Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02410
(699 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q85BR7|MATK_HORML Maturase K (Intron maturase) 30 8.0
sp|Q85ZU4|MATK_HORLE Maturase K (Intron maturase) >gi|68052... 30 8.0
sp|O84632|Y627_CHLTR Hypothetical UPF0176 protein CT627 30 8.0
sp|P17158|MATK_HORVU Maturase K (Intron maturase) >gi|68052... 30 8.0
sp|Q85ZS9|MATK_HORSA Maturase K (Intron maturase) 30 8.0
sp|Q85ZV6|MATK_HORBU Maturase K (Intron maturase) 30 8.0
>sp|Q85BR7|MATK_HORML Maturase K (Intron maturase)
Length = 511
Score = 29.6 bits (65), Expect = 8.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 174 WNYQPKYFLYTNIQNHHLIEILNNCSFILSSIESINKSPLI 52
W Y +F +T + H+ ++ N+C + + S+ KSPL+
Sbjct: 309 WQYY--FFFWTQPRRIHINQLANSCFDFMGYLSSVPKSPLL 347
>sp|Q85ZU4|MATK_HORLE Maturase K (Intron maturase)
sp|Q85ZU5|MATK_HORJU Maturase K (Intron maturase)
Length = 511
Score = 29.6 bits (65), Expect = 8.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 174 WNYQPKYFLYTNIQNHHLIEILNNCSFILSSIESINKSPLI 52
W Y +F +T + H+ ++ N+C + + S+ KSPL+
Sbjct: 309 WQYY--FFFWTQPRRIHINQLANSCFDFMGYLSSVPKSPLL 347
>sp|O84632|Y627_CHLTR Hypothetical UPF0176 protein CT627
Length = 327
Score = 29.6 bits (65), Expect = 8.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 84 SIESINKSPLINCDSDEYFNCFTNTCRN 1
++ I + L N DSD Y+NC C N
Sbjct: 239 NVSPIARCSLCNTDSDTYYNCANTDCNN 266
>sp|P17158|MATK_HORVU Maturase K (Intron maturase)
sp|Q76LM0|MATK_HORVD Maturase K (Intron maturase)
sp|Q76LL9|MATK_HORSP Maturase K (Intron maturase)
Length = 511
Score = 29.6 bits (65), Expect = 8.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 174 WNYQPKYFLYTNIQNHHLIEILNNCSFILSSIESINKSPLI 52
W Y +F +T + H+ ++ N+C + + S+ KSPL+
Sbjct: 309 WQYY--FFFWTQPRRIHINQLANSCFDFMGYLSSVPKSPLL 347
>sp|Q85ZS9|MATK_HORSA Maturase K (Intron maturase)
Length = 511
Score = 29.6 bits (65), Expect = 8.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 174 WNYQPKYFLYTNIQNHHLIEILNNCSFILSSIESINKSPLI 52
W Y +F +T + H+ ++ N+C + + S+ KSPL+
Sbjct: 309 WQYY--FFFWTQPRRIHINQLANSCFDFMGYLSSVPKSPLL 347
>sp|Q85ZV6|MATK_HORBU Maturase K (Intron maturase)
Length = 511
Score = 29.6 bits (65), Expect = 8.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 174 WNYQPKYFLYTNIQNHHLIEILNNCSFILSSIESINKSPLI 52
W Y +F +T + H+ ++ N+C + + S+ KSPL+
Sbjct: 309 WQYY--FFFWTQPRRIHINQLANSCFDFMGYLSSVPKSPLL 347
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,166,160
Number of Sequences: 369166
Number of extensions: 1299260
Number of successful extensions: 2786
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2786
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6073541875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)