Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02258
(566 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O95447|CU013_HUMAN Protein C21orf13 67 2e-11
sp|Q80ST9|CF152_MOUSE Protein C6orf152 homolog 64 3e-10
sp|Q86VQ0|CF152_HUMAN Protein C6orf152 62 8e-10
sp|Q5U2Y9|CF152_RAT Protein C6orf152 homolog 62 1e-09
sp|O42184|REST_CHICK Restin (Cytoplasmic linker protein 170... 36 0.058
sp|Q05070|Y4393_ANASP Hypothetical protein alr4393 precursor 32 0.84
sp|P10999|LAML3_XENLA Lamin L(III) (Lamin B3) 32 1.1
sp|Q11102|YL17_CAEEL Hypothetical protein C02F12.7 in chrom... 32 1.1
sp|Q9UTK5|ALM1_SCHPO Abnormal long morphology protein 1 (Sp8) 32 1.4
sp|Q8TXI4|RAD50_METKA DNA double-strand break repair rad50 ... 31 1.9
>sp|O95447|CU013_HUMAN Protein C21orf13
Length = 670
Score = 67.4 bits (163), Expect = 2e-11
Identities = 42/163 (25%), Positives = 76/163 (46%)
Frame = +3
Query: 66 KYLNKVNSRDADVPTIIARYNAELHSLQEQLRRKKERLDVVERQKTELDSXXXXXXXXXX 245
K + K + ++P I+A++ E+ +L++ LR+ +E+ + R+ E DS
Sbjct: 184 KAIGKYENSQNNLPQIMAKHQNEVKNLRQLLRKSQEKERTLSRKLRETDSQLLKTKDILQ 243
Query: 246 XXXXXXXDKQLQERXXXXXXXXXXXXXXXTEIKKNADLERNMELLSKKHNYQMTLESNKY 425
DK L ER KK LE+ + L + + Q+ +E+ K
Sbjct: 244 ALQKLSEDKNLAEREELTHKLSIITTKMDANDKKIQSLEKQLRLNCRAFSRQLAIETRKT 303
Query: 426 KELKQLYNDSLVELKNIRSTLKEKTKMLEMQNIYSKRVVRAPH 554
+ VE+K+++ LKEK + LE++NIYS R+++ H
Sbjct: 304 LAAQTATKTLQVEVKHLQQKLKEKDRELEIKNIYSHRILKNLH 346
>sp|Q80ST9|CF152_MOUSE Protein C6orf152 homolog
Length = 704
Score = 63.9 bits (154), Expect = 3e-10
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 3/184 (1%)
Frame = +3
Query: 6 QLVENVSELKTVQNQNKIQEKYLNKVNSRDADVPTIIARYNAELHSLQEQLRRKKERLDV 185
QL++ LK++Q + QEK LNK + ++ +I R+N E+ +L+E+LR+ +E+
Sbjct: 131 QLLKENKALKSLQYR---QEKALNKFEDAENEISQLIHRHNNEITALKERLRKSQEKERA 187
Query: 186 VERQKTELDSXXXXXXXXXXXXXXXXXDKQLQERXXXXXXXXXXXXXXXTEIKKNADLER 365
E++ E + + L ER +K +L +
Sbjct: 188 TEKRVKETEGELFRTKFSLQKLKKISEARHLPERDDLAKKLVSAELKLDDTERKIKELSK 247
Query: 366 NMELLSKKHNYQMTLESNKYKELKQLYNDSLV---ELKNIRSTLKEKTKMLEMQNIYSKR 536
N+EL + Q+ E K + Y+++ V EL+ + LKEK K L+++NIY+ R
Sbjct: 248 NLELSTNSFQRQLLAER---KRAFEAYDENKVLQKELQRLHHKLKEKEKELDIKNIYANR 304
Query: 537 VVRA 548
+ ++
Sbjct: 305 LPKS 308
>sp|Q86VQ0|CF152_HUMAN Protein C6orf152
Length = 697
Score = 62.4 bits (150), Expect = 8e-10
Identities = 42/181 (23%), Positives = 82/181 (45%)
Frame = +3
Query: 6 QLVENVSELKTVQNQNKIQEKYLNKVNSRDADVPTIIARYNAELHSLQEQLRRKKERLDV 185
+L E + E K+++ QEK LNK + ++ +I R+N E+ +L+E+LR+ +E+
Sbjct: 125 KLAELLKENKSLKRLQYRQEKALNKFEDAENEISQLIFRHNNEITALKERLRKSQEKERA 184
Query: 186 VERQKTELDSXXXXXXXXXXXXXXXXXDKQLQERXXXXXXXXXXXXXXXTEIKKNADLER 365
E++ + +S + L ER ++ +L +
Sbjct: 185 TEKRVKDTESELFRTKFSLQKLKEISEARHLPERDDLAKKLVSAELKLDDTERRIKELSK 244
Query: 366 NMELLSKKHNYQMTLESNKYKELKQLYNDSLVELKNIRSTLKEKTKMLEMQNIYSKRVVR 545
N+EL + Q+ E + E E++ + LKEK + L+++NIYS R+ +
Sbjct: 245 NLELSTNSFQRQLLAERKRAYEAHDENKVLQKEVQRLYHKLKEKERELDIKNIYSNRLPK 304
Query: 546 A 548
+
Sbjct: 305 S 305
>sp|Q5U2Y9|CF152_RAT Protein C6orf152 homolog
Length = 727
Score = 62.0 bits (149), Expect = 1e-09
Identities = 43/181 (23%), Positives = 83/181 (45%)
Frame = +3
Query: 6 QLVENVSELKTVQNQNKIQEKYLNKVNSRDADVPTIIARYNAELHSLQEQLRRKKERLDV 185
QL++ LK++Q + QEK L+K + ++ +I R+N E+ +L+E+LR+ +E+ +
Sbjct: 132 QLLKENKALKSLQYR---QEKALSKFEDAENEISQLIHRHNGEITALKERLRKSQEKERM 188
Query: 186 VERQKTELDSXXXXXXXXXXXXXXXXXDKQLQERXXXXXXXXXXXXXXXTEIKKNADLER 365
E++ + + + L ER +K +L +
Sbjct: 189 AEKRVKDTEGELFRTKFSLQKLKKISEARHLPERDDLAKKLVSAELKLDNTERKIKELSK 248
Query: 366 NMELLSKKHNYQMTLESNKYKELKQLYNDSLVELKNIRSTLKEKTKMLEMQNIYSKRVVR 545
N+EL + Q+ E + E EL+ + LKEK K L+++NIY+ R+ +
Sbjct: 249 NLELSTNSFQRQLLAERKRAFEAHDENKILQKELQRLHHKLKEKEKELDIKNIYANRLPK 308
Query: 546 A 548
+
Sbjct: 309 S 309
>sp|O42184|REST_CHICK Restin (Cytoplasmic linker protein 170) (CLIP-170)
Length = 1433
Score = 36.2 bits (82), Expect = 0.058
Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 2/164 (1%)
Frame = +3
Query: 6 QLVENVSELKTVQNQNK-IQEKYLNKVNSRDADVPTIIARYNAELHSLQEQLRRKKERLD 182
QL + +++T QNQ K +Q KY + + I + L +E L+ +++ D
Sbjct: 991 QLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKND 1050
Query: 183 VVERQKTELDSXXXXXXXXXXXXXXXXX-DKQLQERXXXXXXXXXXXXXXXTEIKKNADL 359
+E Q EL +K +E+ + N L
Sbjct: 1051 ELETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKL 1110
Query: 360 ERNMELLSKKHNYQMTLESNKYKELKQLYNDSLVELKNIRSTLK 491
+ +++L K++N + E K KEL L N + ELK LK
Sbjct: 1111 QNELDML-KQNNLKNEEELTKSKELLNLENKKVEELKKEFEALK 1153
>sp|Q05070|Y4393_ANASP Hypothetical protein alr4393 precursor
Length = 496
Score = 32.3 bits (72), Expect = 0.84
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +3
Query: 132 ELHSLQEQLRRKKERLDVVERQKTELD 212
EL +Q+ LR+K+E+L V E QKT+++
Sbjct: 77 ELEDIQKDLRQKREQLKVAEEQKTQVE 103
>sp|P10999|LAML3_XENLA Lamin L(III) (Lamin B3)
Length = 583
Score = 32.0 bits (71), Expect = 1.1
Identities = 26/144 (18%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Frame = +3
Query: 66 KYLNKVNSRDADVPTIIARYNAELHSLQEQLRRKKERLDVVERQKTELDSXXXXXXXXXX 245
K L++ + A + + + E LQ + +K+ L + + Q +L+S
Sbjct: 89 KLLDQTANERARLQVELGKVREEYRQLQARNSKKENDLSLAQNQLRDLESKLNTKEAELA 148
Query: 246 XXXXXXX--DKQLQERXXXXXXXXXXXXXXXTEIKKN----ADLERNMELLSKKHNYQMT 407
++QLQE+ ++ DLE M+ + ++ ++Q
Sbjct: 149 TALSGKRGLEEQLQEQRAQIAGLESSLRDTTKQLHDEMLWRVDLENKMQTIREQLDFQKN 208
Query: 408 LESNKYKELKQLYNDSLVELKNIR 479
+ + + KE+K+ ++ +VE+ + R
Sbjct: 209 IHTQEVKEIKKRHDTRIVEIDSGR 232
>sp|Q11102|YL17_CAEEL Hypothetical protein C02F12.7 in chromosome X
Length = 1130
Score = 32.0 bits (71), Expect = 1.1
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 33 KTVQNQNKIQEKYLNKVNS---RDADVPTIIARYNAELHSLQEQLRRKKERLDVVERQKT 203
K VQ K ++ + N R +V + A Y + +E+LRRK L VVE K
Sbjct: 349 KEVQTLTKELDQVKTETNDKIRRLTEVTSEFAEYRKKFQQQEEELRRKARLLTVVEAAKE 408
Query: 204 ELDS 215
+L+S
Sbjct: 409 KLES 412
>sp|Q9UTK5|ALM1_SCHPO Abnormal long morphology protein 1 (Sp8)
Length = 1727
Score = 31.6 bits (70), Expect = 1.4
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +3
Query: 360 ERNMELLSKKHNYQMTLESNKYKELKQLYNDSLVELKNIRSTLKEKTKML-----EMQNI 524
+RN +LLS+ + LE++KY++ QL D L N K++ K L +Q+I
Sbjct: 668 KRNQDLLSEMEAIRKELENSKYQQ--QLSTDRLTNANNDVEAFKKEAKELRSINQNLQDI 725
Query: 525 YSKRVVRA 548
S++ RA
Sbjct: 726 ISRQDQRA 733
>sp|Q8TXI4|RAD50_METKA DNA double-strand break repair rad50 ATPase
Length = 876
Score = 31.2 bits (69), Expect = 1.9
Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 5/167 (2%)
Frame = +3
Query: 27 ELKTVQNQNKIQEKYLNKVNSRDADVPTIIARYNAELHSLQEQLRRKKERLDVVERQKTE 206
+L+ + + K E+ L ++ DVP+ + E L+ ++ + LD + +
Sbjct: 262 DLRKLVEEGKEAERELQRLG----DVPSKVRELENEEAELRRRIEELRNLLDDLRSLRNR 317
Query: 207 LDSXXXXXXXXXXXXXXXXXDKQLQ-ERXXXXXXXXXXXXXXXTEIKKNADLERNMEL-- 377
L+S + + ER ++++ +L+R +E
Sbjct: 318 LESAEEELEGVKRELEELKDEAGVDPERLVEFKDKIVEASERLRDLRREEELKRKLEKVS 377
Query: 378 --LSKKHNYQMTLESNKYKELKQLYNDSLVELKNIRSTLKEKTKMLE 512
LS+ + + TL+S +Y+EL++ ++ ELK IR KE + +E
Sbjct: 378 DELSELGDREETLQS-EYEELQERLDEIQGELKEIRVKEKELLERIE 423
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,697,387
Number of Sequences: 369166
Number of extensions: 635900
Number of successful extensions: 2919
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2912
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4127973360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)