Planaria EST Database


DrC_02230

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02230
         (651 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34424|CCNT2_CAEEL  Cyclin-T1.2                                 34   0.38 
sp|P20306|ADH1_ORYSA  Alcohol dehydrogenase 1                      30   7.1  
sp|P00333|ADH1_MAIZE  Alcohol dehydrogenase 1                      30   7.1  
sp|Q07264|ADH1_ZEALU  Alcohol dehydrogenase 1                      30   7.1  
sp|Q59060|YG66_METJA  Hypothetical protein MJ1666                  29   9.3  
sp|Q83DY1|SYL_COXBU  Leucyl-tRNA synthetase (Leucine--tRNA l...    29   9.3  
sp|P59040|PYRG_CHLTE  CTP synthase (UTP--ammonia ligase) (CT...    29   9.3  
sp|P18332|ADH2_ORYSA  Alcohol dehydrogenase 2                      29   9.3  
sp|P47355|PKNS_MYCGE  Putative serine/threonine-protein kinase     29   9.3  
>sp|P34424|CCNT2_CAEEL Cyclin-T1.2
          Length = 555

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -2

Query: 338 YYKRIVFEYWHALDILLIIQWTIFHFCAHFSTICMQLASM**YHSYQY*DL 186
           Y   +   Y+ A D+L+I  W++ + CA  +T C+ +A+   +H+    D+
Sbjct: 185 YKDMVKTAYYMATDVLIITDWSVRYSCASIATACVNIAAF--FHNINMDDI 233
>sp|P20306|ADH1_ORYSA Alcohol dehydrogenase 1
          Length = 379

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 116 QGTVIEQYKQRTLDENCLELFLKKDLNIDSY 208
           +GT    YK RT   N +EL++KK+L ++ +
Sbjct: 318 KGTFFGNYKPRTDLPNVVELYMKKELEVEKF 348
>sp|P00333|ADH1_MAIZE Alcohol dehydrogenase 1
          Length = 379

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 116 QGTVIEQYKQRTLDENCLELFLKKDLNIDSY 208
           +GT    YK RT   N +EL++KK+L ++ +
Sbjct: 318 KGTFFGNYKPRTDLPNVVELYMKKELEVEKF 348
>sp|Q07264|ADH1_ZEALU Alcohol dehydrogenase 1
          Length = 293

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 116 QGTVIEQYKQRTLDENCLELFLKKDLNIDSY 208
           +GT    YK RT   N +EL++KK+L ++ +
Sbjct: 245 KGTFFGNYKPRTDLPNVVELYMKKELEVEKF 275
>sp|Q59060|YG66_METJA Hypothetical protein MJ1666
          Length = 465

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 12/33 (36%), Positives = 24/33 (72%)
 Frame = +2

Query: 119 GTVIEQYKQRTLDENCLELFLKKDLNIDSYDII 217
           G ++++ K++T      E F+K++LNID+Y++I
Sbjct: 62  GDIVKEVKEKT------ENFIKENLNIDNYEVI 88
>sp|Q83DY1|SYL_COXBU Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
          Length = 820

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 113 YQGTVIEQYKQRTLDENCLELF-LKKDLNIDSYDIITYLPAAYRLLKSVHKNGKLSTELL 289
           YQ T+IEQ  Q   +EN  E F +K+DL+ + +  ++ LP     L   H       +++
Sbjct: 5   YQPTLIEQLAQEYWEEN--ETFEVKEDLSREKFYCLSMLPYPSGDLHMGHVRNYTIGDVI 62

Query: 290 TKYLMH 307
            +Y +H
Sbjct: 63  ARYQIH 68
>sp|P59040|PYRG_CHLTE CTP synthase (UTP--ammonia ligase) (CTP synthetase)
          Length = 565

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 260 KNGKLSTELLTKYLMHANIRIQFVYNNQFEKNSETNG 370
           K G  + EL  K+L++   R ++ +NNQF K  E  G
Sbjct: 450 KEGSKAHELYGKFLINERHRHRYEFNNQFRKLFEEKG 486
>sp|P18332|ADH2_ORYSA Alcohol dehydrogenase 2
          Length = 379

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 116 QGTVIEQYKQRTLDENCLELFLKKDLNIDSY 208
           +GT    YK RT   N +EL++KK+L ++ +
Sbjct: 318 KGTFFGNYKPRTDLPNVVELYMKKELELEKF 348
>sp|P47355|PKNS_MYCGE Putative serine/threonine-protein kinase
          Length = 387

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
 Frame = +2

Query: 173 LFLKKDLNIDSYDIITYLPAAYRLLKSVHKNGKLSTELLTKYL---------MHANIRIQ 325
           LFL K+LN+ +Y  +      + +LK V KN K++     K+L          H+N+   
Sbjct: 30  LFLAKNLNLKNYGPVQKKQYGHLVLKVVQKNPKINENNWKKFLDEMVTTTRVHHSNLVKS 89

Query: 326 FVYNNQFEK 352
           F   N F K
Sbjct: 90  FDVVNPFLK 98
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,853,496
Number of Sequences: 369166
Number of extensions: 1288897
Number of successful extensions: 3130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3130
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)