Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02297
(884 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38739|WSC4_YEAST Cell wall integrity and stress respons... 30 6.9
sp|Q5ANC9|ATG9_CANAL Autophagy-related protein 9 30 6.9
sp|P40535|ACA2_YEAST ATF/CREB activator 2 (Chromosome stabi... 30 6.9
sp|P47136|BUD4_YEAST Bud site selection protein BUD4 30 8.9
>sp|P38739|WSC4_YEAST Cell wall integrity and stress response component 4 precursor
Length = 605
Score = 30.4 bits (67), Expect = 6.9
Identities = 24/76 (31%), Positives = 31/76 (40%)
Frame = +2
Query: 365 SNTNRITFSPKTNISVADIAREISITTIFC*TRTPTVIPSFIIQTTTINRPQSTLTTSNK 544
S T + S T +SV + TT T T S TTT + P ST TTS+
Sbjct: 200 STTTSTSSSTSTTVSVTSSTSTTTSTTSSTLISTSTSSSSSSTPTTTSSAPISTSTTSST 259
Query: 545 TIYPMI*CPRQSAAST 592
+ P S+A T
Sbjct: 260 STSTSTTSPTSSSAPT 275
>sp|Q5ANC9|ATG9_CANAL Autophagy-related protein 9
Length = 952
Score = 30.4 bits (67), Expect = 6.9
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 496 NYNYQSSSINTNNIEQNYLSNDLMSSPVGSQHSDKENRMIPNEN 627
+YN +S+ +NN +N+ NDL SS V D NR++ EN
Sbjct: 377 DYNSLTSTTKSNNFSENHYVNDL-SSKVRLNAHDIANRIMRREN 419
>sp|P40535|ACA2_YEAST ATF/CREB activator 2 (Chromosome stability protein CST6)
Length = 587
Score = 30.4 bits (67), Expect = 6.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 112 PNTSTTATTYGVNYDNLSNYDINDRFLTMNLNKDP 216
PN STTA T N N ++ + F+ MN+N +P
Sbjct: 181 PNDSTTAPTNASNIANTASVNKQMYFMNMNMNNNP 215
>sp|P47136|BUD4_YEAST Bud site selection protein BUD4
Length = 1447
Score = 30.0 bits (66), Expect = 8.9
Identities = 30/97 (30%), Positives = 37/97 (38%), Gaps = 13/97 (13%)
Frame = +2
Query: 296 TCFLL*QRIPVSLQRIPIRIAVQSNTNRITFSPKTN---------ISVADIAREISITTI 448
TC +I S RIPI AV N + F+ N SV RE+ TI
Sbjct: 192 TCLTQSPQILHSPSRIPITNAVSINKLNLDFTLNPNESDKSLVSDTSVDSTGRELDTKTI 251
Query: 449 ----FC*TRTPTVIPSFIIQTTTINRPQSTLTTSNKT 547
FC + TP + P N P L TSN +
Sbjct: 252 PELPFCMSSTPEMTP----VDEKCNLPSKLLNTSNNS 284
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,898,023
Number of Sequences: 369166
Number of extensions: 1670794
Number of successful extensions: 4119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4101
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)