Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02344
(790 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q86WC4|OSTM1_HUMAN Osteopetrosis associated transmembran... 32 2.0
sp|Q8BGE7|TRIM6_MOUSE Tripartite motif protein 6 31 4.4
sp|Q14767|LTBP2_HUMAN Latent transforming growth factor-bet... 30 5.8
sp|Q9RFY6|CDTA_HELHP Cytolethal distending toxin subunit A ... 30 7.5
sp|Q28019|LTBP2_BOVIN Latent transforming growth factor-bet... 30 7.5
sp|P17005|HEMA_INCNA Hemagglutinin-esterase precursor [Cont... 30 7.5
sp|P07970|HEMA_INCMI Hemagglutinin-esterase precursor [Cont... 30 7.5
sp|P17004|HEMA_INCKY Hemagglutinin-esterase precursor [Cont... 30 7.5
sp|P17003|HEMA_INCHY Hemagglutinin-esterase precursor [Cont... 30 7.5
sp|P81921|OR47A_DROME Odorant receptor 47a 30 9.9
>sp|Q86WC4|OSTM1_HUMAN Osteopetrosis associated transmembrane protein 1 precursor
Length = 334
Score = 32.0 bits (71), Expect = 2.0
Identities = 25/121 (20%), Positives = 50/121 (41%)
Frame = +2
Query: 41 SSFKDICNRGGHSFEPIQCLRFIIQNVCDKSCLLLMNNFNIFQNDSTTISTIPDLSQSCS 220
S +I G++ E C R ++ + ++L FN ++ + + + S+ S
Sbjct: 124 SKMDNISRAAGNTSESQSCARSLLMADRMQIVVILSEFFNTTWQEANCANCLTNNSEELS 183
Query: 221 KTTIICLTVFFVIFLLVSIGLTANKIIPASLNTRQL*NSCKHLRKMIKRIKQAW*EIVKI 400
+T+ L +F L N + L T+ CK+ R+ K + + E+ K+
Sbjct: 184 NSTVYFLNLFNHTLTCFEHNLQGNA--HSLLQTKNYSEVCKNCREAYKTLSSLYSEMQKM 241
Query: 401 N 403
N
Sbjct: 242 N 242
>sp|Q8BGE7|TRIM6_MOUSE Tripartite motif protein 6
Length = 488
Score = 30.8 bits (68), Expect = 4.4
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -1
Query: 748 VTNHSLVIFDYNCYYNFPAEYCLYFVLNSLYCCICIV 638
VTNH L I+ ++ YY FP+ C YF C CIV
Sbjct: 449 VTNHGLPIYTFSKYY-FPSALCPYF-----NPCSCIV 479
>sp|Q14767|LTBP2_HUMAN Latent transforming growth factor-beta-binding protein 2 precursor
(LTBP-2)
Length = 1821
Score = 30.4 bits (67), Expect = 5.8
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 406 IKTPQSLWTTCL-ELCNKKNSNFEPTLCKQFVTEGNCSKAC 525
++ P S W L E K F PT+CKQ G+C+ +C
Sbjct: 333 LEHPSSPWGLNLTEKIKKIKIVFTPTICKQTCARGHCANSC 373
>sp|Q9RFY6|CDTA_HELHP Cytolethal distending toxin subunit A precursor (CDT A)
Length = 231
Score = 30.0 bits (66), Expect = 7.5
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +2
Query: 107 IIQNVCDKSCLLLMNNFNIFQNDSTTISTIPDLSQSCSKTTIICLTVFFVIFL 265
+I ++CD + N N F N + I ++ +++C +T + T ++ I+L
Sbjct: 152 VIHDICDSKNQAQLWNLNFFDNQAIQIQSVS--AKTCLQTPTVRTTTYYSIYL 202
>sp|Q28019|LTBP2_BOVIN Latent transforming growth factor-beta-binding protein 2 precursor
(LTBP-2)
Length = 1842
Score = 30.0 bits (66), Expect = 7.5
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 415 PQSLWTTCL-ELCNKKNSNFEPTLCKQFVTEGNCSKAC 525
P S W L E K F PT+CKQ G C+ +C
Sbjct: 324 PSSSWGLNLTEKIKKIKIVFTPTICKQTCARGRCANSC 361
>sp|P17005|HEMA_INCNA Hemagglutinin-esterase precursor [Contains: Hemagglutinin chain 1
(HE1); Hemagglutinin chain 2 (HE2)]
Length = 641
Score = 30.0 bits (66), Expect = 7.5
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 14 NITVVPSLFSSFKDICNRGGHSFEPIQCLRFIIQN-VCDKSCLLLMNNFNIFQNDSTTIS 190
+I + SL+ +I NR G I +II N +CD+SC NF N++ +
Sbjct: 540 SIGLQESLWELASEITNRAGDLAVEISPGCWIIDNNICDQSC----QNFIFKFNETAPVP 595
Query: 191 TIPDL 205
TIP L
Sbjct: 596 TIPPL 600
>sp|P07970|HEMA_INCMI Hemagglutinin-esterase precursor [Contains: Hemagglutinin chain 1
(HE1); Hemagglutinin chain 2 (HE2)]
Length = 641
Score = 30.0 bits (66), Expect = 7.5
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 14 NITVVPSLFSSFKDICNRGGHSFEPIQCLRFIIQN-VCDKSCLLLMNNFNIFQNDSTTIS 190
+I + SL+ +I NR G I +II N +CD+SC NF N++ +
Sbjct: 540 SIGLQESLWELASEITNRAGDLAVEISPGCWIIDNNICDQSC----QNFIFKFNETAPVP 595
Query: 191 TIPDL 205
TIP L
Sbjct: 596 TIPPL 600
>sp|P17004|HEMA_INCKY Hemagglutinin-esterase precursor [Contains: Hemagglutinin chain 1
(HE1); Hemagglutinin chain 2 (HE2)]
Length = 641
Score = 30.0 bits (66), Expect = 7.5
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 14 NITVVPSLFSSFKDICNRGGHSFEPIQCLRFIIQN-VCDKSCLLLMNNFNIFQNDSTTIS 190
+I + SL+ +I NR G I +II N +CD+SC NF N++ +
Sbjct: 540 SIGLQESLWELASEITNRAGDLAVEISPGCWIIDNNICDQSC----QNFIFKFNETAPVP 595
Query: 191 TIPDL 205
TIP L
Sbjct: 596 TIPPL 600
>sp|P17003|HEMA_INCHY Hemagglutinin-esterase precursor [Contains: Hemagglutinin chain 1
(HE1); Hemagglutinin chain 2 (HE2)]
Length = 641
Score = 30.0 bits (66), Expect = 7.5
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 14 NITVVPSLFSSFKDICNRGGHSFEPIQCLRFIIQN-VCDKSCLLLMNNFNIFQNDSTTIS 190
+I + SL+ +I NR G I +II N +CD+SC NF N++ +
Sbjct: 540 SIGLQESLWELASEITNRAGDLAVEISPGCWIIDNNICDQSC----QNFIFKFNETAPVP 595
Query: 191 TIPDL 205
TIP L
Sbjct: 596 TIPPL 600
>sp|P81921|OR47A_DROME Odorant receptor 47a
Length = 385
Score = 29.6 bits (65), Expect = 9.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 421 SLWTTCLELCNKKNSNFEPTLCKQF 495
+L+ T L++CN N ++P +C QF
Sbjct: 238 ALYQTSLDMCNDLNQCYQPIICAQF 262
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,101,900
Number of Sequences: 369166
Number of extensions: 1469070
Number of successful extensions: 4518
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4515
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7454154400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)