Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02418
(823 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8VI36|PAXI_MOUSE Paxillin 99 1e-20
sp|P49023|PAXI_HUMAN Paxillin 98 3e-20
sp|P49024|PAXI_CHICK Paxillin 97 4e-20
sp|Q62920|PDLI5_RAT PDZ and LIM domain protein 5 (Enigma ho... 97 4e-20
sp|O60711|LPXN_HUMAN Leupaxin 97 7e-20
sp|Q96HC4|PDLI5_HUMAN PDZ and LIM domain protein 5 (Enigma ... 96 9e-20
sp|Q8CI51|PDLI5_MOUSE PDZ and LIM domain protein 5 (Enigma ... 96 2e-19
sp|Q09476|YP96_CAEEL Hypothetical protein C28H8.6 in chromo... 85 2e-16
sp|Q9UGP4|LIMD1_HUMAN LIM domains-containing protein 1 84 6e-16
sp|Q9QXD8|LIMD1_MOUSE LIM domains-containing protein 1 82 1e-15
>sp|Q8VI36|PAXI_MOUSE Paxillin
Length = 591
Score = 99.0 bits (245), Expect = 1e-20
Identities = 51/151 (33%), Positives = 73/151 (48%)
Frame = +2
Query: 260 ICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVAS 439
+C CK I G + A K + HF C+ C++ I F E ++G YC +D+ + +
Sbjct: 357 VCGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFE-RDGQPYCEKDYHSLFSP 415
Query: 440 RCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTF 619
RCY C PI+++ + AL + WHP F C C FH K+ YC KDY
Sbjct: 416 RCYYCNGPILDKVVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGK----AYCRKDYFDM 471
Query: 620 YEIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
+ KC GC AI + Y+ +H ECF
Sbjct: 472 FAPKCGGCARAI--LENYISALNTLWHPECF 500
Score = 80.5 bits (197), Expect = 5e-15
Identities = 45/150 (30%), Positives = 65/150 (43%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
C+ C I+ + A ++ + HF C+ C G + K+G YC +D+ A +
Sbjct: 417 CYYCNGPILDKVVTALDRTWHPEHFFCAQCGA-FFGPEGFHEKDGKAYCRKDYFDMFAPK 475
Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
C C + I+E I AL WHP CF+C C P G F E + Q YCE Y
Sbjct: 476 CGGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFF--EHDGQP--YCEVHYHERR 531
Query: 623 EIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
C GC+ I + + +H E F
Sbjct: 532 GSLCSGCQKPITG--RCITAMAKKFHPEHF 559
Score = 60.8 bits (146), Expect = 4e-09
Identities = 37/113 (32%), Positives = 54/113 (47%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
C C I+ +YI A N ++ F C C P F E +G YC + S
Sbjct: 476 CGGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFFE-HDGQPYCEVHYHERRGSL 534
Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCE 601
C C +PI + I A+ K +HP F+C C K + +G F KE+N++ YC+
Sbjct: 535 CSGCQKPITGRCITAMAKKFHPEHFVCAFCLKQLNKGTF--KEQNDKP--YCQ 583
Score = 33.5 bits (75), Expect = 0.72
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +2
Query: 245 DSNSAICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDF 421
+ ++C C+ I G I A K + HF C+FC K + F E + YC F
Sbjct: 529 ERRGSLCSGCQKPITGRCITAMAKKFHPEHFVCAFCLKQLNKGTFKEQNDKP-YCQSCF 586
>sp|P49023|PAXI_HUMAN Paxillin
Length = 591
Score = 97.8 bits (242), Expect = 3e-20
Identities = 51/151 (33%), Positives = 72/151 (47%)
Frame = +2
Query: 260 ICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVAS 439
+C CK I G + A K + HF C+ C++ I F E ++G YC +D+ +
Sbjct: 357 VCGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFE-RDGQPYCEKDYHNLFSP 415
Query: 440 RCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTF 619
RCY C PI+++ + AL + WHP F C C FH K+ YC KDY
Sbjct: 416 RCYYCNGPILDKVVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGK----AYCRKDYFDM 471
Query: 620 YEIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
+ KC GC AI + Y+ +H ECF
Sbjct: 472 FAPKCGGCARAI--LENYISALNTLWHPECF 500
Score = 80.5 bits (197), Expect = 5e-15
Identities = 45/150 (30%), Positives = 65/150 (43%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
C+ C I+ + A ++ + HF C+ C G + K+G YC +D+ A +
Sbjct: 417 CYYCNGPILDKVVTALDRTWHPEHFFCAQCGA-FFGPEGFHEKDGKAYCRKDYFDMFAPK 475
Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
C C + I+E I AL WHP CF+C C P G F E + Q YCE Y
Sbjct: 476 CGGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFF--EHDGQP--YCEVHYHERR 531
Query: 623 EIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
C GC+ I + + +H E F
Sbjct: 532 GSLCSGCQKPITG--RCITAMAKKFHPEHF 559
Score = 60.8 bits (146), Expect = 4e-09
Identities = 37/113 (32%), Positives = 54/113 (47%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
C C I+ +YI A N ++ F C C P F E +G YC + S
Sbjct: 476 CGGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFFE-HDGQPYCEVHYHERRGSL 534
Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCE 601
C C +PI + I A+ K +HP F+C C K + +G F KE+N++ YC+
Sbjct: 535 CSGCQKPITGRCITAMAKKFHPEHFVCAFCLKQLNKGTF--KEQNDKP--YCQ 583
Score = 33.5 bits (75), Expect = 0.72
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +2
Query: 245 DSNSAICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDF 421
+ ++C C+ I G I A K + HF C+FC K + F E + YC F
Sbjct: 529 ERRGSLCSGCQKPITGRCITAMAKKFHPEHFVCAFCLKQLNKGTFKEQNDKP-YCQNCF 586
>sp|P49024|PAXI_CHICK Paxillin
Length = 559
Score = 97.4 bits (241), Expect = 4e-20
Identities = 51/151 (33%), Positives = 72/151 (47%)
Frame = +2
Query: 260 ICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVAS 439
+C CK I G + A K + HF C+ C++ I F E ++G YC +D+ +
Sbjct: 325 VCGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFE-RDGQPYCEKDYHNLFSP 383
Query: 440 RCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTF 619
RCY C PI+++ + AL + WHP F C C FH K+ YC KDY
Sbjct: 384 RCYYCNGPILDKVVTALDRTWHPEHFFCAQCGVFFGPEGFHEKDGK----AYCRKDYFDM 439
Query: 620 YEIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
+ KC GC AI + Y+ +H ECF
Sbjct: 440 FAPKCGGCARAI--LENYISALNTLWHPECF 468
Score = 79.3 bits (194), Expect = 1e-14
Identities = 42/131 (32%), Positives = 59/131 (45%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
C+ C I+ + A ++ + HF C+ C G + K+G YC +D+ A +
Sbjct: 385 CYYCNGPILDKVVTALDRTWHPEHFFCAQCGV-FFGPEGFHEKDGKAYCRKDYFDMFAPK 443
Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
C C + I+E I AL WHP CF+C C P G F E + Q YCE Y
Sbjct: 444 CGGCARAILENYISALNTLWHPECFVCRECFTPFINGSFF--EHDGQP--YCEVHYHERR 499
Query: 623 EIKCFGCKLAI 655
C GC+ I
Sbjct: 500 GSLCSGCQKPI 510
Score = 62.8 bits (151), Expect = 1e-09
Identities = 38/113 (33%), Positives = 55/113 (48%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
C C I+ +YI A N ++ F C C P F E +G YC + S
Sbjct: 444 CGGCARAILENYISALNTLWHPECFVCRECFTPFINGSFFE-HDGQPYCEVHYHERRGSL 502
Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCE 601
C C +PI + I A+GK +HP F+C C K + +G F KE+N++ YC+
Sbjct: 503 CSGCQKPITGRCITAMGKKFHPEHFVCAFCLKQLNKGTF--KEQNDKP--YCQ 551
Score = 34.3 bits (77), Expect = 0.42
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +2
Query: 245 DSNSAICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDF 421
+ ++C C+ I G I A K + HF C+FC K + F E + YC F
Sbjct: 497 ERRGSLCSGCQKPITGRCITAMGKKFHPEHFVCAFCLKQLNKGTFKEQNDKP-YCQNCF 554
>sp|Q62920|PDLI5_RAT PDZ and LIM domain protein 5 (Enigma homolog) (Enigma-like PDZ and
LIM domains protein)
Length = 591
Score = 97.4 bits (241), Expect = 4e-20
Identities = 51/157 (32%), Positives = 77/157 (49%)
Frame = +2
Query: 242 ADSNSAICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDF 421
A + +C C I G ++ A K + F C+ CK + F+E K G LYC +
Sbjct: 408 AGKRTPMCAHCNQAIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEK-GALYCELCY 466
Query: 422 TANVASRCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCE 601
A C +C + I+ + I AL + WH SCF+C C KPI FH+++ YCE
Sbjct: 467 EKFFAPECGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEP----YCE 522
Query: 602 KDYKTFYEIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
DY + C GC+ I++ D +L+ + +H CF
Sbjct: 523 TDYYALFGTICRGCEFPIEAGDMFLEALGSTWHDTCF 559
Score = 59.7 bits (143), Expect = 9e-09
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
C C+ +I+G I A + + + F C C KPI+ F ++G YC D+ A +
Sbjct: 474 CGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVF-HLEDGEPYCETDYYALFGTI 532
Query: 443 CYQCLQPII--EQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEE 574
C C PI + + ALG WH +CF+C+ C + + F K++
Sbjct: 533 CRGCEFPIEAGDMFLEALGSTWHDTCFVCSVCCESLEGQTFFSKKD 578
>sp|O60711|LPXN_HUMAN Leupaxin
Length = 386
Score = 96.7 bits (239), Expect = 7e-20
Identities = 48/150 (32%), Positives = 72/150 (48%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
C C+ I G I A + + HF C+ CK+ I + F E + G YC D+ + R
Sbjct: 152 CASCQKPIAGKVIHALGQSWHPEHFVCTHCKEEIGSSPFFE-RSGLAYCPNDYHQLFSPR 210
Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
C C PI+++ + A+ + WHP F C+HC + FH K++ YC KD+ +
Sbjct: 211 CAYCAAPILDKVLTAMNQTWHPEHFFCSHCGEVFGAEGFHEKDKKP----YCRKDFLAMF 266
Query: 623 EIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
KC GC + + YL +H ECF
Sbjct: 267 SPKCGGCNRPV--LENYLSAMDTVWHPECF 294
Score = 75.1 bits (183), Expect = 2e-13
Identities = 39/127 (30%), Positives = 58/127 (45%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
C C I+ + A N+ + HF CS C + + G + K+ YC +DF A + +
Sbjct: 211 CAYCAAPILDKVLTAMNQTWHPEHFFCSHCGE-VFGAEGFHEKDKKPYCRKDFLAMFSPK 269
Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
C C +P++E + A+ WHP CF+C C G F E + + F CE Y
Sbjct: 270 CGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFF--ELDGRPF--CELHYHHRR 325
Query: 623 EIKCFGC 643
C GC
Sbjct: 326 GTLCHGC 332
Score = 53.5 bits (127), Expect = 7e-07
Identities = 31/122 (25%), Positives = 57/122 (46%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
C C ++ +Y+ A + ++ F C C F E +G +C + +
Sbjct: 270 CGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFEL-DGRPFCELHYHHRRGTL 328
Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
C+ C QPI + I A+G +HP F+C C + +G F +E+N++T YC+ + +
Sbjct: 329 CHGCGQPITGRCISAMGYKFHPEHFVCAFCLTQLSKGIF--REQNDKT--YCQPCFNKLF 384
Query: 623 EI 628
+
Sbjct: 385 PL 386
>sp|Q96HC4|PDLI5_HUMAN PDZ and LIM domain protein 5 (Enigma homolog) (Enigma-like PDZ and
LIM domains protein)
Length = 596
Score = 96.3 bits (238), Expect = 9e-20
Identities = 51/157 (32%), Positives = 76/157 (48%)
Frame = +2
Query: 242 ADSNSAICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDF 421
A + +C C I G ++ A K + F C+ CK + F+E K G LYC +
Sbjct: 413 AGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEK-GALYCELCY 471
Query: 422 TANVASRCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCE 601
A C +C + I+ + I AL + WH SCF+C C KPI FH+++ YCE
Sbjct: 472 EKFFAPECGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEP----YCE 527
Query: 602 KDYKTFYEIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
DY + C GC+ I++ D +L+ +H CF
Sbjct: 528 TDYYALFGTICHGCEFPIEAGDMFLEALGYTWHDTCF 564
Score = 60.5 bits (145), Expect = 6e-09
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
C C+ +I+G I A + + + F C C KPI+ F ++G YC D+ A +
Sbjct: 479 CGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVF-HLEDGEPYCETDYYALFGTI 537
Query: 443 CYQCLQPII--EQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEE 574
C+ C PI + + ALG WH +CF+C+ C + + F K++
Sbjct: 538 CHGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKD 583
>sp|Q8CI51|PDLI5_MOUSE PDZ and LIM domain protein 5 (Enigma homolog) (Enigma-like PDZ and
LIM domains protein)
Length = 591
Score = 95.5 bits (236), Expect = 2e-19
Identities = 51/157 (32%), Positives = 76/157 (48%)
Frame = +2
Query: 242 ADSNSAICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDF 421
A + +C C I G ++ A K + F C+ CK + F+E K G LYC +
Sbjct: 408 AGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEK-GALYCELCY 466
Query: 422 TANVASRCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCE 601
A C +C + I+ + I AL + WH SCF+C C KPI FH+++ YCE
Sbjct: 467 EKFFAPECGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEP----YCE 522
Query: 602 KDYKTFYEIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
DY + C GC+ I++ D +L+ +H CF
Sbjct: 523 TDYYALFGTICRGCEFPIEAGDMFLEALGYTWHDTCF 559
Score = 58.9 bits (141), Expect = 2e-08
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
C C+ +I+G I A + + + F C C KPI+ F ++G YC D+ A +
Sbjct: 474 CGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVF-HLEDGEPYCETDYYALFGTI 532
Query: 443 CYQCLQPII--EQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEE 574
C C PI + + ALG WH +CF+C+ C + + F K++
Sbjct: 533 CRGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKD 578
>sp|Q09476|YP96_CAEEL Hypothetical protein C28H8.6 in chromosome III
Length = 256
Score = 85.1 bits (209), Expect = 2e-16
Identities = 44/150 (29%), Positives = 74/150 (49%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
C C IIG + A K++ H+ C C + F E + G +C ED+ + +
Sbjct: 19 CAACGKPIIGQVVIALGKMWHPEHYTCCECGAELGQRPFFE-RNGRAFCEEDYHNQFSPK 77
Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
C C + I ++ + + K +H CF C C++P + FH E+N QT YC++D+ +
Sbjct: 78 CQGCHRAITDRCVSVMNKNFHIECFTCAECNQPFGEDGFH--EKNGQT--YCKRDFFRLF 133
Query: 623 EIKCFGCKLAIDSDDKYLQVGTNNYHVECF 712
KC GC I S+ ++ ++H +CF
Sbjct: 134 APKCNGCSQPITSN--FITALGTHWHPDCF 161
Score = 73.2 bits (178), Expect = 8e-13
Identities = 48/151 (31%), Positives = 61/151 (40%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
C C I + NK + F C+ C +P F E K G YC DF A +
Sbjct: 78 CQGCHRAITDRCVSVMNKNFHIECFTCAECNQPFGEDGFHE-KNGQTYCKRDFFRLFAPK 136
Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
C C QPI I ALG WHP CF+C HC F E N CE+ Y
Sbjct: 137 CNGCSQPITSNFITALGTHWHPDCFVCQHCGVSFNGASFF--EHNGAPL--CERHYHESR 192
Query: 623 EIKCFGCKLAIDSDDKYLQVGTNNYHVECFK 715
C C+ AI+ + + +H E F+
Sbjct: 193 GSICSQCRGAING--RCVAAMGRKFHPEHFR 221
Score = 54.7 bits (130), Expect = 3e-07
Identities = 34/122 (27%), Positives = 53/122 (43%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
C C I ++I A + + F C C G F E G C + + S
Sbjct: 137 CNGCSQPITSNFITALGTHWHPDCFVCQHCGVSFNGASFFE-HNGAPLCERHYHESRGSI 195
Query: 443 CYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEKDYKTFY 622
C QC I + + A+G+ +HP F C++C+ + +G F KE + + F C K Y Y
Sbjct: 196 CSQCRGAINGRCVAAMGRKFHPEHFRCSYCNHQLTKGTF--KEVDRRPF--CHKCYNNTY 251
Query: 623 EI 628
+
Sbjct: 252 AL 253
Score = 32.0 bits (71), Expect = 2.1
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 245 DSNSAICFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPI-KGT 373
+S +IC C+ I G + A + + HF CS+C + KGT
Sbjct: 190 ESRGSICSQCRGAINGRCVAAMGRKFHPEHFRCSYCNHQLTKGT 233
>sp|Q9UGP4|LIMD1_HUMAN LIM domains-containing protein 1
Length = 676
Score = 83.6 bits (205), Expect = 6e-16
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Frame = +2
Query: 263 CFVCKDRIIGS--YIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTAN-- 430
C C + G+ +A +Y F C+ C + ++G F G ++C EDF +
Sbjct: 472 CVKCSKGVFGAGQACQAMGNLYHDTCFTCAACSRKLRGKAFYFVN-GKVFCEEDFLYSGF 530
Query: 431 --VASRCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEK 604
A RC+ C I++ + ALGK +HP CF C C++ + F + EN IYC +
Sbjct: 531 QQSADRCFLCGHLIMDMILQALGKSYHPGCFRCVICNECLDGVPFTVDSENK---IYCVR 587
Query: 605 DYKTFYEIKCFGCKLAI---DSDDKYLQVGT--NNYHVECF 712
DY KC C L I + D+ ++V + +YHVEC+
Sbjct: 588 DYHKVLAPKCAACGLPILPPEGSDETIRVVSMDRDYHVECY 628
Score = 54.7 bits (130), Expect = 3e-07
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
CF+C I+ ++A K Y F C C + + G F E +YC+ D+ +A +
Sbjct: 537 CFLCGHLIMDMILQALGKSYHPGCFRCVICNECLDGVPFTVDSENKIYCVRDYHKVLAPK 596
Query: 443 CYQCLQPIIEQQ-------IMALGKCWHPSCFLCNHC 532
C C PI+ + ++++ + +H C+ C C
Sbjct: 597 CAACGLPILPPEGSDETIRVVSMDRDYHVECYHCEDC 633
>sp|Q9QXD8|LIMD1_MOUSE LIM domains-containing protein 1
Length = 668
Score = 82.4 bits (202), Expect = 1e-15
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Frame = +2
Query: 263 CFVCKDRIIGS--YIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTAN-- 430
C C + G+ +A +Y F C+ C + ++G F G ++C EDF +
Sbjct: 464 CVKCSKGVFGAGQACQAMGDLYHDACFTCAACSRKLRGKAFYFVN-GKVFCEEDFLYSGF 522
Query: 431 --VASRCYQCLQPIIEQQIMALGKCWHPSCFLCNHCHKPIPQGQFHIKEENNQTFIYCEK 604
A RC+ C I++ + ALGK +HP CF C C++ + F + EN IYC +
Sbjct: 523 QQSADRCFLCGHLIMDMILQALGKSYHPGCFRCVICNECLDGVPFTVDSENK---IYCVR 579
Query: 605 DYKTFYEIKCFGCKLAI---DSDDKYLQVGT--NNYHVECF 712
DY KC C L I + D+ ++V + +YHVEC+
Sbjct: 580 DYHKVLAPKCAACGLPILPPEGSDETIRVVSMDRDYHVECY 620
Score = 54.7 bits (130), Expect = 3e-07
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Frame = +2
Query: 263 CFVCKDRIIGSYIEANNKIYCSNHFCCSFCKKPIKGTQFIETKEGTLYCMEDFTANVASR 442
CF+C I+ ++A K Y F C C + + G F E +YC+ D+ +A +
Sbjct: 529 CFLCGHLIMDMILQALGKSYHPGCFRCVICNECLDGVPFTVDSENKIYCVRDYHKVLAPK 588
Query: 443 CYQCLQPIIEQQ-------IMALGKCWHPSCFLCNHC 532
C C PI+ + ++++ + +H C+ C C
Sbjct: 589 CAACGLPILPPEGSDETIRVVSMDRDYHVECYHCEDC 625
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,968,743
Number of Sequences: 369166
Number of extensions: 1462725
Number of successful extensions: 4251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4012
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)