Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02230
(651 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34424|CCNT2_CAEEL Cyclin-T1.2 34 0.38
sp|P20306|ADH1_ORYSA Alcohol dehydrogenase 1 30 7.1
sp|P00333|ADH1_MAIZE Alcohol dehydrogenase 1 30 7.1
sp|Q07264|ADH1_ZEALU Alcohol dehydrogenase 1 30 7.1
sp|Q59060|YG66_METJA Hypothetical protein MJ1666 29 9.3
sp|Q83DY1|SYL_COXBU Leucyl-tRNA synthetase (Leucine--tRNA l... 29 9.3
sp|P59040|PYRG_CHLTE CTP synthase (UTP--ammonia ligase) (CT... 29 9.3
sp|P18332|ADH2_ORYSA Alcohol dehydrogenase 2 29 9.3
sp|P47355|PKNS_MYCGE Putative serine/threonine-protein kinase 29 9.3
>sp|P34424|CCNT2_CAEEL Cyclin-T1.2
Length = 555
Score = 33.9 bits (76), Expect = 0.38
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -2
Query: 338 YYKRIVFEYWHALDILLIIQWTIFHFCAHFSTICMQLASM**YHSYQY*DL 186
Y + Y+ A D+L+I W++ + CA +T C+ +A+ +H+ D+
Sbjct: 185 YKDMVKTAYYMATDVLIITDWSVRYSCASIATACVNIAAF--FHNINMDDI 233
>sp|P20306|ADH1_ORYSA Alcohol dehydrogenase 1
Length = 379
Score = 29.6 bits (65), Expect = 7.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 116 QGTVIEQYKQRTLDENCLELFLKKDLNIDSY 208
+GT YK RT N +EL++KK+L ++ +
Sbjct: 318 KGTFFGNYKPRTDLPNVVELYMKKELEVEKF 348
>sp|P00333|ADH1_MAIZE Alcohol dehydrogenase 1
Length = 379
Score = 29.6 bits (65), Expect = 7.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 116 QGTVIEQYKQRTLDENCLELFLKKDLNIDSY 208
+GT YK RT N +EL++KK+L ++ +
Sbjct: 318 KGTFFGNYKPRTDLPNVVELYMKKELEVEKF 348
>sp|Q07264|ADH1_ZEALU Alcohol dehydrogenase 1
Length = 293
Score = 29.6 bits (65), Expect = 7.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 116 QGTVIEQYKQRTLDENCLELFLKKDLNIDSY 208
+GT YK RT N +EL++KK+L ++ +
Sbjct: 245 KGTFFGNYKPRTDLPNVVELYMKKELEVEKF 275
>sp|Q59060|YG66_METJA Hypothetical protein MJ1666
Length = 465
Score = 29.3 bits (64), Expect = 9.3
Identities = 12/33 (36%), Positives = 24/33 (72%)
Frame = +2
Query: 119 GTVIEQYKQRTLDENCLELFLKKDLNIDSYDII 217
G ++++ K++T E F+K++LNID+Y++I
Sbjct: 62 GDIVKEVKEKT------ENFIKENLNIDNYEVI 88
>sp|Q83DY1|SYL_COXBU Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
Length = 820
Score = 29.3 bits (64), Expect = 9.3
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 113 YQGTVIEQYKQRTLDENCLELF-LKKDLNIDSYDIITYLPAAYRLLKSVHKNGKLSTELL 289
YQ T+IEQ Q +EN E F +K+DL+ + + ++ LP L H +++
Sbjct: 5 YQPTLIEQLAQEYWEEN--ETFEVKEDLSREKFYCLSMLPYPSGDLHMGHVRNYTIGDVI 62
Query: 290 TKYLMH 307
+Y +H
Sbjct: 63 ARYQIH 68
>sp|P59040|PYRG_CHLTE CTP synthase (UTP--ammonia ligase) (CTP synthetase)
Length = 565
Score = 29.3 bits (64), Expect = 9.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 260 KNGKLSTELLTKYLMHANIRIQFVYNNQFEKNSETNG 370
K G + EL K+L++ R ++ +NNQF K E G
Sbjct: 450 KEGSKAHELYGKFLINERHRHRYEFNNQFRKLFEEKG 486
>sp|P18332|ADH2_ORYSA Alcohol dehydrogenase 2
Length = 379
Score = 29.3 bits (64), Expect = 9.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 116 QGTVIEQYKQRTLDENCLELFLKKDLNIDSY 208
+GT YK RT N +EL++KK+L ++ +
Sbjct: 318 KGTFFGNYKPRTDLPNVVELYMKKELELEKF 348
>sp|P47355|PKNS_MYCGE Putative serine/threonine-protein kinase
Length = 387
Score = 29.3 bits (64), Expect = 9.3
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Frame = +2
Query: 173 LFLKKDLNIDSYDIITYLPAAYRLLKSVHKNGKLSTELLTKYL---------MHANIRIQ 325
LFL K+LN+ +Y + + +LK V KN K++ K+L H+N+
Sbjct: 30 LFLAKNLNLKNYGPVQKKQYGHLVLKVVQKNPKINENNWKKFLDEMVTTTRVHHSNLVKS 89
Query: 326 FVYNNQFEK 352
F N F K
Sbjct: 90 FDVVNPFLK 98
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,853,496
Number of Sequences: 369166
Number of extensions: 1288897
Number of successful extensions: 3130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3130
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)