Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02394
(661 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91YY2|B4GT3_MOUSE Beta-1,4-galactosyltransferase 3 (Bet... 100 3e-21
sp|O60512|B4GT3_HUMAN Beta-1,4-galactosyltransferase 3 (Bet... 100 3e-21
sp|Q5NVN3|B4GT3_PONPY Beta-1,4-galactosyltransferase 3 (Bet... 100 3e-21
sp|Q6P768|B4GT3_RAT Beta-1,4-galactosyltransferase 3 (Beta-... 100 3e-21
sp|Q80WN8|B4GT3_CRIGR Beta-1,4-galactosyltransferase 3 (Bet... 100 3e-21
sp|Q5EA87|B4GT3_BOVIN Beta-1,4-galactosyltransferase 3 (Bet... 100 3e-21
sp|Q80WN9|B4GT2_CRIGR Beta-1,4-galactosyltransferase 2 (Bet... 91 2e-18
sp|O60909|B4GT2_HUMAN Beta-1,4-galactosyltransferase 2 (Bet... 91 3e-18
sp|Q9Z2Y2|B4GT2_MOUSE Beta-1,4-galactosyltransferase 2 (Bet... 90 6e-18
sp|Q80WN7|B4GT4_CRIGR Beta-1,4-galactosyltransferase 4 (Bet... 88 2e-17
>sp|Q91YY2|B4GT3_MOUSE Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 395
Score = 100 bits (250), Expect = 3e-21
Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Frame = +2
Query: 5 NDLNLYFCD-NGVRQISSAIDDTRYHVMFWNNAGGVVSISLKNYLKINGHPNVYWGWGNE 181
ND NLY CD G R ++ A++ Y + + GGV +++ YLK+NG PN YWGWG E
Sbjct: 204 NDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPNEYWGWGGE 263
Query: 182 DDDFSIRTKLSNLQLSRPYEHIGRFKMVKHLRGFR----NTEAYWLFLSFRGRWPHDGLN 349
DDD + R +L+ +++SRP +G +KMVKH RG + N + L + + W DG+N
Sbjct: 264 DDDIATRVRLAGMKISRPPTSVGHYKMVKH-RGDKGNEENPHRFDLLVRTQNSWTQDGMN 322
Query: 350 SL 355
SL
Sbjct: 323 SL 324
>sp|O60512|B4GT3_HUMAN Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 393
Score = 100 bits (250), Expect = 3e-21
Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Frame = +2
Query: 5 NDLNLYFCD-NGVRQISSAIDDTRYHVMFWNNAGGVVSISLKNYLKINGHPNVYWGWGNE 181
ND NLY CD G R ++ A++ Y + + GGV +++ YLK+NG PN YWGWG E
Sbjct: 202 NDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPNEYWGWGGE 261
Query: 182 DDDFSIRTKLSNLQLSRPYEHIGRFKMVKHLRGFR----NTEAYWLFLSFRGRWPHDGLN 349
DDD + R +L+ +++SRP +G +KMVKH RG + N + L + + W DG+N
Sbjct: 262 DDDIATRVRLAGMKISRPPTSVGHYKMVKH-RGDKGNEENPHRFDLLVRTQNSWTQDGMN 320
Query: 350 SL 355
SL
Sbjct: 321 SL 322
>sp|Q5NVN3|B4GT3_PONPY Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 393
Score = 100 bits (250), Expect = 3e-21
Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Frame = +2
Query: 5 NDLNLYFCD-NGVRQISSAIDDTRYHVMFWNNAGGVVSISLKNYLKINGHPNVYWGWGNE 181
ND NLY CD G R ++ A++ Y + + GGV +++ YLK+NG PN YWGWG E
Sbjct: 202 NDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPNEYWGWGGE 261
Query: 182 DDDFSIRTKLSNLQLSRPYEHIGRFKMVKHLRGFR----NTEAYWLFLSFRGRWPHDGLN 349
DDD + R +L+ +++SRP +G +KMVKH RG + N + L + + W DG+N
Sbjct: 262 DDDIATRVRLAGMKISRPPTSVGHYKMVKH-RGDKGNEENPHRFDLLVRTQNSWTQDGMN 320
Query: 350 SL 355
SL
Sbjct: 321 SL 322
>sp|Q6P768|B4GT3_RAT Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 395
Score = 100 bits (250), Expect = 3e-21
Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Frame = +2
Query: 5 NDLNLYFCD-NGVRQISSAIDDTRYHVMFWNNAGGVVSISLKNYLKINGHPNVYWGWGNE 181
ND NLY CD G R ++ A++ Y + + GGV +++ YLK+NG PN YWGWG E
Sbjct: 204 NDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPNEYWGWGGE 263
Query: 182 DDDFSIRTKLSNLQLSRPYEHIGRFKMVKHLRGFR----NTEAYWLFLSFRGRWPHDGLN 349
DDD + R +L+ +++SRP +G +KMVKH RG + N + L + + W DG+N
Sbjct: 264 DDDIATRVRLAGMKISRPPTSVGHYKMVKH-RGDKGNEENPHRFDLLVRTQNSWTQDGMN 322
Query: 350 SL 355
SL
Sbjct: 323 SL 324
>sp|Q80WN8|B4GT3_CRIGR Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 395
Score = 100 bits (250), Expect = 3e-21
Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Frame = +2
Query: 5 NDLNLYFCD-NGVRQISSAIDDTRYHVMFWNNAGGVVSISLKNYLKINGHPNVYWGWGNE 181
ND NLY CD G R ++ A++ Y + + GGV +++ YLK+NG PN YWGWG E
Sbjct: 204 NDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPNEYWGWGGE 263
Query: 182 DDDFSIRTKLSNLQLSRPYEHIGRFKMVKHLRGFR----NTEAYWLFLSFRGRWPHDGLN 349
DDD + R +L+ +++SRP +G +KMVKH RG + N + L + + W DG+N
Sbjct: 264 DDDIATRVRLAGMKISRPPTSVGHYKMVKH-RGDKGNEENPHRFDLLVRTQNSWTQDGMN 322
Query: 350 SL 355
SL
Sbjct: 323 SL 324
>sp|Q5EA87|B4GT3_BOVIN Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 396
Score = 100 bits (250), Expect = 3e-21
Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Frame = +2
Query: 5 NDLNLYFCD-NGVRQISSAIDDTRYHVMFWNNAGGVVSISLKNYLKINGHPNVYWGWGNE 181
ND NLY CD G R ++ A++ Y + + GGV +++ YLK+NG PN YWGWG E
Sbjct: 205 NDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPNEYWGWGGE 264
Query: 182 DDDFSIRTKLSNLQLSRPYEHIGRFKMVKHLRGFR----NTEAYWLFLSFRGRWPHDGLN 349
DDD + R +L+ +++SRP +G +KMVKH RG + N + L + + W DG+N
Sbjct: 265 DDDIATRVRLAGMKISRPPTSVGHYKMVKH-RGDKGNEENPHRFDLLVRTQNSWTQDGMN 323
Query: 350 SL 355
SL
Sbjct: 324 SL 325
>sp|Q80WN9|B4GT2_CRIGR Beta-1,4-galactosyltransferase 2 (Beta-1,4-GalTase 2) (Beta4Gal-T2)
(b4Gal-T2) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 2) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 2) [Includes: Lactose
synthase A protein ; N-acetyllactosamine synthase (Nal
synthetase); Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 369
Score = 91.3 bits (225), Expect = 2e-18
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 5/173 (2%)
Frame = +2
Query: 5 NDLNLYFCDNGVRQISSAIDDTRYHVMFWNNAGGVVSISLKNYLKINGHPNVYWGWGNED 184
+D NLY C + R + A+D + + + + GGV +S +L+ING PN YWGWG ED
Sbjct: 220 DDRNLYRCGDQPRHFAIAMDKFGFRLPYASYFGGVSGLSKAQFLRINGFPNEYWGWGGED 279
Query: 185 DDFSIRTKLSNLQLSRPYEHIGRFKMVKHLRGFRNTEAYWLFLSFRG-----RWPHDGLN 349
DD R L+ +++SRP IGR++M+KH R N F + +W DG+
Sbjct: 280 DDIFNRISLTGMKISRPDVRIGRYRMIKHDRDKHNEPNPQRFSKIQNTKLSMKW--DGIG 337
Query: 350 SLHRLSNLVDIDAFVKKNLSMLTQRSKYIPFKSPYQVLSISKEKLYTNISVRV 508
SL Y+VL +S++ L+TNI+V +
Sbjct: 338 SLR-------------------------------YRVLEVSRQPLFTNITVDI 359
>sp|O60909|B4GT2_HUMAN Beta-1,4-galactosyltransferase 2 (Beta-1,4-GalTase 2) (Beta4Gal-T2)
(b4Gal-T2) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 2) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 2) [Includes: Lactose
synthase A protein ; N-acetyllactosamine synthase (Nal
synthetase); Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 372
Score = 90.9 bits (224), Expect = 3e-18
Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Frame = +2
Query: 5 NDLNLYFCDNGVRQISSAIDDTRYHVMFWNNAGGVVSISLKNYLKINGHPNVYWGWGNED 184
+D NLY C + R + A+D + + + GGV +S +L+ING PN YWGWG ED
Sbjct: 223 DDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGED 282
Query: 185 DDFSIRTKLSNLQLSRPYEHIGRFKMVKHLRGFRNTEAYWLFLSFRG---RWPHDGLNSL 355
DD R L+ +++SRP IGR++M+KH R N F + DG+ S+
Sbjct: 283 DDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSV 342
Query: 356 HRLSNLVDIDAFVKKNLSMLTQRSKYIPFKSPYQVLSISKEKLYTNISVRV 508
YQVL +S++ L+TNI+V +
Sbjct: 343 R-------------------------------YQVLEVSRQPLFTNITVDI 362
>sp|Q9Z2Y2|B4GT2_MOUSE Beta-1,4-galactosyltransferase 2 (Beta-1,4-GalTase 2) (Beta4Gal-T2)
(b4Gal-T2) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 2) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 2) [Includes: Lactose
synthase A protein ; N-acetyllactosamine synthase (Nal
synthetase); Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 369
Score = 89.7 bits (221), Expect = 6e-18
Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 5/173 (2%)
Frame = +2
Query: 5 NDLNLYFCDNGVRQISSAIDDTRYHVMFWNNAGGVVSISLKNYLKINGHPNVYWGWGNED 184
+D NLY C + R + A+D + + + + GGV +S +L+ING PN YWGWG ED
Sbjct: 220 DDRNLYRCGDQPRHFAIAMDKFGFRLPYASYFGGVSGLSKAQFLRINGFPNEYWGWGGED 279
Query: 185 DDFSIRTKLSNLQLSRPYEHIGRFKMVKHLRGFRNTEAYWLFLSFRG-----RWPHDGLN 349
DD R L+ +++SRP IGR++M+KH R N F + +W DG+
Sbjct: 280 DDIFNRISLTGMKISRPDVRIGRYRMIKHDRDKHNEPNPQRFNKIQNTKMSMKW--DGIG 337
Query: 350 SLHRLSNLVDIDAFVKKNLSMLTQRSKYIPFKSPYQVLSISKEKLYTNISVRV 508
S+ Y+VL +S++ L+TNI+V +
Sbjct: 338 SVR-------------------------------YRVLEVSRQPLFTNITVDI 359
>sp|Q80WN7|B4GT4_CRIGR Beta-1,4-galactosyltransferase 4 (Beta-1,4-GalTase 4) (Beta4Gal-T4)
(b4Gal-T4) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 4) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 4) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 344
Score = 88.2 bits (217), Expect = 2e-17
Identities = 49/166 (29%), Positives = 77/166 (46%)
Frame = +2
Query: 5 NDLNLYFCDNGVRQISSAIDDTRYHVMFWNNAGGVVSISLKNYLKINGHPNVYWGWGNED 184
ND NLY C + + + + T Y + + GGV ++S + + K+NG N YWGWG ED
Sbjct: 201 NDFNLYTCGDQPKHLVVGRNSTGYRLRYSKYFGGVTALSREQFFKVNGFSNNYWGWGGED 260
Query: 185 DDFSIRTKLSNLQLSRPYEHIGRFKMVKHLRGFRNTEAYWLFLSFRGRWPHDGLNSLHRL 364
DD +R +L +++SRP +G++ M+ H R N D + LH++
Sbjct: 261 DDLRLRVELHKMKISRPNPDVGKYTMIFHTRDKGNEVNV------------DRMKLLHQM 308
Query: 365 SNLVDIDAFVKKNLSMLTQRSKYIPFKSPYQVLSISKEKLYTNISV 502
S + D Y++LS+ LYTNI+V
Sbjct: 309 SRVWKTDGL----------------SSCSYRLLSVEHNPLYTNITV 338
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,104,358
Number of Sequences: 369166
Number of extensions: 1577451
Number of successful extensions: 4253
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4245
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5511356910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)