Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02247
(209 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94481|CIGB_DICDI Protein cigB 29 2.9
sp|Q86SQ9|DHDDS_HUMAN Dehydrodolichyl diphosphate synthase ... 29 3.8
sp|Q9NLA1|FLR4_CAEEL Serine/threonine-protein kinase flr-4 ... 28 6.5
sp|Q01443|SSP2_PLAYO Sporozoite surface protein 2 precursor 28 6.5
>sp|Q94481|CIGB_DICDI Protein cigB
Length = 735
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 22 DFKSSENILNVSKSSIVIAEIPND--DYSEETKCELMSNNNNDN 147
D ++ NI N KS +IPND DY+ +NNNN+N
Sbjct: 223 DNQTINNIKNSFKSIYSFGDIPNDAIDYNINNNNNNNNNNNNNN 266
>sp|Q86SQ9|DHDDS_HUMAN Dehydrodolichyl diphosphate synthase (Dedol-PP synthase)
Length = 333
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 62 VPLLLQKFLMMIIQKKQNVNLCLITIMIIDLRRETISHAVEK 187
+PL LQ+ + +Q +N N C + + R IS+AV +
Sbjct: 127 LPLDLQELIAQAVQATKNYNKCFLNVCFAYTSRHEISNAVRE 168
>sp|Q9NLA1|FLR4_CAEEL Serine/threonine-protein kinase flr-4 (Fluoride resistant protein
4)
Length = 570
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +1
Query: 10 IDVLDFKSSENILNVSKSSIVIAEIPNDDYSEETKCEL---MSNNNNDNRFA 156
+D++ KS E+ N K I I +I +DD E + ++ +SN+N D+ A
Sbjct: 306 VDLVFIKSPEHRPNTHKLRIQIKKILDDDSESEEETDISHPISNSNTDSSTA 357
>sp|Q01443|SSP2_PLAYO Sporozoite surface protein 2 precursor
Length = 827
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 49 NVSKSSIVIAEIPNDDYSEETKCELMSNNNNDNRFAQG 162
NV+K++ EIPN++Y EE K + S +NN + A G
Sbjct: 731 NVNKNNKDEPEIPNNEY-EEDKNKNQSKSNNGYKIAGG 767
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.311 0.129 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,689,489
Number of Sequences: 369166
Number of extensions: 280161
Number of successful extensions: 775
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 68,354,980
effective HSP length: 41
effective length of database: 60,780,845
effective search space used: 1701863660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)