Planaria EST Database


DrC_02297

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02297
         (884 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38739|WSC4_YEAST  Cell wall integrity and stress respons...    30   6.9  
sp|Q5ANC9|ATG9_CANAL  Autophagy-related protein 9                  30   6.9  
sp|P40535|ACA2_YEAST  ATF/CREB activator 2 (Chromosome stabi...    30   6.9  
sp|P47136|BUD4_YEAST  Bud site selection protein BUD4              30   8.9  
>sp|P38739|WSC4_YEAST Cell wall integrity and stress response component 4 precursor
          Length = 605

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 24/76 (31%), Positives = 31/76 (40%)
 Frame = +2

Query: 365 SNTNRITFSPKTNISVADIAREISITTIFC*TRTPTVIPSFIIQTTTINRPQSTLTTSNK 544
           S T   + S  T +SV       + TT      T T   S    TTT + P ST TTS+ 
Sbjct: 200 STTTSTSSSTSTTVSVTSSTSTTTSTTSSTLISTSTSSSSSSTPTTTSSAPISTSTTSST 259

Query: 545 TIYPMI*CPRQSAAST 592
           +       P  S+A T
Sbjct: 260 STSTSTTSPTSSSAPT 275
>sp|Q5ANC9|ATG9_CANAL Autophagy-related protein 9
          Length = 952

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 496 NYNYQSSSINTNNIEQNYLSNDLMSSPVGSQHSDKENRMIPNEN 627
           +YN  +S+  +NN  +N+  NDL SS V     D  NR++  EN
Sbjct: 377 DYNSLTSTTKSNNFSENHYVNDL-SSKVRLNAHDIANRIMRREN 419
>sp|P40535|ACA2_YEAST ATF/CREB activator 2 (Chromosome stability protein CST6)
          Length = 587

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 112 PNTSTTATTYGVNYDNLSNYDINDRFLTMNLNKDP 216
           PN STTA T   N  N ++ +    F+ MN+N +P
Sbjct: 181 PNDSTTAPTNASNIANTASVNKQMYFMNMNMNNNP 215
>sp|P47136|BUD4_YEAST Bud site selection protein BUD4
          Length = 1447

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 30/97 (30%), Positives = 37/97 (38%), Gaps = 13/97 (13%)
 Frame = +2

Query: 296 TCFLL*QRIPVSLQRIPIRIAVQSNTNRITFSPKTN---------ISVADIAREISITTI 448
           TC     +I  S  RIPI  AV  N   + F+   N          SV    RE+   TI
Sbjct: 192 TCLTQSPQILHSPSRIPITNAVSINKLNLDFTLNPNESDKSLVSDTSVDSTGRELDTKTI 251

Query: 449 ----FC*TRTPTVIPSFIIQTTTINRPQSTLTTSNKT 547
               FC + TP + P         N P   L TSN +
Sbjct: 252 PELPFCMSSTPEMTP----VDEKCNLPSKLLNTSNNS 284
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,898,023
Number of Sequences: 369166
Number of extensions: 1670794
Number of successful extensions: 4119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4101
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)