Planaria EST Database


DrC_02224

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02224
         (726 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R5H1|UBP15_MOUSE  Ubiquitin carboxyl-terminal hydrolase...   148   2e-35
sp|Q9Y4E8|UBP15_HUMAN  Ubiquitin carboxyl-terminal hydrolase...   147   2e-35
sp|P39538|UBP12_YEAST  Ubiquitin carboxyl-terminal hydrolase...   144   2e-34
sp|P35123|UBP4_MOUSE  Ubiquitin carboxyl-terminal hydrolase ...   142   7e-34
sp|Q13107|UBP4_HUMAN  Ubiquitin carboxyl-terminal hydrolase ...   141   2e-33
sp|P51784|UBP11_HUMAN  Ubiquitin carboxyl-terminal hydrolase...   135   9e-32
sp|O60079|UBP12_SCHPO  Probable ubiquitin carboxyl-terminal ...   134   2e-31
sp|Q99K46|UBP11_MOUSE  Ubiquitin carboxyl-terminal hydrolase...   131   2e-30
sp|O22207|UBP5_ARATH  Ubiquitin carboxyl-terminal hydrolase ...   130   4e-30
sp|Q01988|UBP11_CANFA  Ubiquitin carboxyl-terminal hydrolase...   125   9e-29
>sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 (Ubiquitin thiolesterase 15)
            (Ubiquitin-specific processing protease 15)
            (Deubiquitinating enzyme 15)
          Length = 981

 Score =  148 bits (373), Expect = 2e-35
 Identities = 73/176 (41%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
 Frame = +1

Query: 10   SLQHQP-----LNIENCVNEFIKTEKLGINDLWYXXXXXXXXXXXXXFDLWQLPKVLILH 174
            S++++P     + +++C+  F   EKLG  D WY              DLW LP VL++H
Sbjct: 775  SVEYKPPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVH 834

Query: 175  LKRFRSGSYRRDKIDTVVEFPLTDLDLSKFVLDAHKDSDDHSFQNDDEIYDLVAVSNHMG 354
            LKRF    Y RDK+DT+V+FP++DLD+S+F+++ +              Y+L+AVSNH G
Sbjct: 835  LKRFSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCR---------YNLIAVSNHYG 885

Query: 355  GLGGGHYTAFAKNFIDNNWYLFDDSHTSRISPENVQTKTAYVLVYVSKSQLNSTRY 522
            G+GGGHYTAFAKN  D  WY FDDS  S  S + + +K AYVL Y  +   + T +
Sbjct: 886  GMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTFSGTGF 941
>sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 (Ubiquitin thiolesterase 15)
            (Ubiquitin-specific processing protease 15)
            (Deubiquitinating enzyme 15) (Unph-2) (Unph4)
          Length = 981

 Score =  147 bits (372), Expect = 2e-35
 Identities = 73/176 (41%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
 Frame = +1

Query: 10   SLQHQP-----LNIENCVNEFIKTEKLGINDLWYXXXXXXXXXXXXXFDLWQLPKVLILH 174
            S++++P     + +++C+  F   EKLG  D WY              DLW LP VL++H
Sbjct: 775  SVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVH 834

Query: 175  LKRFRSGSYRRDKIDTVVEFPLTDLDLSKFVLDAHKDSDDHSFQNDDEIYDLVAVSNHMG 354
            LKRF    Y RDK+DT+V+FP+ DLD+S+F+++ +              Y+L+AVSNH G
Sbjct: 835  LKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCR---------YNLIAVSNHYG 885

Query: 355  GLGGGHYTAFAKNFIDNNWYLFDDSHTSRISPENVQTKTAYVLVYVSKSQLNSTRY 522
            G+GGGHYTAFAKN  D  WY FDDS  S  S + + +K AYVL Y  +   + T +
Sbjct: 886  GMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTFSGTGF 941
>sp|P39538|UBP12_YEAST Ubiquitin carboxyl-terminal hydrolase 12 (Ubiquitin thiolesterase 12)
            (Ubiquitin-specific processing protease 12)
            (Deubiquitinating enzyme 12)
          Length = 1254

 Score =  144 bits (364), Expect = 2e-34
 Identities = 72/161 (44%), Positives = 95/161 (59%)
 Frame = +1

Query: 16   QHQPLNIENCVNEFIKTEKLGINDLWYXXXXXXXXXXXXXFDLWQLPKVLILHLKRFRSG 195
            + + + +++C+  F K E LG+ D WY               LW  P +L++HLKRF S 
Sbjct: 958  KERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQ 1017

Query: 196  SYRRDKIDTVVEFPLTDLDLSKFVLDAHKDSDDHSFQNDDEIYDLVAVSNHMGGLGGGHY 375
                DKID  V FP+TDLDLS++V+  +KD D         IYDL AV NH GGLGGGHY
Sbjct: 1018 RSFSDKIDATVNFPITDLDLSRYVV--YKD-DPRGL-----IYDLYAVDNHYGGLGGGHY 1069

Query: 376  TAFAKNFIDNNWYLFDDSHTSRISPENVQTKTAYVLVYVSK 498
            TA+ KNF DN WY FDDS  +  +PEN    +AY+L Y+ +
Sbjct: 1070 TAYVKNFADNKWYYFDDSRVTETAPENSIAGSAYLLFYIRR 1110
>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 (Ubiquitin thiolesterase 4)
            (Ubiquitin-specific processing protease 4)
            (Deubiquitinating enzyme 4) (Ubiquitous nuclear protein)
          Length = 962

 Score =  142 bits (359), Expect = 7e-34
 Identities = 74/172 (43%), Positives = 95/172 (55%)
 Frame = +1

Query: 34   IENCVNEFIKTEKLGINDLWYXXXXXXXXXXXXXFDLWQLPKVLILHLKRFRSGSYRRDK 213
            +  C+  F   E LG +D WY             FDLW LPK+L++HLKRF    Y RDK
Sbjct: 777  LRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDK 836

Query: 214  IDTVVEFPLTDLDLSKFVLDAHKDSDDHSFQNDDEIYDLVAVSNHMGGLGGGHYTAFAKN 393
            +DTVVEFP+  L++S+FV D               +YDL+AVSNH G +G GHYTA+AKN
Sbjct: 837  LDTVVEFPVRALNMSEFVCDR---------SARPYVYDLIAVSNHYGAMGVGHYTAYAKN 887

Query: 394  FIDNNWYLFDDSHTSRISPENVQTKTAYVLVYVSKSQLNSTRYSLNQCLNDD 549
             ++  WY FDDS  S  S + + TK AYVL Y  +    S+  SL      D
Sbjct: 888  RLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQRRDDECSSTSSLGSFPGSD 939
>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 (Ubiquitin thiolesterase 4)
            (Ubiquitin-specific processing protease 4)
            (Deubiquitinating enzyme 4) (Ubiquitous nuclear protein
            homolog)
          Length = 963

 Score =  141 bits (356), Expect = 2e-33
 Identities = 69/152 (45%), Positives = 91/152 (59%)
 Frame = +1

Query: 34   IENCVNEFIKTEKLGINDLWYXXXXXXXXXXXXXFDLWQLPKVLILHLKRFRSGSYRRDK 213
            + +C+  F   E LG +D WY             FDLW LPK+L++HLKRF    Y RDK
Sbjct: 778  LRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDK 837

Query: 214  IDTVVEFPLTDLDLSKFVLDAHKDSDDHSFQNDDEIYDLVAVSNHMGGLGGGHYTAFAKN 393
            +DTVVEFP+  L++S+FV          +      +YDL+AVSNH G +G GHYTA+AKN
Sbjct: 838  LDTVVEFPIRGLNMSEFVC---------NLSARPYVYDLIAVSNHYGAMGVGHYTAYAKN 888

Query: 394  FIDNNWYLFDDSHTSRISPENVQTKTAYVLVY 489
             ++  WY FDDS+ S  S + + TK AYVL Y
Sbjct: 889  KLNGKWYYFDDSNVSLASEDQIVTKAAYVLFY 920
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 (Ubiquitin thiolesterase 11)
            (Ubiquitin-specific processing protease 11)
            (Deubiquitinating enzyme 11)
          Length = 920

 Score =  135 bits (341), Expect = 9e-32
 Identities = 63/161 (39%), Positives = 93/161 (57%)
 Frame = +1

Query: 7    YSLQHQPLNIENCVNEFIKTEKLGINDLWYXXXXXXXXXXXXXFDLWQLPKVLILHLKRF 186
            Y ++  P+ ++ C+  F   E L   + WY              DLW LP++LI+HLKRF
Sbjct: 729  YVMKKAPVRLQECIELFTTVETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRF 788

Query: 187  RSGSYRRDKIDTVVEFPLTDLDLSKFVLDAHKDSDDHSFQNDDEIYDLVAVSNHMGGLGG 366
                + R+K+DT+VEFP+ DLD S+FV+    +S+   ++     YDL+AVSNH GG+  
Sbjct: 789  SYTKFSREKLDTLVEFPIRDLDFSEFVIQPQNESNPELYK-----YDLIAVSNHYGGMRD 843

Query: 367  GHYTAFAKNFIDNNWYLFDDSHTSRISPENVQTKTAYVLVY 489
            GHYT FA N     W+ FDD+  S ++   +++K AYVL Y
Sbjct: 844  GHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFY 884
>sp|O60079|UBP12_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 12 (Ubiquitin
            thiolesterase 12) (Ubiquitin-specific processing protease
            12) (Deubiquitinating enzyme 12)
          Length = 979

 Score =  134 bits (338), Expect = 2e-31
 Identities = 70/158 (44%), Positives = 96/158 (60%)
 Frame = +1

Query: 28   LNIENCVNEFIKTEKLGINDLWYXXXXXXXXXXXXXFDLWQLPKVLILHLKRFRSGSYRR 207
            + + +C++EF KTE+LG  D WY              ++W+ P++LI HLKRF S    R
Sbjct: 825  ITLNDCLDEFEKTEQLGEEDPWYCPTCKEFRQASKQMEIWRCPEILIFHLKRFSSERRFR 884

Query: 208  DKIDTVVEFPLTDLDLSKFVLDAHKDSDDHSFQNDDEIYDLVAVSNHMGGLGGGHYTAFA 387
            DKID +VEFP+ +LD+S     ++K S+    +N   IY+L AV NH GGLGGGHYTAFA
Sbjct: 885  DKIDDLVEFPIDNLDMSMRT-GSYKLSEK---ENPKLIYELYAVDNHYGGLGGGHYTAFA 940

Query: 388  KNFIDNNWYLFDDSHTSRISPENVQTKTAYVLVYVSKS 501
            KN  +  +Y FDDS  + + PE   T  AY+L Y  K+
Sbjct: 941  KNPDNGQFYCFDDSRVTPVCPEETVTSAAYLLFYRRKT 978
>sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 (Ubiquitin thiolesterase 11)
            (Ubiquitin-specific processing protease 11)
            (Deubiquitinating enzyme 11)
          Length = 797

 Score =  131 bits (330), Expect = 2e-30
 Identities = 63/161 (39%), Positives = 90/161 (55%)
 Frame = +1

Query: 7    YSLQHQPLNIENCVNEFIKTEKLGINDLWYXXXXXXXXXXXXXFDLWQLPKVLILHLKRF 186
            Y L+  P+ ++ C+  F   E L   + WY              DLW LP+VLI+HLKRF
Sbjct: 607  YMLKKSPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRF 666

Query: 187  RSGSYRRDKIDTVVEFPLTDLDLSKFVLDAHKDSDDHSFQNDDEIYDLVAVSNHMGGLGG 366
                  R+K+DT+V+FP+ DLD S+FV+    +S    ++     YDL+AVSNH GG+  
Sbjct: 667  SFSKISREKLDTLVQFPIRDLDFSEFVIKPKNESSPDLYK-----YDLIAVSNHYGGMRD 721

Query: 367  GHYTAFAKNFIDNNWYLFDDSHTSRISPENVQTKTAYVLVY 489
            GHYT FA N     W+  DD+  S ++   +++K AYVL Y
Sbjct: 722  GHYTTFACNKDSGQWHYLDDNSVSPVNENQIESKAAYVLFY 762
>sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 (Ubiquitin thiolesterase 5)
            (Ubiquitin-specific processing protease 5)
            (Deubiquitinating enzyme 5) (AtUBP5)
          Length = 924

 Score =  130 bits (327), Expect = 4e-30
 Identities = 62/160 (38%), Positives = 97/160 (60%)
 Frame = +1

Query: 22   QPLNIENCVNEFIKTEKLGINDLWYXXXXXXXXXXXXXFDLWQLPKVLILHLKRFRSGSY 201
            +PL++  C+  F++ E L  +++W+              DLW+LP+VL++HLKRF     
Sbjct: 766  EPLSLYACLEAFLREEPLVPDEMWFCPQCNERRQASKKLDLWRLPEVLVIHLKRFSYSRS 825

Query: 202  RRDKIDTVVEFPLTDLDLSKFVLDAHKDSDDHSFQNDDEIYDLVAVSNHMGGLGGGHYTA 381
             + K++T V FP+ DLDL+K+V + +         +  ++Y+L A++NH GG+G GHYTA
Sbjct: 826  MKHKLETFVNFPIHDLDLTKYVANKNL--------SQPQLYELYALTNHYGGMGSGHYTA 877

Query: 382  FAKNFIDNNWYLFDDSHTSRISPENVQTKTAYVLVYVSKS 501
              K   D+ WY FDDSH S I+ ++V++  AYVL Y  KS
Sbjct: 878  HIKLLDDSRWYNFDDSHISHINEDDVKSGAAYVLFYRRKS 917
>sp|Q01988|UBP11_CANFA Ubiquitin carboxyl-terminal hydrolase 11 (Ubiquitin thiolesterase
           11) (Ubiquitin-specific processing protease 11)
           (Deubiquitinating enzyme 11)
          Length = 445

 Score =  125 bits (315), Expect = 9e-29
 Identities = 63/161 (39%), Positives = 89/161 (55%)
 Frame = +1

Query: 7   YSLQHQPLNIENCVNEFIKTEKLGINDLWYXXXXXXXXXXXXXFDLWQLPKVLILHLKRF 186
           Y L+  P+ ++ C+  F   E L   + W+              DLW LP+ LI+HLKRF
Sbjct: 254 YVLKKAPVRLQECIELFTTVETLEKENPWFCPTCKQHQLATKKLDLWMLPETLIIHLKRF 313

Query: 187 RSGSYRRDKIDTVVEFPLTDLDLSKFVLDAHKDSDDHSFQNDDEIYDLVAVSNHMGGLGG 366
               + R+K+DT+VEFP+ DLD S+FV+    +S    ++     YDL+AVSNH GGL  
Sbjct: 314 SYTKFSREKLDTLVEFPIRDLDFSEFVIKPQNESAPELYK-----YDLIAVSNHYGGLRD 368

Query: 367 GHYTAFAKNFIDNNWYLFDDSHTSRISPENVQTKTAYVLVY 489
           GHYT FA N        FDD+  S ++   +++K AYVL Y
Sbjct: 369 GHYTTFACNKDSGQSDYFDDNSVSPVTENQIESKAAYVLFY 409
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,710,513
Number of Sequences: 369166
Number of extensions: 1609558
Number of successful extensions: 4367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4292
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6510836890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)