Planaria EST Database


DrC_02258

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02258
         (566 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O95447|CU013_HUMAN  Protein C21orf13                            67   2e-11
sp|Q80ST9|CF152_MOUSE  Protein C6orf152 homolog                    64   3e-10
sp|Q86VQ0|CF152_HUMAN  Protein C6orf152                            62   8e-10
sp|Q5U2Y9|CF152_RAT  Protein C6orf152 homolog                      62   1e-09
sp|O42184|REST_CHICK  Restin (Cytoplasmic linker protein 170...    36   0.058
sp|Q05070|Y4393_ANASP  Hypothetical protein alr4393 precursor      32   0.84 
sp|P10999|LAML3_XENLA  Lamin L(III) (Lamin B3)                     32   1.1  
sp|Q11102|YL17_CAEEL  Hypothetical protein C02F12.7 in chrom...    32   1.1  
sp|Q9UTK5|ALM1_SCHPO  Abnormal long morphology protein 1 (Sp8)     32   1.4  
sp|Q8TXI4|RAD50_METKA  DNA double-strand break repair rad50 ...    31   1.9  
>sp|O95447|CU013_HUMAN Protein C21orf13
          Length = 670

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 42/163 (25%), Positives = 76/163 (46%)
 Frame = +3

Query: 66  KYLNKVNSRDADVPTIIARYNAELHSLQEQLRRKKERLDVVERQKTELDSXXXXXXXXXX 245
           K + K  +   ++P I+A++  E+ +L++ LR+ +E+   + R+  E DS          
Sbjct: 184 KAIGKYENSQNNLPQIMAKHQNEVKNLRQLLRKSQEKERTLSRKLRETDSQLLKTKDILQ 243

Query: 246 XXXXXXXDKQLQERXXXXXXXXXXXXXXXTEIKKNADLERNMELLSKKHNYQMTLESNKY 425
                  DK L ER                  KK   LE+ + L  +  + Q+ +E+ K 
Sbjct: 244 ALQKLSEDKNLAEREELTHKLSIITTKMDANDKKIQSLEKQLRLNCRAFSRQLAIETRKT 303

Query: 426 KELKQLYNDSLVELKNIRSTLKEKTKMLEMQNIYSKRVVRAPH 554
              +       VE+K+++  LKEK + LE++NIYS R+++  H
Sbjct: 304 LAAQTATKTLQVEVKHLQQKLKEKDRELEIKNIYSHRILKNLH 346
>sp|Q80ST9|CF152_MOUSE Protein C6orf152 homolog
          Length = 704

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 3/184 (1%)
 Frame = +3

Query: 6   QLVENVSELKTVQNQNKIQEKYLNKVNSRDADVPTIIARYNAELHSLQEQLRRKKERLDV 185
           QL++    LK++Q +   QEK LNK    + ++  +I R+N E+ +L+E+LR+ +E+   
Sbjct: 131 QLLKENKALKSLQYR---QEKALNKFEDAENEISQLIHRHNNEITALKERLRKSQEKERA 187

Query: 186 VERQKTELDSXXXXXXXXXXXXXXXXXDKQLQERXXXXXXXXXXXXXXXTEIKKNADLER 365
            E++  E +                   + L ER                  +K  +L +
Sbjct: 188 TEKRVKETEGELFRTKFSLQKLKKISEARHLPERDDLAKKLVSAELKLDDTERKIKELSK 247

Query: 366 NMELLSKKHNYQMTLESNKYKELKQLYNDSLV---ELKNIRSTLKEKTKMLEMQNIYSKR 536
           N+EL +     Q+  E    K   + Y+++ V   EL+ +   LKEK K L+++NIY+ R
Sbjct: 248 NLELSTNSFQRQLLAER---KRAFEAYDENKVLQKELQRLHHKLKEKEKELDIKNIYANR 304

Query: 537 VVRA 548
           + ++
Sbjct: 305 LPKS 308
>sp|Q86VQ0|CF152_HUMAN Protein C6orf152
          Length = 697

 Score = 62.4 bits (150), Expect = 8e-10
 Identities = 42/181 (23%), Positives = 82/181 (45%)
 Frame = +3

Query: 6   QLVENVSELKTVQNQNKIQEKYLNKVNSRDADVPTIIARYNAELHSLQEQLRRKKERLDV 185
           +L E + E K+++     QEK LNK    + ++  +I R+N E+ +L+E+LR+ +E+   
Sbjct: 125 KLAELLKENKSLKRLQYRQEKALNKFEDAENEISQLIFRHNNEITALKERLRKSQEKERA 184

Query: 186 VERQKTELDSXXXXXXXXXXXXXXXXXDKQLQERXXXXXXXXXXXXXXXTEIKKNADLER 365
            E++  + +S                  + L ER                  ++  +L +
Sbjct: 185 TEKRVKDTESELFRTKFSLQKLKEISEARHLPERDDLAKKLVSAELKLDDTERRIKELSK 244

Query: 366 NMELLSKKHNYQMTLESNKYKELKQLYNDSLVELKNIRSTLKEKTKMLEMQNIYSKRVVR 545
           N+EL +     Q+  E  +  E          E++ +   LKEK + L+++NIYS R+ +
Sbjct: 245 NLELSTNSFQRQLLAERKRAYEAHDENKVLQKEVQRLYHKLKEKERELDIKNIYSNRLPK 304

Query: 546 A 548
           +
Sbjct: 305 S 305
>sp|Q5U2Y9|CF152_RAT Protein C6orf152 homolog
          Length = 727

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 43/181 (23%), Positives = 83/181 (45%)
 Frame = +3

Query: 6   QLVENVSELKTVQNQNKIQEKYLNKVNSRDADVPTIIARYNAELHSLQEQLRRKKERLDV 185
           QL++    LK++Q +   QEK L+K    + ++  +I R+N E+ +L+E+LR+ +E+  +
Sbjct: 132 QLLKENKALKSLQYR---QEKALSKFEDAENEISQLIHRHNGEITALKERLRKSQEKERM 188

Query: 186 VERQKTELDSXXXXXXXXXXXXXXXXXDKQLQERXXXXXXXXXXXXXXXTEIKKNADLER 365
            E++  + +                   + L ER                  +K  +L +
Sbjct: 189 AEKRVKDTEGELFRTKFSLQKLKKISEARHLPERDDLAKKLVSAELKLDNTERKIKELSK 248

Query: 366 NMELLSKKHNYQMTLESNKYKELKQLYNDSLVELKNIRSTLKEKTKMLEMQNIYSKRVVR 545
           N+EL +     Q+  E  +  E          EL+ +   LKEK K L+++NIY+ R+ +
Sbjct: 249 NLELSTNSFQRQLLAERKRAFEAHDENKILQKELQRLHHKLKEKEKELDIKNIYANRLPK 308

Query: 546 A 548
           +
Sbjct: 309 S 309
>sp|O42184|REST_CHICK Restin (Cytoplasmic linker protein 170) (CLIP-170)
          Length = 1433

 Score = 36.2 bits (82), Expect = 0.058
 Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 2/164 (1%)
 Frame = +3

Query: 6    QLVENVSELKTVQNQNK-IQEKYLNKVNSRDADVPTIIARYNAELHSLQEQLRRKKERLD 182
            QL +   +++T QNQ K +Q KY  + +         I  +   L   +E L+  +++ D
Sbjct: 991  QLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKND 1050

Query: 183  VVERQKTELDSXXXXXXXXXXXXXXXXX-DKQLQERXXXXXXXXXXXXXXXTEIKKNADL 359
             +E Q  EL                    +K  +E+                  + N  L
Sbjct: 1051 ELETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKL 1110

Query: 360  ERNMELLSKKHNYQMTLESNKYKELKQLYNDSLVELKNIRSTLK 491
            +  +++L K++N +   E  K KEL  L N  + ELK     LK
Sbjct: 1111 QNELDML-KQNNLKNEEELTKSKELLNLENKKVEELKKEFEALK 1153
>sp|Q05070|Y4393_ANASP Hypothetical protein alr4393 precursor
          Length = 496

 Score = 32.3 bits (72), Expect = 0.84
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +3

Query: 132 ELHSLQEQLRRKKERLDVVERQKTELD 212
           EL  +Q+ LR+K+E+L V E QKT+++
Sbjct: 77  ELEDIQKDLRQKREQLKVAEEQKTQVE 103
>sp|P10999|LAML3_XENLA Lamin L(III) (Lamin B3)
          Length = 583

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 26/144 (18%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
 Frame = +3

Query: 66  KYLNKVNSRDADVPTIIARYNAELHSLQEQLRRKKERLDVVERQKTELDSXXXXXXXXXX 245
           K L++  +  A +   + +   E   LQ +  +K+  L + + Q  +L+S          
Sbjct: 89  KLLDQTANERARLQVELGKVREEYRQLQARNSKKENDLSLAQNQLRDLESKLNTKEAELA 148

Query: 246 XXXXXXX--DKQLQERXXXXXXXXXXXXXXXTEIKKN----ADLERNMELLSKKHNYQMT 407
                    ++QLQE+                ++        DLE  M+ + ++ ++Q  
Sbjct: 149 TALSGKRGLEEQLQEQRAQIAGLESSLRDTTKQLHDEMLWRVDLENKMQTIREQLDFQKN 208

Query: 408 LESNKYKELKQLYNDSLVELKNIR 479
           + + + KE+K+ ++  +VE+ + R
Sbjct: 209 IHTQEVKEIKKRHDTRIVEIDSGR 232
>sp|Q11102|YL17_CAEEL Hypothetical protein C02F12.7 in chromosome X
          Length = 1130

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 33  KTVQNQNKIQEKYLNKVNS---RDADVPTIIARYNAELHSLQEQLRRKKERLDVVERQKT 203
           K VQ   K  ++   + N    R  +V +  A Y  +    +E+LRRK   L VVE  K 
Sbjct: 349 KEVQTLTKELDQVKTETNDKIRRLTEVTSEFAEYRKKFQQQEEELRRKARLLTVVEAAKE 408

Query: 204 ELDS 215
           +L+S
Sbjct: 409 KLES 412
>sp|Q9UTK5|ALM1_SCHPO Abnormal long morphology protein 1 (Sp8)
          Length = 1727

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = +3

Query: 360 ERNMELLSKKHNYQMTLESNKYKELKQLYNDSLVELKNIRSTLKEKTKML-----EMQNI 524
           +RN +LLS+    +  LE++KY++  QL  D L    N     K++ K L      +Q+I
Sbjct: 668 KRNQDLLSEMEAIRKELENSKYQQ--QLSTDRLTNANNDVEAFKKEAKELRSINQNLQDI 725

Query: 525 YSKRVVRA 548
            S++  RA
Sbjct: 726 ISRQDQRA 733
>sp|Q8TXI4|RAD50_METKA DNA double-strand break repair rad50 ATPase
          Length = 876

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 5/167 (2%)
 Frame = +3

Query: 27  ELKTVQNQNKIQEKYLNKVNSRDADVPTIIARYNAELHSLQEQLRRKKERLDVVERQKTE 206
           +L+ +  + K  E+ L ++     DVP+ +     E   L+ ++   +  LD +   +  
Sbjct: 262 DLRKLVEEGKEAERELQRLG----DVPSKVRELENEEAELRRRIEELRNLLDDLRSLRNR 317

Query: 207 LDSXXXXXXXXXXXXXXXXXDKQLQ-ERXXXXXXXXXXXXXXXTEIKKNADLERNMEL-- 377
           L+S                 +  +  ER                ++++  +L+R +E   
Sbjct: 318 LESAEEELEGVKRELEELKDEAGVDPERLVEFKDKIVEASERLRDLRREEELKRKLEKVS 377

Query: 378 --LSKKHNYQMTLESNKYKELKQLYNDSLVELKNIRSTLKEKTKMLE 512
             LS+  + + TL+S +Y+EL++  ++   ELK IR   KE  + +E
Sbjct: 378 DELSELGDREETLQS-EYEELQERLDEIQGELKEIRVKEKELLERIE 423
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,697,387
Number of Sequences: 369166
Number of extensions: 635900
Number of successful extensions: 2919
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2912
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4127973360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)