Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02252
(910 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q33568|CYB_TRYBO Cytochrome b 36 0.17
sp|Q9HF75|BEM2_ASHGO GTPase-activating protein BEM2 31 4.2
>sp|Q33568|CYB_TRYBO Cytochrome b
Length = 372
Score = 35.8 bits (81), Expect = 0.17
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = -2
Query: 267 IRFLFGLCMDQYFLDILISQRFAN**IYYLIVHIHFDLVYNDRFLHRVLNRSPLL*EY*H 88
++ L G+C+ +F +I Q + I+ L++H+ FDL + R LH + Y H
Sbjct: 42 LQILVGICLSWFFFRCIIPQNW----IFTLLIHLEFDLGFIIRSLHIIFTSLLYFLLYIH 97
Query: 87 SVLSLNLCKHF 55
+ + LC F
Sbjct: 98 IIKVIFLCLIF 108
>sp|Q9HF75|BEM2_ASHGO GTPase-activating protein BEM2
Length = 2071
Score = 31.2 bits (69), Expect = 4.2
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -2
Query: 690 PSNRTVPKSQTASFLQYRSVNNCNHSVAGNSWCVS--YSVDNIDIRIPVEY*KKIS 529
PS + SQ ++ + SVN+ HS A +S S +DNID+ I E K+S
Sbjct: 787 PSTKNNNSSQASNRISQLSVNSTPHSNASSSSAASAVTGIDNIDVPITKEISSKLS 842
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,154,866
Number of Sequences: 369166
Number of extensions: 1830806
Number of successful extensions: 4599
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4596
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9222552960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)