Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02376
(623 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 60 3e-09
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 54 3e-07
sp|P57910|FPG_PASMU Formamidopyrimidine-DNA glycosylase (Fa... 29 8.5
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 60.5 bits (145), Expect = 3e-09
Identities = 35/103 (33%), Positives = 51/103 (49%)
Frame = +2
Query: 98 IIIQPGQVKMPQTRRNWSSGLFGCFDDCASCWLTVFFPECYLCYLYHVHDEFVCTPFFVP 277
I+ QPG V+ PQ NW + L CF DC C F C C + +E
Sbjct: 8 IVTQPGFVRAPQNS-NWQTSLCDCFSDCGVCLCGTFCFTCLGCQVAADMNECCLC----- 61
Query: 278 NSTLLLRTKHRGQNIIKGTIMGDCCKAYWCYWCTICQLKRDMD 406
+T+ +RT +R + I G+I D +C C++CQLKRD++
Sbjct: 62 GTTVAMRTLYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDIN 104
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Frame = +2
Query: 98 IIIQPGQVKMPQTRR-NWSSGLFGCFDDCASCWLTVFFPECYLCYLYHVHDEFVCTPFFV 274
++ QPG P + NW +G+ CF DC C F C C + +E
Sbjct: 9 VVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECCLC---- 64
Query: 275 PNSTLLLRTKHRGQNIIKGTIMGDCCKAYWCYWCTICQLKRDMD 406
+++ +RT +R + I G+I D C CT+CQ+KRD++
Sbjct: 65 -GTSVAMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDIN 107
>sp|P57910|FPG_PASMU Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase)
(DNA-(apurinic or apyrimidinic site) lyase mutM) (AP
lyase mutM)
Length = 270
Score = 29.3 bits (64), Expect = 8.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 419 FLQHNPYHVLIGKLYTNSTNRLCNNHP 339
FL N V +G +Y N T LCN HP
Sbjct: 157 FLMDNAVVVGVGNIYANETLFLCNLHP 183
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,858,367
Number of Sequences: 369166
Number of extensions: 1252144
Number of successful extensions: 2708
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2704
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)