Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02306
(514 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62850|RS24_RAT 40S ribosomal protein S24 >gi|51338647|s... 218 5e-57
sp|P02377|RS24_XENLA 40S ribosomal protein S24 (S19) 217 1e-56
sp|O42387|RS24_FUGRU 40S ribosomal protein S24 209 3e-54
sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24 204 1e-52
sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24 198 7e-51
sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24 179 3e-45
sp|Q9SS17|RS24_ARATH 40S ribosomal protein S24 134 2e-31
sp|P14249|RS24_RHIRA 40S ribosomal protein S24 126 3e-29
sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B 123 2e-28
sp|O13784|RS24A_SCHPO 40S ribosomal protein S24-A 119 4e-27
>sp|P62850|RS24_RAT 40S ribosomal protein S24
sp|P62849|RS24_MOUSE 40S ribosomal protein S24
sp|P62848|RS24_MESAU 40S ribosomal protein S24 (Ribosomal protein S19)
sp|P62847|RS24_HUMAN 40S ribosomal protein S24
Length = 133
Score = 218 bits (556), Expect = 5e-57
Identities = 112/128 (87%), Positives = 112/128 (87%)
Frame = +3
Query: 3 DTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVXXXXX 182
DTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFV
Sbjct: 3 DTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRT 62
Query: 183 XXXXXXXXXXXMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAK 362
MIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAK
Sbjct: 63 HFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAK 122
Query: 363 ANVGAGKK 386
ANVGAGKK
Sbjct: 123 ANVGAGKK 130
>sp|P02377|RS24_XENLA 40S ribosomal protein S24 (S19)
Length = 132
Score = 217 bits (553), Expect = 1e-56
Identities = 111/128 (86%), Positives = 112/128 (87%)
Frame = +3
Query: 3 DTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVXXXXX 182
DTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFV
Sbjct: 3 DTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRT 62
Query: 183 XXXXXXXXXXXMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAK 362
MIYDSLDYAKKNEPKHRLA+HGLYEKKKTSRKQRKERKNRMKKVRGTAK
Sbjct: 63 HFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEKKKTSRKQRKERKNRMKKVRGTAK 122
Query: 363 ANVGAGKK 386
ANVGAGKK
Sbjct: 123 ANVGAGKK 130
>sp|O42387|RS24_FUGRU 40S ribosomal protein S24
Length = 132
Score = 209 bits (532), Expect = 3e-54
Identities = 104/128 (81%), Positives = 110/128 (85%)
Frame = +3
Query: 3 DTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVXXXXX 182
DTVT+RTRKFMTNRLLQRKQMV+DVLHPGKATVPKTEIREKLAKMYKTTPDV+FV
Sbjct: 3 DTVTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRT 62
Query: 183 XXXXXXXXXXXMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAK 362
M+YDSLDYAKKNEPKHRLARHGL+EKKKTSRKQRKERKNRMKKVRGT K
Sbjct: 63 QFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNRMKKVRGTKK 122
Query: 363 ANVGAGKK 386
A+VGA KK
Sbjct: 123 ASVGASKK 130
>sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24
Length = 131
Score = 204 bits (518), Expect = 1e-52
Identities = 104/129 (80%), Positives = 111/129 (86%), Gaps = 1/129 (0%)
Frame = +3
Query: 3 DTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVXXXXX 182
D+VT+RTRKFMTNRLLQRKQMV+DVLHPGKATVPKTEIREKLAKMYKTTPDV+FV
Sbjct: 3 DSVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFKT 62
Query: 183 XXXXXXXXXXXMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAK 362
M+YDSLDYAKKNEPK+RLARHGLYEKKKTSRKQRKERKNRMKKVRGT K
Sbjct: 63 QFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNRMKKVRGTKK 122
Query: 363 ANVG-AGKK 386
A+VG AGKK
Sbjct: 123 ASVGAAGKK 131
>sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24
Length = 132
Score = 198 bits (503), Expect = 7e-51
Identities = 102/129 (79%), Positives = 107/129 (82%), Gaps = 1/129 (0%)
Frame = +3
Query: 3 DTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVXXXXX 182
DTVTIRTRKFMTNRLLQRKQMV+DVLHPGKATVPKTEIREKLAKMYKTTPDV+FV
Sbjct: 3 DTVTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRT 62
Query: 183 XXXXXXXXXXXMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAK 362
M+YDSLDYAKKNEPKHRLA HGLYEKKKTSRKQR ER+NRMKKVR K
Sbjct: 63 QFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNRMKKVRSIKK 122
Query: 363 ANVG-AGKK 386
A+VG AGKK
Sbjct: 123 ASVGAAGKK 131
>sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24
Length = 132
Score = 179 bits (455), Expect = 3e-45
Identities = 92/127 (72%), Positives = 98/127 (77%)
Frame = +3
Query: 6 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVXXXXXX 185
T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FV
Sbjct: 5 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 64
Query: 186 XXXXXXXXXXMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 365
+IYD+LD AKK EPKHRLARHGLYEKK+ +RKQRKERKNRMKKVRGT K+
Sbjct: 65 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKS 124
Query: 366 NVGAGKK 386
VGA K
Sbjct: 125 KVGAAAK 131
>sp|Q9SS17|RS24_ARATH 40S ribosomal protein S24
Length = 133
Score = 134 bits (336), Expect = 2e-31
Identities = 72/127 (56%), Positives = 86/127 (67%), Gaps = 1/127 (0%)
Frame = +3
Query: 9 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVXXXXXX 185
VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+ P+ IFV
Sbjct: 6 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTH 65
Query: 186 XXXXXXXXXXMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 365
+IYD+++ AKK EPK+RL R+GL K + SRKQ KERKNR KK+RG K
Sbjct: 66 FGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKT 125
Query: 366 NVGAGKK 386
G KK
Sbjct: 126 KAGDAKK 132
>sp|P14249|RS24_RHIRA 40S ribosomal protein S24
Length = 148
Score = 126 bits (316), Expect = 3e-29
Identities = 65/119 (54%), Positives = 78/119 (65%)
Frame = +3
Query: 9 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVXXXXXXX 188
VTIRTRKF+TNRLLQRKQMV+DV+HPG A V K E+R K+ KMYK +V+ V
Sbjct: 24 VTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKADKEVVSVFGFKTHF 83
Query: 189 XXXXXXXXXMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 365
+IYD+++ K EPKHRL R GL E K RKQRKE+KNR KK RG K+
Sbjct: 84 GGGKTTGFALIYDNVEALKNFEPKHRLVRIGLAEAPKGGRKQRKEKKNREKKFRGVRKS 142
>sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B
Length = 134
Score = 123 bits (309), Expect = 2e-28
Identities = 67/121 (55%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Frame = +3
Query: 3 DTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVXXXXX 182
+ VTIRTRKFMTNRLLQRKQMV+D+LHPGKA + K EIREKLA+MYKT + +
Sbjct: 3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRT 62
Query: 183 XXXXXXXXXXXMIYDSLDYAKKNEPKHRLARHGLYEK-KKTSRKQRKERKNRMKKVRGTA 359
+IYDS + KK EP +RL R G E +K +R+QRK+RKNR KKV GT
Sbjct: 63 HFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGTG 122
Query: 360 K 362
K
Sbjct: 123 K 123
>sp|O13784|RS24A_SCHPO 40S ribosomal protein S24-A
Length = 134
Score = 119 bits (298), Expect = 4e-27
Identities = 63/121 (52%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Frame = +3
Query: 3 DTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVXXXXX 182
+ VTIRTRKFMTNRLLQRKQMV+D+LHPGKA + K ++REKL +MYKT +
Sbjct: 3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRT 62
Query: 183 XXXXXXXXXXXMIYDSLDYAKKNEPKHRLARHGLYEK-KKTSRKQRKERKNRMKKVRGTA 359
+IYD ++ KK EP +RL R G E +K +R+QRK+RKNR KKV GT
Sbjct: 63 HYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGTG 122
Query: 360 K 362
K
Sbjct: 123 K 123
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,655,643
Number of Sequences: 369166
Number of extensions: 1281192
Number of successful extensions: 3900
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3878
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3304927425
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)