Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02395
(863 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q17667|YANI_CAEEL Hypothetical protein C05E11.1 in chrom... 69 2e-11
sp|Q9ZQ34|Y2433_ARATH Hypothetical protein At2g24330 52 2e-06
sp|Q9UGN5|PARP2_HUMAN Poly [ADP-ribose] polymerase-2 (PARP-... 37 0.054
sp|O88554|PARP2_MOUSE Poly [ADP-ribose] polymerase-2 (PARP-... 34 0.60
sp|P13529|POLG_PPVD Genome polyprotein [Contains: P1 protei... 33 1.3
sp|P52340|TEGU_HHV6U Large tegument protein 32 1.8
sp|P35663|CYLC1_HUMAN Cylicin-1 (Cylicin I) (Multiple-band ... 32 1.8
sp|Q6FTW5|GCN5_CANGA Histone acetyltransferase GCN5 32 1.8
sp|P34329|PDIA4_CAEEL Probable protein disulfide-isomerase ... 32 1.8
sp|P30002|TEGU_HHV6G Large tegument protein 32 1.8
>sp|Q17667|YANI_CAEEL Hypothetical protein C05E11.1 in chromosome X
Length = 342
Score = 68.9 bits (167), Expect = 2e-11
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 9/168 (5%)
Frame = +1
Query: 322 KET--YKKANEILNKFDPNFEFRNEYENFPGKKLRISSDHNSDSELDKKNLTANK----- 480
KET +K+A EIL++ YE +D S K LTA+
Sbjct: 119 KETLKFKEAKEILDR----------YEKIEQNTTIDKNDSTLKSPSPIKKLTADSSMFAT 168
Query: 481 PKQISEPIKTVSVN--DLRKHEFSKKPMSVITSEIKLVRPLLNQNRSSFDKFIDFVVGDG 654
PKQ + ++T + + + + P +RP L Q ++FD+ +D+ + DG
Sbjct: 169 PKQEQKRVETPTAQGPNSAMNSMNMTPYHQRNRNAVPIRPFLRQT-TAFDRVLDYFMSDG 227
Query: 655 FDRRYALICKHCSSHNGMALAEEFPFIGFKCAYCMGFNAPRKTKPDPP 798
+ R ALIC C +HNGM+ E+P+I F+C C N +K P P
Sbjct: 228 PNCRNALICSICHTHNGMSTPAEYPYISFRCFECGHLNPAKKMGPQIP 275
>sp|Q9ZQ34|Y2433_ARATH Hypothetical protein At2g24330
Length = 408
Score = 52.4 bits (124), Expect = 2e-06
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +1
Query: 640 VVGDGFDRRYALICKHCSSHNGMALAEEFPFIGFKCAYCMGFNAPRKTK 786
+VG+ + YALIC +C HNG+A E+FP+I + C +C N P+ ++
Sbjct: 300 LVGEDPSQSYALICGNCRMHNGLARKEDFPYITYYCPHCRALNKPKHSE 348
>sp|Q9UGN5|PARP2_HUMAN Poly [ADP-ribose] polymerase-2 (PARP-2) (NAD(+)
ADP-ribosyltransferase-2) (Poly[ADP-ribose]
synthetase-2) (pADPRT-2) (hPARP-2)
Length = 583
Score = 37.4 bits (85), Expect = 0.054
Identities = 26/102 (25%), Positives = 50/102 (49%)
Frame = +1
Query: 322 KETYKKANEILNKFDPNFEFRNEYENFPGKKLRISSDHNSDSELDKKNLTANKPKQISEP 501
KE ++K + L+K N+E R ++E PGK + D+ ++++ +++ K + + P
Sbjct: 173 KEIFQK--KFLDKTKNNWEDREKFEKVPGKYDMLQMDYATNTQDEEE---TKKEESLKSP 227
Query: 502 IKTVSVNDLRKHEFSKKPMSVITSEIKLVRPLLNQNRSSFDK 627
+K S DLR E K +V E ++ N ++ K
Sbjct: 228 LKPESQLDLRVQELIKLICNVQAMEEMMMEMKYNTKKAPLGK 269
>sp|O88554|PARP2_MOUSE Poly [ADP-ribose] polymerase-2 (PARP-2) (NAD(+)
ADP-ribosyltransferase-2) (Poly[ADP-ribose]
synthetase-2) (pADPRT-2) (mPARP-2)
Length = 559
Score = 33.9 bits (76), Expect = 0.60
Identities = 32/133 (24%), Positives = 56/133 (42%)
Frame = +1
Query: 322 KETYKKANEILNKFDPNFEFRNEYENFPGKKLRISSDHNSDSELDKKNLTANKPKQISEP 501
KE ++K + L+K N+E R +E PGK + D+ + ++ + K + E
Sbjct: 153 KEIFQK--KFLDKTKNNWEDRENFEKVPGKYDMLQMDYAASTQDESKT-------KEEET 203
Query: 502 IKTVSVNDLRKHEFSKKPMSVITSEIKLVRPLLNQNRSSFDKFIDFVVGDGFDRRYALIC 681
+K S DLR E K +V T E ++ + R+ K + G+ +
Sbjct: 204 LKPESQLDLRVQELLKLICNVQTMEEMMIEMKYDTKRAPLGKLTVAQIKAGYQSLKKIED 263
Query: 682 KHCSSHNGMALAE 720
+ +G AL E
Sbjct: 264 CIRAGQHGRALVE 276
>sp|P13529|POLG_PPVD Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
Helper component proteinase (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein
B (NI-b) (NIb) (RNA-directed RNA polymerase); Coat
protein (CP)]
Length = 3141
Score = 32.7 bits (73), Expect = 1.3
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 322 KETYKKANEILNKFDPNFEFRNEYEN-FPGKKLRISSDHNSDSELDKK 462
K + K++NEI++ DP +F + + N F KLR +DH S S+LD K
Sbjct: 296 KVSKKQSNEIIHYSDPGKQFSDGFTNSFMQCKLR-ETDHQSTSDLDVK 342
>sp|P52340|TEGU_HHV6U Large tegument protein
Length = 2077
Score = 32.3 bits (72), Expect = 1.8
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Frame = +1
Query: 307 TNVIEKETYKKANEILNKFDPNFEFRNEYENFPGKKL--RISSDHNSDSELDKKNLTANK 480
TN+I Y K +ILN+ PN N PGK+ +++ + S+ + K +T
Sbjct: 1963 TNLISFHLYPKTTDILNQLPPN----NTESTRPGKQTSETLTNKNLSEPKFKKPAVTGLM 2018
Query: 481 PKQISEPIKTVSVNDLRKHEFSKKPMSVITSEIKLVRPLLNQNRSSFDKFI 633
PK S + T + + S ++ L R +N+ S + I
Sbjct: 2019 PKSQSIILSTDTNVPETSPDVKANTASAAIKDVTLAREKINEFSESINTTI 2069
>sp|P35663|CYLC1_HUMAN Cylicin-1 (Cylicin I) (Multiple-band polypeptide I)
Length = 651
Score = 32.3 bits (72), Expect = 1.8
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Frame = +1
Query: 307 TNVIEKETYKKANEILNKFDPNFEFRNEYENFPGKKLRISSDHNSDSELDK---KNLTAN 477
TN K+ ++ + N+ D ++ +EN KK + SS+ N +S+ K KN +
Sbjct: 140 TNPESKQIVEEKTKRQNEADKT-PLKSSHENEQSKKSKSSSETNPESQNSKTVSKNCSQK 198
Query: 478 KPKQISEPIKTVSV---------NDLRKHEFSKKPMSVITSEIKLVRPLLNQNRSSFDKF 630
K KT + DL++ + S P+S I SE L L S D+
Sbjct: 199 DKKDSKNSKKTNTEFLHTKNNPKKDLKRSKTSNDPISEICSENSLNVDFLMLVGQSDDES 258
Query: 631 IDFVVGDGFDRRYA 672
I+F D + R Y+
Sbjct: 259 INF---DAWLRNYS 269
>sp|Q6FTW5|GCN5_CANGA Histone acetyltransferase GCN5
Length = 546
Score = 32.3 bits (72), Expect = 1.8
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +1
Query: 499 PIKTVSVNDLRKHEFSKKPMSVITSEIKLVRPLLNQNRSSFDKFIDFVVGDGFDRRYALI 678
P+ V D +EF K+PM + T E+KL + ++K +F+ +D R L+
Sbjct: 462 PVNKEEVPDY--YEFIKEPMDLSTMELKL-------ENNKYEKMEEFI----YDAR--LV 506
Query: 679 CKHCSSHNG 705
C +C +NG
Sbjct: 507 CNNCRLYNG 515
>sp|P34329|PDIA4_CAEEL Probable protein disulfide-isomerase A4 precursor (ERp-72 homolog)
Length = 618
Score = 32.3 bits (72), Expect = 1.8
Identities = 36/128 (28%), Positives = 49/128 (38%)
Frame = +1
Query: 313 VIEKETYKKANEILNKFDPNFEFRNEYENFPGKKLRISSDHNSDSELDKKNLTANKPKQI 492
V ++E + K E L D E + GKK ++ D D ELD+ NL A KQI
Sbjct: 423 VADEEEFAKELEELGLGDSGLEHNVVVFGYDGKKYPMNPDE-FDGELDE-NLEAFM-KQI 479
Query: 493 SEPIKTVSVNDLRKHEFSKKPMSVITSEIKLVRPLLNQNRSSFDKFIDFVVGDGFDRRYA 672
S V + K P+ + S+FDK ++ D YA
Sbjct: 480 SSGKAKAHVKSAPAPKDDKGPVKTVVG-------------SNFDKIVNDESKDVLIEFYA 526
Query: 673 LICKHCSS 696
C HC S
Sbjct: 527 PWCGHCKS 534
>sp|P30002|TEGU_HHV6G Large tegument protein
Length = 2077
Score = 32.3 bits (72), Expect = 1.8
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Frame = +1
Query: 307 TNVIEKETYKKANEILNKFDPNFEFRNEYENFPGKKL--RISSDHNSDSELDKKNLTANK 480
TN+I Y K +ILN+ PN N PGK+ +++ + S+ + K +T
Sbjct: 1963 TNLISFHLYPKTTDILNQLPPN----NTESTRPGKQTSETLTTKNLSEPKFKKPAVTGLM 2018
Query: 481 PKQISEPIKTVSVNDLRKHEFSKKPMSVITSEIKLVRPLLNQNRSSFDKFI 633
PK S + T + + S ++ L R +N+ S + I
Sbjct: 2019 PKSQSIILSTDTNVPETSPDVKANTASAAIKDVTLAREKINEFSESINTTI 2069
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,226,874
Number of Sequences: 369166
Number of extensions: 1952764
Number of successful extensions: 5962
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5958
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)