Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02316
(765 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UMS4|PRP19_HUMAN PRP19/PSO4 homolog (Nuclear matrix pr... 243 4e-64
sp|Q99KP6|PRP19_MOUSE PRP19/PSO4 homolog (Nuclear matrix pr... 243 5e-64
sp|Q9JMJ4|PRP19_RAT PRP19/PSO4 homolog (Neuronal differenti... 242 9e-64
sp|Q10051|PRP19_CAEEL PRP19/PSO4 homolog 199 7e-51
sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466 91 3e-18
sp|Q8YV57|Y2124_ANASP Hypothetical WD-repeat protein all2124 86 8e-17
sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40-containing subunit B... 81 3e-15
sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40-containing subunit B... 81 3e-15
sp|O22212|PRP4_ARATH U4/U6 small nuclear ribonucleoprotein ... 81 4e-15
sp|Q7ZUV2|KTNB1_BRARE Katanin p80 WD40-containing subunit B... 81 4e-15
>sp|Q9UMS4|PRP19_HUMAN PRP19/PSO4 homolog (Nuclear matrix protein 200) (hPso4)
Length = 504
Score = 243 bits (620), Expect = 4e-64
Identities = 116/239 (48%), Positives = 168/239 (70%)
Frame = +3
Query: 3 VYHNTDEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCW 182
V+H + ++ +ASPD+TIR+W + +ASC V+RAH +VTGLSLHATG+Y+LSS +D W
Sbjct: 271 VFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYW 330
Query: 183 AFSDIYSGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAF 362
AFSDI +G+V+ + + + SLTC + HPDGLI TGT D ++ IW+LKE VA
Sbjct: 331 AFSDIQTGRVLTK---VTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVAN 387
Query: 363 LPHTTNGSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEF 542
P +G + +AFSENG+YLAT D +KLWDLRK+++FKTL + ++++ L F
Sbjct: 388 FP-GHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDN---NFEVKSLIF 443
Query: 543 DNSGSYLGVAGTDVRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKLY 719
D SG+YL + GTDV++Y+ KQW +++F+ HSGL TG+ FG +A I S+ +DR++K Y
Sbjct: 444 DQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFY 502
>sp|Q99KP6|PRP19_MOUSE PRP19/PSO4 homolog (Nuclear matrix protein 200) (Nuclear matrix
protein SNEV)
Length = 504
Score = 243 bits (619), Expect = 5e-64
Identities = 116/239 (48%), Positives = 167/239 (69%)
Frame = +3
Query: 3 VYHNTDEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCW 182
V+H + E+ +ASPD+TIR+W + + SC V+RAH +VTGLSLHATG+Y+LSS +D W
Sbjct: 271 VFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYW 330
Query: 183 AFSDIYSGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAF 362
AFSDI +G+V+ + + + SLTC + HPDGLI TGT D ++ IW+LKE VA
Sbjct: 331 AFSDIQTGRVLTK---VTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVAN 387
Query: 363 LPHTTNGSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEF 542
P +G + +AFSENG+YLAT D +KLWDLRK+++FKTL + ++++ L F
Sbjct: 388 FP-GHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDN---NFEVKSLIF 443
Query: 543 DNSGSYLGVAGTDVRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKLY 719
D SG+YL + GTDV++Y+ KQW +++F+ HSGL TG+ FG +A I S+ +DR++K Y
Sbjct: 444 DQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFY 502
>sp|Q9JMJ4|PRP19_RAT PRP19/PSO4 homolog (Neuronal differentiation-related gene protein)
Length = 504
Score = 242 bits (617), Expect = 9e-64
Identities = 116/239 (48%), Positives = 166/239 (69%)
Frame = +3
Query: 3 VYHNTDEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCW 182
V+H + E+ +ASPD+TIR+W + + SC V+RAH +VTGLSLHATG+Y+LSS +D W
Sbjct: 271 VFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYW 330
Query: 183 AFSDIYSGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAF 362
AFSDI +G+V+ + + + SLTC + HPDGLI TGT D + IW+LKE VA
Sbjct: 331 AFSDIQTGRVLTK---VTDETSGCSLTCAQFHPDGLIFGTGTMDSHIKIWDLKERTNVAN 387
Query: 363 LPHTTNGSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEF 542
P +G + +AFSENG+YLAT D +KLWDLRK+++FKTL + ++++ L F
Sbjct: 388 FP-GHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDN---NFEVKSLIF 443
Query: 543 DNSGSYLGVAGTDVRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKLY 719
D SG+YL + GTDV++Y+ KQW +++F+ HSGL TG+ FG +A I S+ +DR++K Y
Sbjct: 444 DQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFY 502
>sp|Q10051|PRP19_CAEEL PRP19/PSO4 homolog
Length = 492
Score = 199 bits (506), Expect = 7e-51
Identities = 105/239 (43%), Positives = 153/239 (64%)
Frame = +3
Query: 3 VYHNTDEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCW 182
V H + A++AS DS IRVW D+S +I H VT +SL+A+G+Y+LS+ +D W
Sbjct: 258 VLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPVTDISLNASGDYILSASDDSYW 317
Query: 183 AFSDIYSGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAF 362
AFSDI SGK + + S+ I ++ ++ HPDGLI TG D V IW+LK A
Sbjct: 318 AFSDIRSGKSLCK-VSVEPGSQI-AVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAA 375
Query: 363 LPHTTNGSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEF 542
P T +V+ +AFSENG+YLATG DG +KLWDLRK+++ KT + + IN L F
Sbjct: 376 FPGHT-AAVRSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTFANEEKQP---INSLSF 431
Query: 543 DNSGSYLGVAGTDVRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKLY 719
D +G++LG+ G V+V K W VV+ S HSG TG+RFGENA ++++ S+D++++++
Sbjct: 432 DMTGTFLGIGGQKVQVLHVKSWSEVVSLSDHSGPVTGVRFGENARSLVTCSLDKSLRVF 490
>sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466
Length = 1526
Score = 90.9 bits (224), Expect = 3e-18
Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 5/234 (2%)
Frame = +3
Query: 33 TASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWAFSDIYSGKV 212
T S D T+R+W I + C ++ + HT V + + G + S +D DI SG
Sbjct: 1007 TGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNC 1066
Query: 213 IMRHQSLNKSDAIQSLTCMKS---HPDGLICATGTDDGEVSIWNLKEVKKVAFLPHTTNG 383
+ Q +C++S PDG + A+G DD V +W++ + L T+
Sbjct: 1067 LYTLQG--------HTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSW 1118
Query: 384 SVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEFDNSGSYL 563
V+ L FS NG LA G SD +++LWD+ + TL T++ +N + F G+ L
Sbjct: 1119 -VRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTL---QGHTNW-VNAVAFSPDGATL 1173
Query: 564 GVAGTD--VRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKLY 719
D VR++ + + H+ + F + +T+ S S D+TV+L+
Sbjct: 1174 ASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLW 1227
Score = 88.6 bits (218), Expect = 2e-17
Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 2/241 (0%)
Frame = +3
Query: 3 VYHNTDEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCW 182
V+ + + + S D T+R+W I +C + ++ HT V + G + S G+D
Sbjct: 1039 VFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIV 1098
Query: 183 AFSDIYSGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAF 362
DI SG + Q + + P+G+ A G+ D V +W++ K +
Sbjct: 1099 RLWDISSGNCLYTLQGYT-----SWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYT 1153
Query: 363 LPHTTNGSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEF 542
L TN V +AFS +G LA+G D ++LWD + K L T + +N + F
Sbjct: 1154 LQGHTNW-VNAVAFSPDGATLASGSGDQTVRLWD---ISSSKCLYILQGHTSW-VNSVVF 1208
Query: 543 DNSGSYLGVAGTD--VRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKL 716
+ GS L +D VR++ + + F H+ + F + + + S S D+TV+L
Sbjct: 1209 NPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRL 1268
Query: 717 Y 719
+
Sbjct: 1269 W 1269
Score = 85.5 bits (210), Expect = 1e-16
Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 3/242 (1%)
Frame = +3
Query: 3 VYHNTDEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCW 182
V++ + + S D T+R+W I + C H + HT V ++ + G+ + S D
Sbjct: 1249 VFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTV 1308
Query: 183 AFSDIYSGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKV-A 359
+I S K + H + + S+T PDG + A+G+DD V +W++ + +
Sbjct: 1309 RLWEISSSKCL--HTFQGHTSWVSSVT---FSPDGTMLASGSDDQTVRLWSISSGECLYT 1363
Query: 360 FLPHTTNGSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLE 539
FL HT V + FS +G LA+G D ++LW + + TL ++ + +
Sbjct: 1364 FLGHT--NWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNN----WVGSIV 1417
Query: 540 FDNSGSYLGVAGTD--VRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVK 713
F G+ L D VR++ E + H + F + + S S D T+K
Sbjct: 1418 FSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIK 1477
Query: 714 LY 719
L+
Sbjct: 1478 LW 1479
Score = 83.2 bits (204), Expect = 7e-16
Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 5/244 (2%)
Frame = +3
Query: 3 VYHNTDEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCW 182
V+ + + S D T+R+W I C ++ + HTG V ++ + G+ + + D
Sbjct: 955 VFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTV 1014
Query: 183 AFSDIYSGK---VIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKK 353
DI S + + H S +S S DG + A+G+DD V +W++
Sbjct: 1015 RLWDISSSQCFYIFQGHTSCVRSVVFSS--------DGAMLASGSDDQTVRLWDISSGNC 1066
Query: 354 VAFLPHTTNGSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQIND 533
+ L T+ V+ + FS +G LA+GG D +++LWD+ TL +
Sbjct: 1067 LYTLQGHTS-CVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRF---- 1121
Query: 534 LEFDNSGSYLGVAGTD--VRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRT 707
L F +G L +D VR++ + + H+ + F + T+ S S D+T
Sbjct: 1122 LVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQT 1181
Query: 708 VKLY 719
V+L+
Sbjct: 1182 VRLW 1185
Score = 76.6 bits (187), Expect = 7e-14
Identities = 49/154 (31%), Positives = 71/154 (46%)
Frame = +3
Query: 33 TASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWAFSDIYSGKV 212
+ S D T+R+W I C + HT V + G + S D I SGK
Sbjct: 1343 SGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKC 1402
Query: 213 IMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAFLPHTTNGSVQ 392
+ Q N + + PDG + A+G+DD V +WN+ + + L H SV+
Sbjct: 1403 LYTLQGHNNW-----VGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTL-HGHINSVR 1456
Query: 393 CLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTL 494
+AFS +G LA+G D IKLWD++ KTL
Sbjct: 1457 SVAFSSDGLILASGSDDETIKLWDVKTGECIKTL 1490
Score = 75.5 bits (184), Expect = 1e-13
Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 3/242 (1%)
Frame = +3
Query: 3 VYHNTDEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCW 182
V++ + S D T+R+W+I + C + HT V + + G+ + S +D
Sbjct: 1207 VFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTV 1266
Query: 183 AFSDIYSGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKV-A 359
DI S K + H ++ + S+ +PDG + A+G+ D V +W + K +
Sbjct: 1267 RLWDISSSKCL--HTFQGHTNWVNSVA---FNPDGSMLASGSGDQTVRLWEISSSKCLHT 1321
Query: 360 FLPHTTNGSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLE 539
F HT+ V + FS +G LA+G D ++LW + T T++ + +
Sbjct: 1322 FQGHTS--WVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFL---GHTNW-VGSVI 1375
Query: 540 FDNSGSYLGVAGTD--VRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVK 713
F G+ L D VR++ + + H+ I F + + S S D+TV+
Sbjct: 1376 FSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVR 1435
Query: 714 LY 719
L+
Sbjct: 1436 LW 1437
Score = 67.4 bits (163), Expect = 4e-11
Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 4/237 (1%)
Frame = +3
Query: 21 EIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWAFSDIY 200
++ + S D T+R+W I C + HT V + + S +D DI
Sbjct: 919 KMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDIS 978
Query: 201 SGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVK-KVAFLPHTT 377
SG+ + Q + + S+ + DG + ATG+ D V +W++ + F HT+
Sbjct: 979 SGECLYIFQ--GHTGWVYSVA---FNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTS 1033
Query: 378 NGSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQ-INDLEFDNSG 554
V+ + FS +G LA+G D ++LWD+ TL + H + + F G
Sbjct: 1034 --CVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTL-----QGHTSCVRSVVFSPDG 1086
Query: 555 SYLGVAGTD--VRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKLY 719
+ L G D VR++ + ++ + F N T+ + S D+ V+L+
Sbjct: 1087 AMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLW 1143
Score = 56.6 bits (135), Expect = 7e-08
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Frame = +3
Query: 279 PDGLICATGTDDGEVSIWNLKEVKKVAFLPHTTNGSVQCLAFSENGFYLATGGSDGLIKL 458
PDG + ATG G V W K++ N V + FS++G LA+G D ++L
Sbjct: 874 PDGKLFATGDSGGIVRFWEAATGKELLTCKGH-NSWVNSVGFSQDGKMLASGSDDQTVRL 932
Query: 459 WDLRKVRDFKTLTPGDDRTHYQINDLEFDNSGSYLGVAGTD--VRVYLSKQWERVVNFSA 632
WD+ + KT R + + F + L +D VR++ E + F
Sbjct: 933 WDISSGQCLKTFKGHTSR----VRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQG 988
Query: 633 HSGLATGIRFGENANTIISSSIDRTVKLY 719
H+G + F + + + + S D+TV+L+
Sbjct: 989 HTGWVYSVAFNLDGSMLATGSGDQTVRLW 1017
Score = 49.3 bits (116), Expect = 1e-05
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Frame = +3
Query: 381 GSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEFDNSGSY 560
GSV +AFS +G ATG S G+++ W+ ++ T + +N + F G
Sbjct: 865 GSVLTVAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNS----WVNSVGFSQDGKM 920
Query: 561 LGVAGTD--VRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKLY 719
L D VR++ + + F H+ + F N+ + S S D+TV+L+
Sbjct: 921 LASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLW 975
Score = 37.7 bits (86), Expect = 0.034
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +3
Query: 3 VYHNTDEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCW 182
V+ + + S D T+R+W I C + + H SV ++ + G + S +D
Sbjct: 1417 VFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETI 1476
Query: 183 AFSDIYSGKVI 215
D+ +G+ I
Sbjct: 1477 KLWDVKTGECI 1487
>sp|Q8YV57|Y2124_ANASP Hypothetical WD-repeat protein all2124
Length = 1683
Score = 86.3 bits (212), Expect = 8e-17
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 7/232 (3%)
Frame = +3
Query: 45 DSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWAFSDIYSGKVIMRH 224
D TI++W+ D + I H +V + G + S+ +D D SG+++M
Sbjct: 1134 DKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSGQLLM-- 1191
Query: 225 QSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAFLPHTTNGS---VQC 395
+L A + ++ PDG A G++D V +W+ ++ K L T NG V
Sbjct: 1192 -TLTGHSA--GVITVRFSPDGQTIAAGSEDKTVKLWHRQDGK----LLKTLNGHQDWVNS 1244
Query: 396 LAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEFDNSGSYLGVAG 575
L+FS +G LA+ +D IKLW + + KTL +D + D+ F + G + A
Sbjct: 1245 LSFSPDGKTLASASADKTIKLWRIADGKLVKTLKGHND----SVWDVNFSSDGKAIASAS 1300
Query: 576 TDVRVYLSKQWER----VVNFSAHSGLATGIRFGENANTIISSSIDRTVKLY 719
D + K W R + F+ HSG + F ++N I S+S+D T++L+
Sbjct: 1301 RDNTI---KLWNRHGIELETFTGHSGGVYAVNFLPDSNIIASASLDNTIRLW 1349
Score = 75.1 bits (183), Expect = 2e-13
Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 7/242 (2%)
Frame = +3
Query: 24 IAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGC---WAFSD 194
I TA D I++W +D S + + ++ G+S G+ + S+ D W D
Sbjct: 1377 IIATAGADGNIQLWHSQDGSLLKTLPGNK-AIYGISFTPQGDLIASANADKTVKIWRVRD 1435
Query: 195 IYSGKVIMRHQS-LNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVK-KVAFLP 368
+ K ++ H + +NK + PDG A+ + D V +WN+ + K K
Sbjct: 1436 GKALKTLIGHDNEVNK---------VNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKG 1486
Query: 369 HTTNGSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEFDN 548
HT V ++FS +G +A+ +D I+LWD K+L +D Y +N F+
Sbjct: 1487 HTDE--VFWVSFSPDGKIIASASADKTIRLWDSFSGNLIKSLPAHNDLV-YSVN---FNP 1540
Query: 549 SGSYLGVAGTD--VRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKLYG 722
GS L D V+++ S + FS HS + F + I S+S D+TVK++
Sbjct: 1541 DGSMLASTSADKTVKLWRSHDGHLLHTFSGHSNVVYSSSFSPDGRYIASASEDKTVKIWQ 1600
Query: 723 SD 728
D
Sbjct: 1601 ID 1602
Score = 74.3 bits (181), Expect = 3e-13
Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 2/231 (0%)
Frame = +3
Query: 33 TASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWAFSDIYSGKV 212
+AS D TI++W+I D ++ H SV ++ + G + S+ D +++
Sbjct: 1256 SASADKTIKLWRIADGKLVKTLKGHNDSVWDVNFSSDGKAIASASRDNT---IKLWNRHG 1312
Query: 213 IMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAFLPHTTNGSVQ 392
I S + ++ + PD I A+ + D + +W + + L N V
Sbjct: 1313 IELETFTGHSGGVYAVNFL---PDSNIIASASLDNTIRLWQRPLISPLEVL--AGNSGVY 1367
Query: 393 CLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEFDNSGSYLGVA 572
++F +G +AT G+DG I+LW + KTL PG+ I + F G + A
Sbjct: 1368 AVSFLHDGSIIATAGADGNIQLWHSQDGSLLKTL-PGNK----AIYGISFTPQGDLIASA 1422
Query: 573 GTD--VRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKLY 719
D V+++ + + + H + F + T+ S+S D TVKL+
Sbjct: 1423 NADKTVKIWRVRDGKALKTLIGHDNEVNKVNFSPDGKTLASASRDNTVKLW 1473
Score = 73.2 bits (178), Expect = 7e-13
Identities = 63/236 (26%), Positives = 110/236 (46%), Gaps = 2/236 (0%)
Frame = +3
Query: 24 IAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWAFSDIYS 203
I +AS D+TIR+W+ S V+ ++G LH G+ + ++G DG
Sbjct: 1336 IIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVSFLH-DGSIIATAGADGNIQLWHSQD 1394
Query: 204 GKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAFLPHTTNG 383
G ++ ++L + AI ++ P G + A+ D V IW +++ K + L N
Sbjct: 1395 GSLL---KTLPGNKAIYGISFT---PQGDLIASANADKTVKIWRVRDGKALKTLIGHDN- 1447
Query: 384 SVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEFDNSGSYL 563
V + FS +G LA+ D +KLW++ + KTL D + + F G +
Sbjct: 1448 EVNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFW----VSFSPDGKII 1503
Query: 564 GVAGTD--VRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKLYGS 725
A D +R++ S + + AH+ L + F + + + S+S D+TVKL+ S
Sbjct: 1504 ASASADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRS 1559
Score = 64.7 bits (156), Expect = 3e-10
Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
Frame = +3
Query: 282 DGLICATGTDDGEVSIWNLKEVKKVAFLPHTTNG---SVQCLAFSENGFYLATGGSDGLI 452
DG A+G+ D + +W+ + L T NG +V ++FS +G +A+GGSD I
Sbjct: 1083 DGQTIASGSLDKTIKLWS-----RDGRLFRTLNGHEDAVYSVSFSPDGQTIASGGSDKTI 1137
Query: 453 KLWDLRKVRDFKTLTPGDDRTHYQINDLEFDNSGSYLGVAGTD--VRVYLSKQWERVVNF 626
KLW KT+T G ++T +N++ F G L A +D ++++ + + ++
Sbjct: 1138 KLWQTSDGTLLKTIT-GHEQT---VNNVYFSPDGKNLASASSDHSIKLWDTTSGQLLMTL 1193
Query: 627 SAHSGLATGIRFGENANTIISSSIDRTVKLY 719
+ HS +RF + TI + S D+TVKL+
Sbjct: 1194 TGHSAGVITVRFSPDGQTIAAGSEDKTVKLW 1224
Score = 52.4 bits (124), Expect = 1e-06
Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 9/217 (4%)
Frame = +3
Query: 96 IRAHTGSVTGLSLHATGNYVLSSGNDGC---WAFSDIYSGKVIMRHQSLN-KSDAIQSLT 263
+ H V +S+ G + S D W+ G++ ++LN DA+ S++
Sbjct: 1068 LEGHKDGVISISISRDGQTIASGSLDKTIKLWS----RDGRLF---RTLNGHEDAVYSVS 1120
Query: 264 CMKSHPDGLICATGTDDGEVSIWNLKE---VKKVAFLPHTTNGSVQCLAFSENGFYLATG 434
PDG A+G D + +W + +K + T N + FS +G LA+
Sbjct: 1121 FS---PDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNN----VYFSPDGKNLASA 1173
Query: 435 GSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEFDNSGSYLGVAGTD--VRVYLSKQW 608
SD IKLWD + TLT + + F G + D V+++ +
Sbjct: 1174 SSDHSIKLWDTTSGQLLMTLTGHS----AGVITVRFSPDGQTIAAGSEDKTVKLWHRQDG 1229
Query: 609 ERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKLY 719
+ + + H + F + T+ S+S D+T+KL+
Sbjct: 1230 KLLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLW 1266
Score = 46.6 bits (109), Expect = 7e-05
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 3/150 (2%)
Frame = +3
Query: 21 EIAVTASPDSTIRVWKIEDASCGHVIR---AHTGSVTGLSLHATGNYVLSSGNDGCWAFS 191
+I +AS D TIR+W D+ G++I+ AH V ++ + G+ + S+ D
Sbjct: 1501 KIIASASADKTIRLW---DSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLW 1557
Query: 192 DIYSGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAFLPH 371
+ G ++ H S+ + S PDG A+ ++D V IW + + + LP
Sbjct: 1558 RSHDGHLL--HTFSGHSNVVYS---SSFSPDGRYIASASEDKTVKIWQI-DGHLLTTLPQ 1611
Query: 372 TTNGSVQCLAFSENGFYLATGGSDGLIKLW 461
G V FS +G L +G D K+W
Sbjct: 1612 HQAG-VMSAIFSPDGKTLISGSLDTTTKIW 1640
>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1)
(p80 katanin)
Length = 658
Score = 81.3 bits (199), Expect = 3e-15
Identities = 47/152 (30%), Positives = 72/152 (47%)
Frame = +3
Query: 18 DEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWAFSDI 197
+E+ V S +IRVW +E A + H ++ L H G +V S D DI
Sbjct: 75 EELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDI 134
Query: 198 YSGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAFLPHTT 377
+ R++ + Q++ C++ PDG A+ DD V +W+L K ++ P T
Sbjct: 135 RRKGCVFRYRGHS-----QAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHT 189
Query: 378 NGSVQCLAFSENGFYLATGGSDGLIKLWDLRK 473
G V + F N + LA+G SD I+ WDL K
Sbjct: 190 -GPVNVVEFHPNEYLLASGSSDRTIRFWDLEK 220
Score = 70.5 bits (171), Expect = 5e-12
Identities = 68/241 (28%), Positives = 107/241 (44%), Gaps = 13/241 (5%)
Frame = +3
Query: 36 ASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWAFSDIYSGKVI 215
A+P T WK+++ I AH +V+ L L +L++G D C
Sbjct: 2 ATPVVTKTAWKLQE------IVAHASNVSSLVLGKASGRLLATGGDDC-----------R 44
Query: 216 MRHQSLNKSDAIQSLTCMKS--------HPDGLICATGTDDGEVSIWNLKEVKKV-AFLP 368
+ S+NK + I SLT S P+ LI A G+ G + +W+L+ K + +
Sbjct: 45 VNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVA-GSQSGSIRVWDLEAAKILRTLMG 103
Query: 369 HTTNGSVQCLAFSENGFYLATGGSDGLIKLWDL-RKVRDFKTLTPGDDRTHYQ-INDLEF 542
H N + L F G ++A+G D IKLWD+ RK F+ R H Q + L F
Sbjct: 104 HKAN--ICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY------RGHSQAVRCLRF 155
Query: 543 DNSGSYLGVAGTD--VRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKL 716
G +L A D V+++ + + F H+G + F N + S S DRT++
Sbjct: 156 SPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRF 215
Query: 717 Y 719
+
Sbjct: 216 W 216
Score = 67.0 bits (162), Expect = 5e-11
Identities = 53/239 (22%), Positives = 105/239 (43%), Gaps = 6/239 (2%)
Frame = +3
Query: 24 IAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWAFSDIYS 203
+ T D + +W I +C + HT V + L+ +++ G D+ +
Sbjct: 35 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA 94
Query: 204 GKV---IMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAFLPHT 374
K+ +M H++ ++ + HP G A+G+ D + +W+++ K F
Sbjct: 95 AKILRTLMGHKA--------NICSLDFHPYGEFVASGSQDTNIKLWDIRR-KGCVFRYRG 145
Query: 375 TNGSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEFDNSG 554
+ +V+CL FS +G +LA+ D +KLWDL + PG +N +EF +
Sbjct: 146 HSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF-PGHTG---PVNVVEF-HPN 200
Query: 555 SYLGVAGTD---VRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKLYG 722
YL +G+ +R + ++++ V G + F + + S D ++++YG
Sbjct: 201 EYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQD-SLRVYG 258
Score = 53.9 bits (128), Expect = 5e-07
Identities = 34/148 (22%), Positives = 68/148 (45%)
Frame = +3
Query: 6 YHNTDEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWA 185
+H E + S D+ I++W I C R H+ +V L G ++ S+ +D
Sbjct: 113 FHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVK 172
Query: 186 FSDIYSGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAFL 365
D+ +GK++ + ++ HP+ + A+G+ D + W+L++ + V+ +
Sbjct: 173 LWDLTAGKMMSEFPG-----HTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCI 227
Query: 366 PHTTNGSVQCLAFSENGFYLATGGSDGL 449
G V+ + F+ +G L +G D L
Sbjct: 228 -EGEPGPVRSVLFNPDGCCLYSGCQDSL 254
>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1)
(p80 katanin)
Length = 655
Score = 81.3 bits (199), Expect = 3e-15
Identities = 47/152 (30%), Positives = 72/152 (47%)
Frame = +3
Query: 18 DEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWAFSDI 197
+E+ V S +IRVW +E A + H ++ L H G +V S D DI
Sbjct: 75 EELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDI 134
Query: 198 YSGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAFLPHTT 377
+ R++ + Q++ C++ PDG A+ DD V +W+L K ++ P T
Sbjct: 135 RRKGCVFRYRGHS-----QAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHT 189
Query: 378 NGSVQCLAFSENGFYLATGGSDGLIKLWDLRK 473
G V + F N + LA+G SD I+ WDL K
Sbjct: 190 -GPVNVVEFHPNEYLLASGSSDRTIRFWDLEK 220
Score = 70.5 bits (171), Expect = 5e-12
Identities = 68/241 (28%), Positives = 107/241 (44%), Gaps = 13/241 (5%)
Frame = +3
Query: 36 ASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWAFSDIYSGKVI 215
A+P T WK+++ I AH +V+ L L +L++G D C
Sbjct: 2 ATPVVTKTAWKLQE------IVAHASNVSSLVLGKASGRLLATGGDDC-----------R 44
Query: 216 MRHQSLNKSDAIQSLTCMKS--------HPDGLICATGTDDGEVSIWNLKEVKKV-AFLP 368
+ S+NK + I SLT S P+ LI A G+ G + +W+L+ K + +
Sbjct: 45 VNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVA-GSQSGSIRVWDLEAAKILRTLMG 103
Query: 369 HTTNGSVQCLAFSENGFYLATGGSDGLIKLWDL-RKVRDFKTLTPGDDRTHYQ-INDLEF 542
H N + L F G ++A+G D IKLWD+ RK F+ R H Q + L F
Sbjct: 104 HKAN--ICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY------RGHSQAVRCLRF 155
Query: 543 DNSGSYLGVAGTD--VRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKL 716
G +L A D V+++ + + F H+G + F N + S S DRT++
Sbjct: 156 SPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRF 215
Query: 717 Y 719
+
Sbjct: 216 W 216
Score = 67.0 bits (162), Expect = 5e-11
Identities = 53/239 (22%), Positives = 105/239 (43%), Gaps = 6/239 (2%)
Frame = +3
Query: 24 IAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWAFSDIYS 203
+ T D + +W I +C + HT V + L+ +++ G D+ +
Sbjct: 35 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA 94
Query: 204 GKV---IMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAFLPHT 374
K+ +M H++ ++ + HP G A+G+ D + +W+++ K F
Sbjct: 95 AKILRTLMGHKA--------NICSLDFHPYGEFVASGSQDTNIKLWDIRR-KGCVFRYRG 145
Query: 375 TNGSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEFDNSG 554
+ +V+CL FS +G +LA+ D +KLWDL + PG +N +EF +
Sbjct: 146 HSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF-PGHTG---PVNVVEF-HPN 200
Query: 555 SYLGVAGTD---VRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVKLYG 722
YL +G+ +R + ++++ V G + F + + S D ++++YG
Sbjct: 201 EYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQD-SLRVYG 258
Score = 53.9 bits (128), Expect = 5e-07
Identities = 34/148 (22%), Positives = 68/148 (45%)
Frame = +3
Query: 6 YHNTDEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWA 185
+H E + S D+ I++W I C R H+ +V L G ++ S+ +D
Sbjct: 113 FHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVK 172
Query: 186 FSDIYSGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAFL 365
D+ +GK++ + ++ HP+ + A+G+ D + W+L++ + V+ +
Sbjct: 173 LWDLTAGKMMSEFPG-----HTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCI 227
Query: 366 PHTTNGSVQCLAFSENGFYLATGGSDGL 449
G V+ + F+ +G L +G D L
Sbjct: 228 -EGEPGPVRSVLFNPDGCCLYSGCQDSL 254
>sp|O22212|PRP4_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein
Length = 554
Score = 80.9 bits (198), Expect = 4e-15
Identities = 59/245 (24%), Positives = 115/245 (46%), Gaps = 4/245 (1%)
Frame = +3
Query: 3 VYHNTDEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCW 182
V+ D+ TAS D T ++WK D + H + ++ H +G Y+ ++ D W
Sbjct: 305 VFSPVDDCLATASADRTAKLWKT-DGTLLQTFEGHLDRLARVAFHPSGKYLGTTSYDKTW 363
Query: 183 AFSDIYSGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKV-A 359
DI +G ++ + ++S + + DG + A+ D +W+L+ + +
Sbjct: 364 RLWDINTGAELLLQEGHSRS-----VYGIAFQQDGALAASCGLDSLARVWDLRTGRSILV 418
Query: 360 FLPHTTNGSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLE 539
F H V + FS NG++LA+GG D ++WDLR +R + P ++ ++
Sbjct: 419 FQGHIK--PVFSVNFSPNGYHLASGGEDNQCRIWDLR-MRKSLYIIPAHANL---VSQVK 472
Query: 540 FD-NSGSYLGVAGTDVRVYL--SKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTV 710
++ G +L A D++V + + + V + + H + +++ I + S DRT+
Sbjct: 473 YEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTI 532
Query: 711 KLYGS 725
KL+ S
Sbjct: 533 KLWTS 537
Score = 31.6 bits (70), Expect = 2.5
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 4/134 (2%)
Frame = +3
Query: 330 WNLKEVKKVAFLPHTTNGSVQCL---AFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTP 500
W LK K +A L + G + L +FS +G LAT G+ KLW++ +V + T+
Sbjct: 237 WALKHAKHMA-LDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWEMPQVTN--TIAV 293
Query: 501 GDDRTHYQINDLEFDNSGSYLGVAGTDVRVYLSK-QWERVVNFSAHSGLATGIRFGENAN 677
D + D+ F L A D L K + F H + F +
Sbjct: 294 LKDHKE-RATDVVFSPVDDCLATASADRTAKLWKTDGTLLQTFEGHLDRLARVAFHPSGK 352
Query: 678 TIISSSIDRTVKLY 719
+ ++S D+T +L+
Sbjct: 353 YLGTTSYDKTWRLW 366
>sp|Q7ZUV2|KTNB1_BRARE Katanin p80 WD40-containing subunit B1 homolog
Length = 694
Score = 80.9 bits (198), Expect = 4e-15
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 3/199 (1%)
Frame = +3
Query: 6 YHNTDEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWA 185
+++++E V S ++R+W +E A + H S++ L H G Y+ S D
Sbjct: 71 FNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIK 130
Query: 186 FSDIYSGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVA-F 362
D+ + R++ Q++ C+ PDG A+ +DD V +W+L K + F
Sbjct: 131 LWDVRRKGCVFRYKG-----HTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEF 185
Query: 363 LPHTTNGSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEF 542
HT+ +V + F N + LA+G +D +KLWDL K F + + T + + F
Sbjct: 186 TSHTS--AVNVVQFHPNEYLLASGSADRTVKLWDLEK---FNMIGSSEGETGV-VRSVLF 239
Query: 543 DNSGS--YLGVAGTDVRVY 593
+ GS Y G T +RVY
Sbjct: 240 NPDGSCLYSGSENT-LRVY 257
Score = 77.4 bits (189), Expect = 4e-14
Identities = 51/243 (20%), Positives = 114/243 (46%), Gaps = 6/243 (2%)
Frame = +3
Query: 12 NTDEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWAFS 191
++ + T D + +W + +C + HT +V + +++ V++ G
Sbjct: 31 SSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQFNSSEERVVAGSLSGSLRLW 90
Query: 192 DIYSGKV---IMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAF 362
D+ + K+ +M H++ S++ + HP G A+G+ D + +W+++ K F
Sbjct: 91 DLEAAKILRTLMGHKA--------SISSLDFHPMGEYLASGSVDSNIKLWDVRR-KGCVF 141
Query: 363 LPHTTNGSVQCLAFSENGFYLATGGSDGLIKLWDL---RKVRDFKTLTPGDDRTHYQIND 533
+V+CLAFS +G +LA+ D +KLWDL + + +F + T + + N+
Sbjct: 142 RYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNE 201
Query: 534 LEFDNSGSYLGVAGTDVRVYLSKQWERVVNFSAHSGLATGIRFGENANTIISSSIDRTVK 713
+ G A V+++ +++ + + +G+ + F + + + S S + T++
Sbjct: 202 YLLAS-----GSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNPDGSCLYSGS-ENTLR 255
Query: 714 LYG 722
+YG
Sbjct: 256 VYG 258
Score = 72.8 bits (177), Expect = 1e-12
Identities = 68/247 (27%), Positives = 107/247 (43%), Gaps = 19/247 (7%)
Frame = +3
Query: 36 ASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGC----WAFSDIYS 203
A ++TI WK+++ I AH+ +V+ L L + +L++G + C WA S
Sbjct: 2 ALTNTTITSWKLQE------IVAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWAVS---- 51
Query: 204 GKVIMRHQSLNKSDAIQSLT-------CMKSHPDGLICATGTDDGEVSIWNLKEVKKVAF 362
K + I SLT C++ + G+ G + +W+L+ K +
Sbjct: 52 -----------KPNCIMSLTGHTSAVGCIQFNSSEERVVAGSLSGSLRLWDLEAAKILRT 100
Query: 363 LPHTTNGSVQCLAFSENGFYLATGGSDGLIKLWDLRK---VRDFKTLTPGDDRTHYQIND 533
L S+ L F G YLA+G D IKLWD+R+ V +K T +
Sbjct: 101 LMGH-KASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQA-------VRC 152
Query: 534 LEFDNSGSYLGVAGTDVRVYLSKQWE-----RVVNFSAHSGLATGIRFGENANTIISSSI 698
L F G +L A D V K W+ + F++H+ ++F N + S S
Sbjct: 153 LAFSPDGKWLASASDDSTV---KLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSA 209
Query: 699 DRTVKLY 719
DRTVKL+
Sbjct: 210 DRTVKLW 216
Score = 60.1 bits (144), Expect = 6e-09
Identities = 42/182 (23%), Positives = 85/182 (46%)
Frame = +3
Query: 6 YHNTDEIAVTASPDSTIRVWKIEDASCGHVIRAHTGSVTGLSLHATGNYVLSSGNDGCWA 185
+H E + S DS I++W + C + HT +V L+ G ++ S+ +D
Sbjct: 113 FHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVK 172
Query: 186 FSDIYSGKVIMRHQSLNKSDAIQSLTCMKSHPDGLICATGTDDGEVSIWNLKEVKKVAFL 365
D+ +GK+I S ++ ++ HP+ + A+G+ D V +W+L++ +
Sbjct: 173 LWDLIAGKMITEFTS-----HTSAVNVVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSS 227
Query: 366 PHTTNGSVQCLAFSENGFYLATGGSDGLIKLWDLRKVRDFKTLTPGDDRTHYQINDLEFD 545
T G V+ + F+ +G L + GS+ ++++ R F + G + ++DL
Sbjct: 228 EGET-GVVRSVLFNPDGSCLYS-GSENTLRVYGWEPDRCFDVVHVGWGK----VSDLAIS 281
Query: 546 NS 551
N+
Sbjct: 282 NN 283
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,918,356
Number of Sequences: 369166
Number of extensions: 2097665
Number of successful extensions: 8346
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6850
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7066925600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)