Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02401
(211 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52444|VU26_HHV6U Protein U26 28 8.6
sp|P52443|VU26_HHV6G Protein U26 28 8.6
>sp|P52444|VU26_HHV6U Protein U26
Length = 295
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 11 RLSVIKNECVIIVDTYLPVIFSIARSTLNSKVQSFSSVHITL 136
RL +I + CV+I+ +Y P +F+ +L K Q F + +
Sbjct: 94 RLRMILSRCVMIMPSYSPAVFTGIMVSLFFKSQMFDDYSVLI 135
>sp|P52443|VU26_HHV6G Protein U26
Length = 295
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 11 RLSVIKNECVIIVDTYLPVIFSIARSTLNSKVQSFSSVHITL 136
RL +I + CV+I+ +Y P +F+ +L K Q F + +
Sbjct: 94 RLRMILSRCVMIMPSYSPAVFTGIMVSLFFKSQMFDDYSVLI 135
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,932,652
Number of Sequences: 369166
Number of extensions: 286356
Number of successful extensions: 544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 68,354,980
effective HSP length: 41
effective length of database: 60,780,845
effective search space used: 1701863660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)