Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02186
(499 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 (RNA-binding protein... 36 0.058
sp|P70318|TIAR_MOUSE Nucleolysin TIAR (TIA-1 related protein) 35 0.098
sp|Q01085|TIAR_HUMAN Nucleolysin TIAR (TIA-1 related protein) 35 0.098
sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 (RNA-bin... 30 2.4
sp|P44390|CATA_HAEIN Catalase 30 3.2
sp|P25299|RNA15_YEAST mRNA 3'-end processing protein RNA15 30 3.2
sp|P46582|YLB8_CAEEL Hypothetical protein C34E10.8 in chrom... 30 3.2
sp|P08079|GDB0_WHEAT Gamma-gliadin precursor 30 4.1
sp|Q7VNH1|CLPB_HAEDU Chaperone clpB 29 5.4
sp|Q8TAZ6|CKLF2_HUMAN Chemokine-like factor superfamily mem... 29 7.0
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 (RNA-binding protein TIA-1)
Length = 386
Score = 35.8 bits (81), Expect = 0.058
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Frame = +1
Query: 1 YYSHEAAANAIYQMNGFWLDSVELKCSWAIKSEKPSKKVKFNRQPVKKPRKHVLPKSFSN 180
+ SHE+AA+AI +NG ++ +KC W ++ V+ Q P + + N
Sbjct: 256 FSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPPTYGQWGQWYGN 315
Query: 181 VKTRQTYESNF----DSGYGGLPQFQQSFINPYQEQPF--PSYSLP 300
+ Y N G G P QQ F P+ P+YS+P
Sbjct: 316 AQQIGQYVPNGWQVPAYGVYGQPWSQQGFNQTQSSAPWMGPNYSVP 361
Score = 30.0 bits (66), Expect = 3.2
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 1 YYSHEAAANAIYQMNGFWLDSVELKCSWAIKSEKPSKKVKFNRQPVKKPRKHVLPKSFSN 180
+++ A NAI QM G WL +++ +WA + + P+ K + + V+ +S N
Sbjct: 154 FFNKWDAENAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESNTKQLSYDEVVSQSSPN 212
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR (TIA-1 related protein)
Length = 392
Score = 35.0 bits (79), Expect = 0.098
Identities = 26/100 (26%), Positives = 40/100 (40%)
Frame = +1
Query: 1 YYSHEAAANAIYQMNGFWLDSVELKCSWAIKSEKPSKKVKFNRQPVKKPRKHVLPKSFSN 180
+ +HE+AA+AI +NG ++ +KC W E P + K+F
Sbjct: 264 FSTHESAAHAIVSVNGTTIEGHVVKCYWG--KESPD-----------------MTKNFQQ 304
Query: 181 VKTRQTYESNFDSGYGGLPQFQQSFINPYQEQPFPSYSLP 300
V Q + YG Q+ Q N +Q P+ Y P
Sbjct: 305 VDYSQW--GQWSQVYGNPQQYGQYMANGWQVPPYGVYGQP 342
Score = 29.3 bits (64), Expect = 5.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 1 YYSHEAAANAIYQMNGFWLDSVELKCSWAIKSEKPSKKVK 120
+Y+ A NAI M G WL +++ +WA + K +
Sbjct: 162 FYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ 201
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR (TIA-1 related protein)
Length = 375
Score = 35.0 bits (79), Expect = 0.098
Identities = 26/100 (26%), Positives = 40/100 (40%)
Frame = +1
Query: 1 YYSHEAAANAIYQMNGFWLDSVELKCSWAIKSEKPSKKVKFNRQPVKKPRKHVLPKSFSN 180
+ +HE+AA+AI +NG ++ +KC W E P + K+F
Sbjct: 247 FSTHESAAHAIVSVNGTTIEGHVVKCYWG--KESPD-----------------MTKNFQQ 287
Query: 181 VKTRQTYESNFDSGYGGLPQFQQSFINPYQEQPFPSYSLP 300
V Q + YG Q+ Q N +Q P+ Y P
Sbjct: 288 VDYSQW--GQWSQVYGNPQQYGQYMANGWQVPPYGVYGQP 325
Score = 30.4 bits (67), Expect = 2.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 1 YYSHEAAANAIYQMNGFWLDSVELKCSWAIKSEKPSKKVKFN 126
+Y+ A NAI M G WL +++ +WA + K + N
Sbjct: 145 FYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 186
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)
(p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
(p15-TIA-1)]
Length = 386
Score = 30.4 bits (67), Expect = 2.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 1 YYSHEAAANAIYQMNGFWLDSVELKCSW 84
+ SHE+AA+AI +NG ++ +KC W
Sbjct: 256 FNSHESAAHAIVSVNGTTIEGHVVKCYW 283
Score = 29.3 bits (64), Expect = 5.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 1 YYSHEAAANAIYQMNGFWLDSVELKCSWAIKSEKPSK 111
+++ A NAI QM G WL +++ +WA + K
Sbjct: 154 FFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK 190
>sp|P44390|CATA_HAEIN Catalase
Length = 508
Score = 30.0 bits (66), Expect = 3.2
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Frame = +1
Query: 115 VKFNRQPVKKPRKHVLPKSFSNVKTRQTYESNFDSGYGGLPQFQQSFINPYQEQP---FP 285
V + + PV +PR V SN + Q D YG LP ++ + + +Q+QP P
Sbjct: 356 VNYRQIPVNRPRCPV----HSNQRDGQ---GRVDGNYGSLPHYEPNSFSQWQQQPDFAEP 408
Query: 286 SYSLPAYPNQYQY-DDDYILLSQEPIEIHLMSA 381
+ + Y +DD SQ +LM+A
Sbjct: 409 PLRINGDAAHWDYRNDDNDYFSQPRALFNLMNA 441
>sp|P25299|RNA15_YEAST mRNA 3'-end processing protein RNA15
Length = 296
Score = 30.0 bits (66), Expect = 3.2
Identities = 22/91 (24%), Positives = 39/91 (42%)
Frame = +1
Query: 13 EAAANAIYQMNGFWLDSVELKCSWAIKSEKPSKKVKFNRQPVKKPRKHVLPKSFSNVKTR 192
E++A+A+ +NG+ L S LKC ++ S+ + +Q ++N+
Sbjct: 70 ESSASAVRNLNGYQLGSRFLKCGYSSNSDISGVSQQQQQQ-------------YNNINGN 116
Query: 193 QTYESNFDSGYGGLPQFQQSFINPYQEQPFP 285
N ++ G P FQ S + Q FP
Sbjct: 117 NNNNGNNNNNSNG-PDFQNSGNANFLSQKFP 146
>sp|P46582|YLB8_CAEEL Hypothetical protein C34E10.8 in chromosome III
Length = 1024
Score = 30.0 bits (66), Expect = 3.2
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +1
Query: 55 LDSVELKCSWAIKSEKPSKKVKFNRQPVKKPRKHVLPKSFSNVKTRQTYESNFDSGYGGL 234
+ V+ KCS+ IKS ++ +P +H PK N T S+ D G
Sbjct: 292 IGGVDPKCSFHIKSSAIAETTSCPCNRCVQPGEHASPKDEKNSITCYLNSSDDDEPTLGN 351
Query: 235 PQFQQSFINPYQEQPFPSYSLPA-YPNQYQ 321
+S ++P Q+ S +L A P +YQ
Sbjct: 352 LSRIESMVSPMQQFSNQSNTLTAPLPRRYQ 381
>sp|P08079|GDB0_WHEAT Gamma-gliadin precursor
Length = 251
Score = 29.6 bits (65), Expect = 4.1
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 103 PSKKVKF-NRQPVKKPRKHVLPKSFSNV-KTRQTYESNFDSGYGGLPQFQQSFINPYQEQ 276
PS +V++ +QPV +P + + + +QT+ + Q QQ F+ P +Q
Sbjct: 25 PSSQVQWPQQQPVPQPHQPFSQQPQQTFPQPQQTFPHQPQQQFPQPQQPQQQFLQP--QQ 82
Query: 277 PFPSYSLPAYPNQYQ 321
PFP YP Q Q
Sbjct: 83 PFPQQPQQPYPQQPQ 97
>sp|Q7VNH1|CLPB_HAEDU Chaperone clpB
Length = 856
Score = 29.3 bits (64), Expect = 5.4
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +1
Query: 202 ESNFDSGYGGLP---QFQQSFINPYQEQPFPSYSLPAYPNQYQYDDDYILLSQ 351
++ FDS +G P QQ NP +Q LP P Y D++I+ Q
Sbjct: 804 QAGFDSLFGARPLKRAIQQELENPLAQQILSGKLLPNNPVIIDYQDNHIIAKQ 856
>sp|Q8TAZ6|CKLF2_HUMAN Chemokine-like factor superfamily member 2
Length = 248
Score = 28.9 bits (63), Expect = 7.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 94 SEKPSKKVKFNRQPVKKPRKHVLPK 168
S+KP K V+ +++P KP+K V PK
Sbjct: 35 SDKPQKAVQDHKEPSDKPQKAVQPK 59
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,415,250
Number of Sequences: 369166
Number of extensions: 1035621
Number of successful extensions: 3005
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3003
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3119256630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)