Planaria EST Database


DrC_02247

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02247
         (209 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q94481|CIGB_DICDI  Protein cigB                                 29   2.9  
sp|Q86SQ9|DHDDS_HUMAN  Dehydrodolichyl diphosphate synthase ...    29   3.8  
sp|Q9NLA1|FLR4_CAEEL  Serine/threonine-protein kinase flr-4 ...    28   6.5  
sp|Q01443|SSP2_PLAYO  Sporozoite surface protein 2 precursor       28   6.5  
>sp|Q94481|CIGB_DICDI Protein cigB
          Length = 735

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 22  DFKSSENILNVSKSSIVIAEIPND--DYSEETKCELMSNNNNDN 147
           D ++  NI N  KS     +IPND  DY+        +NNNN+N
Sbjct: 223 DNQTINNIKNSFKSIYSFGDIPNDAIDYNINNNNNNNNNNNNNN 266
>sp|Q86SQ9|DHDDS_HUMAN Dehydrodolichyl diphosphate synthase (Dedol-PP synthase)
          Length = 333

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 62  VPLLLQKFLMMIIQKKQNVNLCLITIMIIDLRRETISHAVEK 187
           +PL LQ+ +   +Q  +N N C + +      R  IS+AV +
Sbjct: 127 LPLDLQELIAQAVQATKNYNKCFLNVCFAYTSRHEISNAVRE 168
>sp|Q9NLA1|FLR4_CAEEL Serine/threonine-protein kinase flr-4 (Fluoride resistant protein
           4)
          Length = 570

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +1

Query: 10  IDVLDFKSSENILNVSKSSIVIAEIPNDDYSEETKCEL---MSNNNNDNRFA 156
           +D++  KS E+  N  K  I I +I +DD   E + ++   +SN+N D+  A
Sbjct: 306 VDLVFIKSPEHRPNTHKLRIQIKKILDDDSESEEETDISHPISNSNTDSSTA 357
>sp|Q01443|SSP2_PLAYO Sporozoite surface protein 2 precursor
          Length = 827

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 49  NVSKSSIVIAEIPNDDYSEETKCELMSNNNNDNRFAQG 162
           NV+K++    EIPN++Y EE K +  S +NN  + A G
Sbjct: 731 NVNKNNKDEPEIPNNEY-EEDKNKNQSKSNNGYKIAGG 767
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.311    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,689,489
Number of Sequences: 369166
Number of extensions: 280161
Number of successful extensions: 775
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 68,354,980
effective HSP length: 41
effective length of database: 60,780,845
effective search space used: 1701863660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)