%), Positives = 73/151 (48%)
 Frame = +2

Query: 260 ICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVAS 439
           +C  CK  I G  + A  K +   HF C+ C++ I    F E ++G  YC +D+ +  + 
Sbjct: 357 VCGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFE-RDGQPYCEKDYHSLFSP 415

Query: 440 RCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTF 619
           RCY C  PI+++ + AL + WHP  F C  C        FH K+       YC KDY   
Sbjct: 416 RCYYCNGPILDKVVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGK----AYCRKDYFDM 471

Query: 620 YEIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
           +  KC GC  AI   + Y+      +H ECF
Sbjct: 472 FAPKCGGCARAI--LENYISALNTLWHPECF 500

 Score = 80.5 bits (197), Expect = 5e-15
 Identities = 45/150 (30%), Positives = 65/150 (43%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           C+ C   I+   + A ++ +   HF C+ C     G +    K+G  YC +D+    A +
Sbjct: 417 CYYCNGPILDKVVTALDRTWHPEHFFCAQCGA-FFGPEGFHEKDGKAYCRKDYFDMFAPK 475

Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
           C  C + I+E  I AL   WHP CF+C  C  P   G F   E + Q   YCE  Y    
Sbjct: 476 CGGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFF--EHDGQP--YCEVHYHERR 531

Query: 623 EIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
              C GC+  I    + +      +H E F
Sbjct: 532 GSLCSGCQKPITG--RCITAMAKKFHPEHF 559

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 37/113 (32%), Positives = 54/113 (47%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           C  C   I+ +YI A N ++    F C  C  P     F E  +G  YC   +     S 
Sbjct: 476 CGGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFFE-HDGQPYCEVHYHERRGSL 534

Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCE 601
           C  C +PI  + I A+ K +HP  F+C  C K + +G F  KE+N++   YC+
Sbjct: 535 CSGCQKPITGRCITAMAKKFHPEHFVCAFCLKQLNKGTF--KEQNDKP--YCQ 583

 Score = 33.5 bits (75), Expect = 0.72
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +2

Query: 245 DSNSAICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDF 421
           +   ++C  C+  I G  I A  K +   HF C+FC K +    F E  +   YC   F
Sbjct: 529 ERRGSLCSGCQKPITGRCITAMAKKFHPEHFVCAFCLKQLNKGTFKEQNDKP-YCQSCF 586
>sp|P49023|PAXI_HUMAN Paxillin
          Length = 591

 Score = 97.8 bits (242), Expect = 3e-20
 Identities = 51/151 (33%), Positives = 72/151 (47%)
 Frame = +2

Query: 260 ICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVAS 439
           +C  CK  I G  + A  K +   HF C+ C++ I    F E ++G  YC +D+    + 
Sbjct: 357 VCGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFE-RDGQPYCEKDYHNLFSP 415

Query: 440 RCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTF 619
           RCY C  PI+++ + AL + WHP  F C  C        FH K+       YC KDY   
Sbjct: 416 RCYYCNGPILDKVVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGK----AYCRKDYFDM 471

Query: 620 YEIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
           +  KC GC  AI   + Y+      +H ECF
Sbjct: 472 FAPKCGGCARAI--LENYISALNTLWHPECF 500

 Score = 80.5 bits (197), Expect = 5e-15
 Identities = 45/150 (30%), Positives = 65/150 (43%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           C+ C   I+   + A ++ +   HF C+ C     G +    K+G  YC +D+    A +
Sbjct: 417 CYYCNGPILDKVVTALDRTWHPEHFFCAQCGA-FFGPEGFHEKDGKAYCRKDYFDMFAPK 475

Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
           C  C + I+E  I AL   WHP CF+C  C  P   G F   E + Q   YCE  Y    
Sbjct: 476 CGGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFF--EHDGQP--YCEVHYHERR 531

Query: 623 EIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
              C GC+  I    + +      +H E F
Sbjct: 532 GSLCSGCQKPITG--RCITAMAKKFHPEHF 559

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 37/113 (32%), Positives = 54/113 (47%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           C  C   I+ +YI A N ++    F C  C  P     F E  +G  YC   +     S 
Sbjct: 476 CGGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFFE-HDGQPYCEVHYHERRGSL 534

Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCE 601
           C  C +PI  + I A+ K +HP  F+C  C K + +G F  KE+N++   YC+
Sbjct: 535 CSGCQKPITGRCITAMAKKFHPEHFVCAFCLKQLNKGTF--KEQNDKP--YCQ 583

 Score = 33.5 bits (75), Expect = 0.72
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +2

Query: 245 DSNSAICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDF 421
           +   ++C  C+  I G  I A  K +   HF C+FC K +    F E  +   YC   F
Sbjct: 529 ERRGSLCSGCQKPITGRCITAMAKKFHPEHFVCAFCLKQLNKGTFKEQNDKP-YCQNCF 586
>sp|P49024|PAXI_CHICK Paxillin
          Length = 559

 Score = 97.4 bits (241), Expect = 4e-20
 Identities = 51/151 (33%), Positives = 72/151 (47%)
 Frame = +2

Query: 260 ICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVAS 439
           +C  CK  I G  + A  K +   HF C+ C++ I    F E ++G  YC +D+    + 
Sbjct: 325 VCGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFE-RDGQPYCEKDYHNLFSP 383

Query: 440 RCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTF 619
           RCY C  PI+++ + AL + WHP  F C  C        FH K+       YC KDY   
Sbjct: 384 RCYYCNGPILDKVVTALDRTWHPEHFFCAQCGVFFGPEGFHEKDGK----AYCRKDYFDM 439

Query: 620 YEIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
           +  KC GC  AI   + Y+      +H ECF
Sbjct: 440 FAPKCGGCARAI--LENYISALNTLWHPECF 468

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 42/131 (32%), Positives = 59/131 (45%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           C+ C   I+   + A ++ +   HF C+ C     G +    K+G  YC +D+    A +
Sbjct: 385 CYYCNGPILDKVVTALDRTWHPEHFFCAQCGV-FFGPEGFHEKDGKAYCRKDYFDMFAPK 443

Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
           C  C + I+E  I AL   WHP CF+C  C  P   G F   E + Q   YCE  Y    
Sbjct: 444 CGGCARAILENYISALNTLWHPECFVCRECFTPFINGSFF--EHDGQP--YCEVHYHERR 499

Query: 623 EIKCFGCKLAI 655
              C GC+  I
Sbjct: 500 GSLCSGCQKPI 510

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 38/113 (33%), Positives = 55/113 (48%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           C  C   I+ +YI A N ++    F C  C  P     F E  +G  YC   +     S 
Sbjct: 444 CGGCARAILENYISALNTLWHPECFVCRECFTPFINGSFFE-HDGQPYCEVHYHERRGSL 502

Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCE 601
           C  C +PI  + I A+GK +HP  F+C  C K + +G F  KE+N++   YC+
Sbjct: 503 CSGCQKPITGRCITAMGKKFHPEHFVCAFCLKQLNKGTF--KEQNDKP--YCQ 551

 Score = 34.3 bits (77), Expect = 0.42
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +2

Query: 245 DSNSAICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDF 421
           +   ++C  C+  I G  I A  K +   HF C+FC K +    F E  +   YC   F
Sbjct: 497 ERRGSLCSGCQKPITGRCITAMGKKFHPEHFVCAFCLKQLNKGTFKEQNDKP-YCQNCF 554
>sp|Q62920|PDLI5_RAT PDZ and LIM domain protein 5 (Enigma homolog) (Enigma-like PDZ and
           LIM domains protein)
          Length = 591

 Score = 97.4 bits (241), Expect = 4e-20
 Identities = 51/157 (32%), Positives = 77/157 (49%)
 Frame = +2

Query: 242 ADSNSAICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDF 421
           A   + +C  C   I G ++ A  K +    F C+ CK  +    F+E K G LYC   +
Sbjct: 408 AGKRTPMCAHCNQAIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEK-GALYCELCY 466

Query: 422 TANVASRCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCE 601
               A  C +C + I+ + I AL + WH SCF+C  C KPI    FH+++       YCE
Sbjct: 467 EKFFAPECGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEP----YCE 522

Query: 602 KDYKTFYEIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
            DY   +   C GC+  I++ D +L+   + +H  CF
Sbjct: 523 TDYYALFGTICRGCEFPIEAGDMFLEALGSTWHDTCF 559

 Score = 59.7 bits (143), Expect = 9e-09
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           C  C+ +I+G  I A  + +  + F C  C KPI+   F   ++G  YC  D+ A   + 
Sbjct: 474 CGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVF-HLEDGEPYCETDYYALFGTI 532

Query: 443 CYQCLQPII--EQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEE 574
           C  C  PI   +  + ALG  WH +CF+C+ C + +    F  K++
Sbjct: 533 CRGCEFPIEAGDMFLEALGSTWHDTCFVCSVCCESLEGQTFFSKKD 578
>sp|O60711|LPXN_HUMAN Leupaxin
          Length = 386

 Score = 96.7 bits (239), Expect = 7e-20
 Identities = 48/150 (32%), Positives = 72/150 (48%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           C  C+  I G  I A  + +   HF C+ CK+ I  + F E + G  YC  D+    + R
Sbjct: 152 CASCQKPIAGKVIHALGQSWHPEHFVCTHCKEEIGSSPFFE-RSGLAYCPNDYHQLFSPR 210

Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
           C  C  PI+++ + A+ + WHP  F C+HC +      FH K++      YC KD+   +
Sbjct: 211 CAYCAAPILDKVLTAMNQTWHPEHFFCSHCGEVFGAEGFHEKDKKP----YCRKDFLAMF 266

Query: 623 EIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
             KC GC   +   + YL      +H ECF
Sbjct: 267 SPKCGGCNRPV--LENYLSAMDTVWHPECF 294

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 39/127 (30%), Positives = 58/127 (45%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           C  C   I+   + A N+ +   HF CS C + + G +    K+   YC +DF A  + +
Sbjct: 211 CAYCAAPILDKVLTAMNQTWHPEHFFCSHCGE-VFGAEGFHEKDKKPYCRKDFLAMFSPK 269

Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
           C  C +P++E  + A+   WHP CF+C  C      G F   E + + F  CE  Y    
Sbjct: 270 CGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFF--ELDGRPF--CELHYHHRR 325

Query: 623 EIKCFGC 643
              C GC
Sbjct: 326 GTLCHGC 332

 Score = 53.5 bits (127), Expect = 7e-07
 Identities = 31/122 (25%), Positives = 57/122 (46%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           C  C   ++ +Y+ A + ++    F C  C        F E  +G  +C   +     + 
Sbjct: 270 CGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFEL-DGRPFCELHYHHRRGTL 328

Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
           C+ C QPI  + I A+G  +HP  F+C  C   + +G F  +E+N++T  YC+  +   +
Sbjct: 329 CHGCGQPITGRCISAMGYKFHPEHFVCAFCLTQLSKGIF--REQNDKT--YCQPCFNKLF 384

Query: 623 EI 628
            +
Sbjct: 385 PL 386
>sp|Q96HC4|PDLI5_HUMAN PDZ and LIM domain protein 5 (Enigma homolog) (Enigma-like PDZ and
           LIM domains protein)
          Length = 596

 Score = 96.3 bits (238), Expect = 9e-20
 Identities = 51/157 (32%), Positives = 76/157 (48%)
 Frame = +2

Query: 242 ADSNSAICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDF 421
           A   + +C  C   I G ++ A  K +    F C+ CK  +    F+E K G LYC   +
Sbjct: 413 AGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEK-GALYCELCY 471

Query: 422 TANVASRCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCE 601
               A  C +C + I+ + I AL + WH SCF+C  C KPI    FH+++       YCE
Sbjct: 472 EKFFAPECGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEP----YCE 527

Query: 602 KDYKTFYEIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
            DY   +   C GC+  I++ D +L+     +H  CF
Sbjct: 528 TDYYALFGTICHGCEFPIEAGDMFLEALGYTWHDTCF 564

 Score = 60.5 bits (145), Expect = 6e-09
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           C  C+ +I+G  I A  + +  + F C  C KPI+   F   ++G  YC  D+ A   + 
Sbjct: 479 CGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVF-HLEDGEPYCETDYYALFGTI 537

Query: 443 CYQCLQPII--EQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEE 574
           C+ C  PI   +  + ALG  WH +CF+C+ C + +    F  K++
Sbjct: 538 CHGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKD 583
>sp|Q8CI51|PDLI5_MOUSE PDZ and LIM domain protein 5 (Enigma homolog) (Enigma-like PDZ and
           LIM domains protein)
          Length = 591

 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 51/157 (32%), Positives = 76/157 (48%)
 Frame = +2

Query: 242 ADSNSAICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDF 421
           A   + +C  C   I G ++ A  K +    F C+ CK  +    F+E K G LYC   +
Sbjct: 408 AGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEK-GALYCELCY 466

Query: 422 TANVASRCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCE 601
               A  C +C + I+ + I AL + WH SCF+C  C KPI    FH+++       YCE
Sbjct: 467 EKFFAPECGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEP----YCE 522

Query: 602 KDYKTFYEIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
            DY   +   C GC+  I++ D +L+     +H  CF
Sbjct: 523 TDYYALFGTICRGCEFPIEAGDMFLEALGYTWHDTCF 559

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           C  C+ +I+G  I A  + +  + F C  C KPI+   F   ++G  YC  D+ A   + 
Sbjct: 474 CGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVF-HLEDGEPYCETDYYALFGTI 532

Query: 443 CYQCLQPII--EQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEE 574
           C  C  PI   +  + ALG  WH +CF+C+ C + +    F  K++
Sbjct: 533 CRGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKD 578
>sp|Q09476|YP96_CAEEL Hypothetical protein C28H8.6 in chromosome III
          Length = 256

 Score = 85.1 bits (209), Expect = 2e-16
 Identities = 44/150 (29%), Positives = 74/150 (49%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           C  C   IIG  + A  K++   H+ C  C   +    F E + G  +C ED+    + +
Sbjct: 19  CAACGKPIIGQVVIALGKMWHPEHYTCCECGAELGQRPFFE-RNGRAFCEEDYHNQFSPK 77

Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
           C  C + I ++ +  + K +H  CF C  C++P  +  FH  E+N QT  YC++D+   +
Sbjct: 78  CQGCHRAITDRCVSVMNKNFHIECFTCAECNQPFGEDGFH--EKNGQT--YCKRDFFRLF 133

Query: 623 EIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
             KC GC   I S+  ++     ++H +CF
Sbjct: 134 APKCNGCSQPITSN--FITALGTHWHPDCF 161

 Score = 73.2 bits (178), Expect = 8e-13
 Identities = 48/151 (31%), Positives = 61/151 (40%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           C  C   I    +   NK +    F C+ C +P     F E K G  YC  DF    A +
Sbjct: 78  CQGCHRAITDRCVSVMNKNFHIECFTCAECNQPFGEDGFHE-KNGQTYCKRDFFRLFAPK 136

Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
           C  C QPI    I ALG  WHP CF+C HC        F   E N      CE+ Y    
Sbjct: 137 CNGCSQPITSNFITALGTHWHPDCFVCQHCGVSFNGASFF--EHNGAPL--CERHYHESR 192

Query: 623 EIKCFGCKLAIDSDDKYLQVGTNNYHVECFK 715
              C  C+ AI+   + +      +H E F+
Sbjct: 193 GSICSQCRGAING--RCVAAMGRKFHPEHFR 221

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 34/122 (27%), Positives = 53/122 (43%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           C  C   I  ++I A    +  + F C  C     G  F E   G   C   +  +  S 
Sbjct: 137 CNGCSQPITSNFITALGTHWHPDCFVCQHCGVSFNGASFFE-HNGAPLCERHYHESRGSI 195

Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
           C QC   I  + + A+G+ +HP  F C++C+  + +G F  KE + + F  C K Y   Y
Sbjct: 196 CSQCRGAINGRCVAAMGRKFHPEHFRCSYCNHQLTKGTF--KEVDRRPF--CHKCYNNTY 251

Query: 623 EI 628
            +
Sbjct: 252 AL 253

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 245 DSNSAICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPI-KGT 373
           +S  +IC  C+  I G  + A  + +   HF CS+C   + KGT
Sbjct: 190 ESRGSICSQCRGAINGRCVAAMGRKFHPEHFRCSYCNHQLTKGT 233
>sp|Q9UGP4|LIMD1_HUMAN LIM domains-containing protein 1
          Length = 676

 Score = 83.6 bits (205), Expect = 6e-16
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
 Frame = +2

Query: 263 CFVCKDRIIGS--YIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTAN-- 430
           C  C   + G+    +A   +Y    F C+ C + ++G  F     G ++C EDF  +  
Sbjct: 472 CVKCSKGVFGAGQACQAMGNLYHDTCFTCAACSRKLRGKAFYFVN-GKVFCEEDFLYSGF 530

Query: 431 --VASRCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEK 604
              A RC+ C   I++  + ALGK +HP CF C  C++ +    F +  EN    IYC +
Sbjct: 531 QQSADRCFLCGHLIMDMILQALGKSYHPGCFRCVICNECLDGVPFTVDSENK---IYCVR 587

Query: 605 DYKTFYEIKCFGCKLAI---DSDDKYLQVGT--NNYHVECF 712
           DY      KC  C L I   +  D+ ++V +   +YHVEC+
Sbjct: 588 DYHKVLAPKCAACGLPILPPEGSDETIRVVSMDRDYHVECY 628

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           CF+C   I+   ++A  K Y    F C  C + + G  F    E  +YC+ D+   +A +
Sbjct: 537 CFLCGHLIMDMILQALGKSYHPGCFRCVICNECLDGVPFTVDSENKIYCVRDYHKVLAPK 596

Query: 443 CYQCLQPIIEQQ-------IMALGKCWHPSCFLCNHC 532
           C  C  PI+  +       ++++ + +H  C+ C  C
Sbjct: 597 CAACGLPILPPEGSDETIRVVSMDRDYHVECYHCEDC 633
>sp|Q9QXD8|LIMD1_MOUSE LIM domains-containing protein 1
          Length = 668

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
 Frame = +2

Query: 263 CFVCKDRIIGS--YIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTAN-- 430
           C  C   + G+    +A   +Y    F C+ C + ++G  F     G ++C EDF  +  
Sbjct: 464 CVKCSKGVFGAGQACQAMGDLYHDACFTCAACSRKLRGKAFYFVN-GKVFCEEDFLYSGF 522

Query: 431 --VASRCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEK 604
              A RC+ C   I++  + ALGK +HP CF C  C++ +    F +  EN    IYC +
Sbjct: 523 QQSADRCFLCGHLIMDMILQALGKSYHPGCFRCVICNECLDGVPFTVDSENK---IYCVR 579

Query: 605 DYKTFYEIKCFGCKLAI---DSDDKYLQVGT--NNYHVECF 712
           DY      KC  C L I   +  D+ ++V +   +YHVEC+
Sbjct: 580 DYHKVLAPKCAACGLPILPPEGSDETIRVVSMDRDYHVECY 620

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
 Frame = +2

Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
           CF+C   I+   ++A  K Y    F C  C + + G  F    E  +YC+ D+   +A +
Sbjct: 529 CFLCGHLIMDMILQALGKSYHPGCFRCVICNECLDGVPFTVDSENKIYCVRDYHKVLAPK 588

Query: 443 CYQCLQPIIEQQ-------IMALGKCWHPSCFLCNHC 532
           C  C  PI+  +       ++++ + +H  C+ C  C
Sbjct: 589 CAACGLPILPPEGSDETIRVVSMDRDYHVECYHCEDC 625
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,968,743
Number of Sequences: 369166
Number of extensions: 1462725
Number of successful extensions: 4251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4012
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)