Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02246
(314 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8SWD4|UBIQ_ENCCU Ubiquitin precursor 84 1e-16
sp|P13117|UBIQ_NEUCR Ubiquitin 84 1e-16
sp|P08565|UBIQ_TRYCR Ubiquitin 84 1e-16
sp|P61864|UBIQ_YEAST Ubiquitin >gi|59800425|sp|Q9Y848|UBIQ_... 83 2e-16
sp|P19848|UBIQ_COPCO Ubiquitin 83 2e-16
sp|P23398|UBIQ_STRPU Ubiquitin 83 2e-16
sp|P42740|UBIQ_AGLNE Ubiquitin 83 2e-16
sp|P42739|UBIQ_ACECL Ubiquitin 83 2e-16
sp|P49634|UBIQ_ACACA Ubiquitin 83 2e-16
sp|P14792|UBIQ_CAEEL Ubiquitin >gi|30580944|sp|P59669|UBIQ_... 82 3e-16
>sp|Q8SWD4|UBIQ_ENCCU Ubiquitin precursor
Length = 77
Score = 84.0 bits (206), Expect = 1e-16
Identities = 35/77 (45%), Positives = 58/77 (75%)
Frame = +3
Query: 21 MQIFAKTMDGKTVAFEVQKTEKVSDIKKKIQEKIGLSPDEQKLVYQGGILEDEKTVDEYQ 200
MQIF KT+ GKT+ EV+ ++ + ++K KIQ+K G+ PD+Q+L++ G LED +T+ +Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 201 IAEKSVINVVARLRGGF 251
I ++S +++V RLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGY 77
>sp|P13117|UBIQ_NEUCR Ubiquitin
Length = 76
Score = 83.6 bits (205), Expect = 1e-16
Identities = 35/76 (46%), Positives = 58/76 (76%)
Frame = +3
Query: 21 MQIFAKTMDGKTVAFEVQKTEKVSDIKKKIQEKIGLSPDEQKLVYQGGILEDEKTVDEYQ 200
MQIF KT+ GKT+ EV+ ++ + ++K+KIQ+K G+ PD+Q+L++ G LED +T+ +Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 201 IAEKSVINVVARLRGG 248
I ++S +++V RLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>sp|P08565|UBIQ_TRYCR Ubiquitin
Length = 76
Score = 83.6 bits (205), Expect = 1e-16
Identities = 36/76 (47%), Positives = 58/76 (76%)
Frame = +3
Query: 21 MQIFAKTMDGKTVAFEVQKTEKVSDIKKKIQEKIGLSPDEQKLVYQGGILEDEKTVDEYQ 200
MQIF KT+ GKT+A EV+ ++ + ++K KIQ+K G+ PD+Q+L++ G LED +T+ +Y
Sbjct: 1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 201 IAEKSVINVVARLRGG 248
I ++S +++V RLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>sp|P61864|UBIQ_YEAST Ubiquitin
sp|Q9Y848|UBIQ_KLULA Ubiquitin
sp|P0C014|UBIQ_SCHPO Ubiquitin
sp|P61863|UBIQ_CRYNE Ubiquitin
sp|P61862|UBIQ_CANAL Ubiquitin
Length = 76
Score = 83.2 bits (204), Expect = 2e-16
Identities = 35/76 (46%), Positives = 57/76 (75%)
Frame = +3
Query: 21 MQIFAKTMDGKTVAFEVQKTEKVSDIKKKIQEKIGLSPDEQKLVYQGGILEDEKTVDEYQ 200
MQIF KT+ GKT+ EV+ ++ + ++K KIQ+K G+ PD+Q+L++ G LED +T+ +Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 201 IAEKSVINVVARLRGG 248
I ++S +++V RLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>sp|P19848|UBIQ_COPCO Ubiquitin
Length = 76
Score = 82.8 bits (203), Expect = 2e-16
Identities = 35/76 (46%), Positives = 57/76 (75%)
Frame = +3
Query: 21 MQIFAKTMDGKTVAFEVQKTEKVSDIKKKIQEKIGLSPDEQKLVYQGGILEDEKTVDEYQ 200
MQIF KT+ GKT+ EV+ ++ + ++K KIQ+K G+ PD+Q+L++ G LED +T+ +Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 201 IAEKSVINVVARLRGG 248
I ++S +++V RLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>sp|P23398|UBIQ_STRPU Ubiquitin
Length = 76
Score = 82.8 bits (203), Expect = 2e-16
Identities = 35/76 (46%), Positives = 57/76 (75%)
Frame = +3
Query: 21 MQIFAKTMDGKTVAFEVQKTEKVSDIKKKIQEKIGLSPDEQKLVYQGGILEDEKTVDEYQ 200
MQIF KT+ GKT+ EV+ ++ + ++K KIQ+K G+ PD+Q+L++ G LED +T+ +Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 201 IAEKSVINVVARLRGG 248
I ++S +++V RLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>sp|P42740|UBIQ_AGLNE Ubiquitin
Length = 76
Score = 82.8 bits (203), Expect = 2e-16
Identities = 35/76 (46%), Positives = 57/76 (75%)
Frame = +3
Query: 21 MQIFAKTMDGKTVAFEVQKTEKVSDIKKKIQEKIGLSPDEQKLVYQGGILEDEKTVDEYQ 200
MQIF KT+ GKT+ EV+ ++ + ++K KIQ+K G+ PD+Q+L++ G LED +T+ +Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 201 IAEKSVINVVARLRGG 248
I ++S +++V RLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>sp|P42739|UBIQ_ACECL Ubiquitin
Length = 76
Score = 82.8 bits (203), Expect = 2e-16
Identities = 36/76 (47%), Positives = 57/76 (75%)
Frame = +3
Query: 21 MQIFAKTMDGKTVAFEVQKTEKVSDIKKKIQEKIGLSPDEQKLVYQGGILEDEKTVDEYQ 200
MQIF KT+ GKT+ EV+ ++ V ++K KIQ+K G+ PD+Q+L++ G LED +T+ +Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 201 IAEKSVINVVARLRGG 248
I ++S +++V RLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>sp|P49634|UBIQ_ACACA Ubiquitin
Length = 76
Score = 82.8 bits (203), Expect = 2e-16
Identities = 35/76 (46%), Positives = 58/76 (76%)
Frame = +3
Query: 21 MQIFAKTMDGKTVAFEVQKTEKVSDIKKKIQEKIGLSPDEQKLVYQGGILEDEKTVDEYQ 200
MQIF KT+ GKT+ EV+ ++ + ++K+KIQ+K G+ PD+Q+L++ G LED +T+ +Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 201 IAEKSVINVVARLRGG 248
I ++S +++V RLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>sp|P14792|UBIQ_CAEEL Ubiquitin
sp|P59669|UBIQ_GEOCY Ubiquitin
Length = 76
Score = 82.4 bits (202), Expect = 3e-16
Identities = 35/76 (46%), Positives = 57/76 (75%)
Frame = +3
Query: 21 MQIFAKTMDGKTVAFEVQKTEKVSDIKKKIQEKIGLSPDEQKLVYQGGILEDEKTVDEYQ 200
MQIF KT+ GKT+ EV+ ++ + ++K KIQ+K G+ PD+Q+L++ G LED +T+ +Y
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 201 IAEKSVINVVARLRGG 248
I ++S +++V RLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,164,957
Number of Sequences: 369166
Number of extensions: 476131
Number of successful extensions: 1918
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1913
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)