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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02389
         (261 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q70XV2|NU4C_AMBTC  NAD(P)H-quinone oxidoreductase chain 4...    28   4.9  

>sp|Q70XV2|NU4C_AMBTC NAD(P)H-quinone oxidoreductase chain 4, chloroplast (NAD(P)H
           dehydrogenase, chain 4) (NADH-plastoquinone
           oxidoreductase chain 4)
          Length = 500

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -1

Query: 210 IKLLSLQNNS-YIYPLFMW---YVVDSNSTQLETVTETTSPLQHINSYP*FIMNIRV*IY 43
           I LLS+     Y Y LF     Y VDS   ++  +     P+  I  YP F++++ V   
Sbjct: 431 IYLLSMSRQMFYGYKLFNVPNSYFVDSGpreIFILISILLPVMGIGIYPDFVLSLSV--- 487

Query: 42  **SKINSILKYYVN 1
              K+ +IL  Y N
Sbjct: 488 --DKVEAILANYFN 499

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,084,030
Number of Sequences: 369166
Number of extensions: 524129
Number of successful extensions: 934
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)