Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02206
(847 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O51066|PARC_BORBU Topoisomerase IV subunit A 36 0.12
sp|Q96L91|EP400_HUMAN E1A binding protein p400 (p400 kDa SW... 32 1.7
sp|Q5GAB0|MATK_OTACA Maturase K (Intron maturase) 32 2.2
sp|Q65228|VPRT_ASFM2 Polyprotein processing peptidase 32 2.9
sp|Q09345|YRR2_CAEEL Hypothetical protein R144.2 in chromos... 32 2.9
sp|Q7YKQ5|MATK_CAMRA Maturase K (Intron maturase) 31 3.8
sp|Q9VTG7|B3G2P_DROME Galactosylgalactosylxylosylprotein 3-... 31 3.8
sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex II protein ... 31 3.8
sp|Q5I6K1|MATK_MIMAU Maturase K (Intron maturase) 30 6.4
sp|Q10124|PQE1_CAEEL Putative RNA exonuclease pqe-1 (PolyQ ... 30 8.4
>sp|O51066|PARC_BORBU Topoisomerase IV subunit A
Length = 626
Score = 36.2 bits (82), Expect = 0.12
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 4/140 (2%)
Frame = -3
Query: 578 NIKILRRTEKSFNSPFTDIRWNSIHYIDLNWTLYEKLYTHRKS----ANSNLMHISINSH 411
+IKIL + KS NS + IR SI++IDL Y K + + + N+ I+ +
Sbjct: 411 DIKILNKELKSINSNISSIRGYSINFIDLLLAKYSKEHQRKTKISLIKSKNVKEIATKNM 470
Query: 410 IVRPTINNQFVTRSTKTSYIKSTINFYMRKSIWRNFKRNIVNIDFNIWTIKPNCMKFIIN 231
V + F S ++Y + ++R + NI+ + K N + +
Sbjct: 471 KVYLNLAEGFAGTSLFDGEFIGNASYYDKILVFRENSYVLKNIEDKTFIDKKNVCALVYD 530
Query: 230 EYTRLDSIQM*GMFNSIDSY 171
+ I FN +D++
Sbjct: 531 INNSKEQIFSIIYFNRLDNF 550
>sp|Q96L91|EP400_HUMAN E1A binding protein p400 (p400 kDa SWI2/SNF2-related protein) (Domino
homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide
repeat-containing gene 12 protein)
Length = 3160
Score = 32.3 bits (72), Expect = 1.7
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 582 PLNPLRNQKLQDEQSILLRNELAAIFDRMNSQNIVVKSEPPPVIQKPPDTAPPTP 746
PL P++ L+ E+ + E A+ D+ +Q V PPP Q PP P P
Sbjct: 2508 PLPPIQVASLRAER---IAKEKKALADQQKAQQPAVAQPPPPQPQPPPPPQQPPP 2559
>sp|Q5GAB0|MATK_OTACA Maturase K (Intron maturase)
Length = 509
Score = 32.0 bits (71), Expect = 2.2
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = -3
Query: 374 RSTKTSYIKSTINFYMRKSIWRNFKRNIVNIDFNIWTIKPNCMKFIINEYTRLDSIQM*G 195
RST + + I FY + N + + N+W +K CM ++ Y R + G
Sbjct: 233 RSTSSGLLLERIYFYAKMERLVNLFVKVKDFQVNLWLVKEPCMHYV--RYQRKSILASKG 290
Query: 194 MFNSIDSYCSRSIIEWTSGQ*TRISSNWWHLRK-SIN 87
+ I+ + S + W S W+H R+ SIN
Sbjct: 291 VSLLINKWKSYLVAFWQWH-----FSMWFHPRRISIN 322
>sp|Q65228|VPRT_ASFM2 Polyprotein processing peptidase
Length = 273
Score = 31.6 bits (70), Expect = 2.9
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 629 NRLFILQFLISERIKRWNIKILRRTEKSFNSPFTDIRWNSIHY 501
N + F I E ++RW IK K FN PF+ + + SIHY
Sbjct: 84 NTGLLTNFNIDETLQRWAIKYT----KFFNCPFSMMDFESIHY 122
>sp|Q09345|YRR2_CAEEL Hypothetical protein R144.2 in chromosome III
Length = 823
Score = 31.6 bits (70), Expect = 2.9
Identities = 26/106 (24%), Positives = 41/106 (38%)
Frame = +3
Query: 141 RCPFYDASRTITIDGIKHTLHLDRIQPCIFVNNELHAVRFYCPNIEVNIDNVTFEISPYG 320
R F R + IDGI H L D + ++ H V+F P+ E+ I F+
Sbjct: 440 RIYFAGPPRNLVIDGIPHLLQFDTPTQIDILGSK-HMVKFGAPSRELYIGGHPFK----- 493
Query: 321 FAHIKINRRFYIACLGGPGHELIINGWPYNVRIDGNMHQITVSGFP 458
GGP ING + +R+ G+ ++ + P
Sbjct: 494 ------------GQFGGPPIIATINGRRHEIRLTGSAPEVRIEPEP 527
>sp|Q7YKQ5|MATK_CAMRA Maturase K (Intron maturase)
Length = 511
Score = 31.2 bits (69), Expect = 3.8
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Frame = -3
Query: 491 NWTLYEKLYTHRKSA------NSNLMHISINSHIVRPTINNQFVTRSTKTSYIKSTINFY 330
NWT L T +K++ N L NSH+ + FV ++S+++ST +
Sbjct: 187 NWT---SLITPKKASSSFSKRNQRLFLFLYNSHVCE--YESVFVFLRNQSSHLRSTSSGV 241
Query: 329 MRKSIWRNFK-RNIVNI-----DF--NIWTIKPNCMKFI 237
+ + I+ K ++VN+ DF N+W +K CM +I
Sbjct: 242 LLERIYFYGKIESLVNVFGKVKDFQANLWLVKEPCMHYI 280
>sp|Q9VTG7|B3G2P_DROME Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P
(Beta-1,3-glucuronyltransferase P)
(Glucuronosyltransferase-P) (GlcAT-P)
(UDP-glucuronosyltransferase-P) (DmGlcAT-BSII)
Length = 479
Score = 31.2 bits (69), Expect = 3.8
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +3
Query: 405 YNVRIDGNMHQITVSGFPVSVQFLVQRPIQVNVMNAIPPYICEWAVKGFFGSPQYLNIPP 584
Y+ I G + + ++GF VSV+FL +RP NA P+ + GF S + P
Sbjct: 379 YDGWIGGRKYPVDMAGFAVSVKFLKERP------NAQMPFKPGYEEDGFLRS-----LAP 427
Query: 585 LNPLRNQKLQDE 620
L+ + L DE
Sbjct: 428 LDDAEIELLADE 439
>sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex II protein Pcf11
Length = 1654
Score = 31.2 bits (69), Expect = 3.8
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Frame = +3
Query: 573 NIPPLNPLRNQKLQDEQSILLRNELAAIFDRMNSQNIVVKSEPPPVIQKPPDTAPP---- 740
NIP P+ +Q Q +L F + Q + V + P +Q P P
Sbjct: 1304 NIPA--PMTVGNIQASQQVLSGVAQPVAFGQ-GQQFLPVHPQNPGFVQNPSGALPKAYPD 1360
Query: 741 ---TPIDVHDLFQKLVATGIILPSKSNEIKLDITK 836
+ +DV++LF KL+ TGI+ S+++ +++
Sbjct: 1361 NHLSQVDVNELFSKLLKTGILKLSQTDSATTQVSE 1395
>sp|Q5I6K1|MATK_MIMAU Maturase K (Intron maturase)
Length = 511
Score = 30.4 bits (67), Expect = 6.4
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Frame = -3
Query: 491 NWTLYEKLYTHRKSA------NSNLMHISINSHIVRPTI------NNQFVTRSTKTSYIK 348
NW L T +K++ N L NSH+ N RST + ++
Sbjct: 187 NWN---SLITPKKASSSFSKRNQRLFLFLYNSHVYEYESIFGFLRNQSSHLRSTSSGVLR 243
Query: 347 STINFYMRKSIWRNFKRNIVNIDFNIWTIKPNCMKFI 237
I+FY + N + + N+W +K CM +I
Sbjct: 244 ERIHFYGKIERLVNVFVKVKDFQANLWLVKEPCMHYI 280
>sp|Q10124|PQE1_CAEEL Putative RNA exonuclease pqe-1 (PolyQ enhancer protein 1)
Length = 1647
Score = 30.0 bits (66), Expect = 8.4
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 579 PPLNPLRNQKLQDEQSILLRNELAAIFDRMNSQNIVVKSEPPPVIQKPPDTAPP 740
PPL+P + +Q L+ + A +M QN PPPV Q+PP PP
Sbjct: 497 PPLSPDQMNMQMFQQRALMMQQQAM---QMQMQN------PPPVHQQPPPQQPP 541
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,046,990
Number of Sequences: 369166
Number of extensions: 2197295
Number of successful extensions: 7820
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7757
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)