Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02362
(377 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic 54 1e-07
sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic (8 k... 52 3e-07
sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic (8 kDa... 52 3e-07
sp|O02414|DYL1_ANTCR Dynein light chain LC6, flagellar oute... 52 6e-07
sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic (8 k... 51 7e-07
sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic (8 k... 51 9e-07
sp|Q39580|DYL1_CHLRE Dynein 8 kDa light chain, flagellar ou... 50 2e-06
sp|Q94758|DYL1_SCHMA Dynein light chain 49 5e-06
sp|Q6FUJ0|DYL1_CANGA Dynein light chain 1, cytoplasmic 48 6e-06
sp|Q94748|DYL2_SCHMA Probable dynein light chain (T-cell-st... 47 2e-05
>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic
Length = 89
Score = 53.9 bits (128), Expect = 1e-07
Identities = 25/77 (32%), Positives = 41/77 (53%)
Frame = +2
Query: 56 SDDEGQRISEIVADVFQALETSAERAKEIKSRLDREFDGSWQCIVGKNFATYVSHEEHKF 235
SDD Q + + + A IK D++++ +W CIVG+NF +YV+HE F
Sbjct: 14 SDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHF 73
Query: 236 CHLKVGNQTGVQVFKAG 286
+ +G Q + +FK+G
Sbjct: 74 IYFYLG-QVAILLFKSG 89
>sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic (8 kDa dynein light chain) (DLC8)
(DLC8b)
sp|Q96FJ2|DYL2_HUMAN Dynein light chain 2, cytoplasmic
sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic
Length = 89
Score = 52.4 bits (124), Expect = 3e-07
Identities = 24/77 (31%), Positives = 41/77 (53%)
Frame = +2
Query: 56 SDDEGQRISEIVADVFQALETSAERAKEIKSRLDREFDGSWQCIVGKNFATYVSHEEHKF 235
S+D Q + + + A IK D++++ +W CIVG+NF +YV+HE F
Sbjct: 14 SEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHF 73
Query: 236 CHLKVGNQTGVQVFKAG 286
+ +G Q + +FK+G
Sbjct: 74 IYFYLG-QVAILLFKSG 89
>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN)
sp|P63167|DYL1_HUMAN Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN)
sp|P63168|DYL1_MOUSE Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN) (mPIN)
sp|P61285|DYL1_BOVIN Dynein light chain 1, cytoplasmic
sp|P61273|DYL1_MACFA Dynein light chain 1, cytoplasmic
sp|P63169|DYL1_RABIT Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN)
Length = 89
Score = 52.4 bits (124), Expect = 3e-07
Identities = 24/77 (31%), Positives = 41/77 (53%)
Frame = +2
Query: 56 SDDEGQRISEIVADVFQALETSAERAKEIKSRLDREFDGSWQCIVGKNFATYVSHEEHKF 235
S++ Q E + + A IK D++++ +W CIVG+NF +YV+HE F
Sbjct: 14 SEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHF 73
Query: 236 CHLKVGNQTGVQVFKAG 286
+ +G Q + +FK+G
Sbjct: 74 IYFYLG-QVAILLFKSG 89
>sp|O02414|DYL1_ANTCR Dynein light chain LC6, flagellar outer arm
Length = 89
Score = 51.6 bits (122), Expect = 6e-07
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +2
Query: 59 DDEGQRISEIVADVFQALETSAERAKEIKSRLDREFDGSWQCIVGKNFATYVSHEEHKFC 238
+D Q + + + A IK D++++ +W CIVG+NF +YV+HE F
Sbjct: 15 EDMQQDAVDCATQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFI 74
Query: 239 HLKVGNQTGVQVFKAG 286
+ +G Q V +FK+G
Sbjct: 75 YFYLG-QVAVLLFKSG 89
>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (Cut
up protein)
Length = 89
Score = 51.2 bits (121), Expect = 7e-07
Identities = 23/77 (29%), Positives = 41/77 (53%)
Frame = +2
Query: 56 SDDEGQRISEIVADVFQALETSAERAKEIKSRLDREFDGSWQCIVGKNFATYVSHEEHKF 235
S++ Q + + + A IK D++++ +W CIVG+NF +YV+HE F
Sbjct: 14 SEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHF 73
Query: 236 CHLKVGNQTGVQVFKAG 286
+ +G Q + +FK+G
Sbjct: 74 IYFYLG-QVAILLFKSG 89
>sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic (8 kDa dynein light chain)
Length = 89
Score = 50.8 bits (120), Expect = 9e-07
Identities = 23/77 (29%), Positives = 41/77 (53%)
Frame = +2
Query: 56 SDDEGQRISEIVADVFQALETSAERAKEIKSRLDREFDGSWQCIVGKNFATYVSHEEHKF 235
S++ Q + + + A IK D++++ +W CIVG+NF +YV+HE F
Sbjct: 14 SEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHF 73
Query: 236 CHLKVGNQTGVQVFKAG 286
+ +G Q + +FK+G
Sbjct: 74 IYFYLG-QVAILLFKSG 89
>sp|Q39580|DYL1_CHLRE Dynein 8 kDa light chain, flagellar outer arm
Length = 91
Score = 50.1 bits (118), Expect = 2e-06
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +2
Query: 104 QALET---SAERAKEIKSRLDREFDGSWQCIVGKNFATYVSHEEHKFCHLKVGNQTGVQV 274
QALE + A IK DR+ + +W CIVG+NF +YV+HE F + +G Q + +
Sbjct: 29 QALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLG-QVAILL 87
Query: 275 FKAG 286
FK+G
Sbjct: 88 FKSG 91
>sp|Q94758|DYL1_SCHMA Dynein light chain
Length = 89
Score = 48.5 bits (114), Expect = 5e-06
Identities = 23/77 (29%), Positives = 42/77 (54%)
Frame = +2
Query: 56 SDDEGQRISEIVADVFQALETSAERAKEIKSRLDREFDGSWQCIVGKNFATYVSHEEHKF 235
S++ + I A + + A IK DR++ +W CIVG++F +YV+HE H F
Sbjct: 14 SEEMQEDAIHIAAGAIDKHDLEKDIAANIKKDFDRKYHPTWHCIVGRHFGSYVTHETHNF 73
Query: 236 CHLKVGNQTGVQVFKAG 286
+ + ++ + +FK+G
Sbjct: 74 IYFYLDDRAFL-LFKSG 89
>sp|Q6FUJ0|DYL1_CANGA Dynein light chain 1, cytoplasmic
Length = 86
Score = 48.1 bits (113), Expect = 6e-06
Identities = 22/74 (29%), Positives = 38/74 (51%)
Frame = +2
Query: 32 VAIEVNRCSDDEGQRISEIVADVFQALETSAERAKEIKSRLDREFDGSWQCIVGKNFATY 211
V ++ + D+ Q + I + + E A IK +D + +W IVG++F +Y
Sbjct: 4 VIVKASDMGDEMQQEVFRIAEEAMREHTLEREIASVIKKEMDSRYGHTWHVIVGRSFGSY 63
Query: 212 VSHEEHKFCHLKVG 253
V+HE+ KF + VG
Sbjct: 64 VTHEKGKFVYFYVG 77
>sp|Q94748|DYL2_SCHMA Probable dynein light chain (T-cell-stimulating antigen SM10)
Length = 89
Score = 46.6 bits (109), Expect = 2e-05
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = +2
Query: 59 DDEGQRISEIVADVFQALETSAERAKEIKSRLDREFDGSWQCIVGKNFATYVSHEEHKFC 238
+D + A E + A IK DR+++ +W CIVGK+F +YV+HE F
Sbjct: 15 EDMQETAVHTAAAALDKYEIEKDVAAYIKKEFDRKYNPNWHCIVGKHFGSYVTHETQHFI 74
Query: 239 HLKVGNQTGVQVFKAG 286
+ + + +FK+G
Sbjct: 75 YFYL-QERAFLLFKSG 89
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,685,052
Number of Sequences: 369166
Number of extensions: 705244
Number of successful extensions: 2016
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2016
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)