Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02169
(382 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P58151|YCXC_ASTLO Hypothetical 51.9 kDa protein in rps4-... 33 0.20
sp|P62367|SYH1_BACC1 Histidyl-tRNA synthetase 1 (Histidine-... 29 3.8
sp|P27895|CIN8_YEAST Kinesin-like protein CIN8 29 3.8
sp|P13612|ITA4_HUMAN Integrin alpha-4 precursor (Integrin a... 28 6.5
sp|Q60301|YY02_METJA Hypothetical adenine-specific methylas... 28 8.5
sp|Q8DC96|ICIA_VIBVU Chromosome initiation inhibitor (OriC ... 28 8.5
sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1 28 8.5
sp|Q7MHL5|ICIA_VIBVY Chromosome initiation inhibitor (OriC ... 28 8.5
>sp|P58151|YCXC_ASTLO Hypothetical 51.9 kDa protein in rps4-rps11 intergenic region
(ORF426)
Length = 426
Score = 33.1 bits (74), Expect = 0.20
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -3
Query: 164 DS*YFLKFCYYIGHSWINSSQ*NRPILICQFNSNRYPYFSYFCADHFIY 18
D +F+ Y +I+ S+ NRP I + SN P+FSY + FIY
Sbjct: 341 DRPFFIDRSKYNKPFFIDKSKYNRPFFIDKSKSNNIPFFSYQKKEPFIY 389
>sp|P62367|SYH1_BACC1 Histidyl-tRNA synthetase 1 (Histidine--tRNA ligase 1) (HisRS 1)
Length = 436
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 98 FTVMNLSKNVQYNN-KILKNIMNQFNI--QRFPN*IIKLGNIYFINFFQISRDFI 253
F +NL +QYNN K+L I+ NI +R + I+ L I I + +D +
Sbjct: 148 FRTLNLEVTIQYNNRKLLNGILESINIPTERTSDVILSLDKIEKIGIDGVRKDVL 202
>sp|P27895|CIN8_YEAST Kinesin-like protein CIN8
Length = 1038
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Frame = +1
Query: 142 NFKKYYESV*--YSEISKLNN*VRQYLLYQFFSN 237
+F+K+Y+++ S+IS+ NN ++QYL FF N
Sbjct: 753 DFQKFYKNIAENLSDISEENNNMKQYLKNHFFKN 786
>sp|P13612|ITA4_HUMAN Integrin alpha-4 precursor (Integrin alpha-IV) (VLA-4) (CD49d)
Length = 1038
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 112 IHHSKTDRY*SVNLIQIDIHIFLIFVLIISYI 17
+HH + RY ++ +I + + LI +L+ISY+
Sbjct: 973 LHHQRPKRYFTIVIISSSLLLGLIVLLLISYV 1004
>sp|Q60301|YY02_METJA Hypothetical adenine-specific methylase MJECS02
Length = 1181
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -1
Query: 259 VCNEISGYLKKIDKVNIA*LNY--SVWKSLN 173
+CNEI+G +KK D+ +I L Y ++ K LN
Sbjct: 1136 ICNEINGIIKKYDEKSIDCLKYCQNIIKLLN 1166
>sp|Q8DC96|ICIA_VIBVU Chromosome initiation inhibitor (OriC replication inhibitor)
Length = 298
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 203 LGNIYFINFFQISRDFITNHSVGS 274
L N + + F ISRD I NH+VGS
Sbjct: 202 LHNRFLHDHFNISRDSIINHNVGS 225
>sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1
Length = 326
Score = 27.7 bits (60), Expect = 8.5
Identities = 19/81 (23%), Positives = 39/81 (48%)
Frame = +2
Query: 26 NDQHKNKKNMDIYLN*IDRLISVGFTVMNLSKNVQYNNKILKNIMNQFNIQRFPN*IIKL 205
N + N K M+ L I+ + + + N +KN + N ++ N+MN+ + KL
Sbjct: 34 NTNNNNMKYMNNKLQSINNMNNWSLQMYNYNKNNELNMMMMMNMMNKL--------LYKL 85
Query: 206 GNIYFINFFQISRDFITNHSV 268
N+ IN ++ + N+++
Sbjct: 86 MNMIMINNMTMNVNNKNNNNI 106
>sp|Q7MHL5|ICIA_VIBVY Chromosome initiation inhibitor (OriC replication inhibitor)
Length = 298
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 203 LGNIYFINFFQISRDFITNHSVGS 274
L N + + F ISRD I NH+VGS
Sbjct: 202 LHNRFLHDHFNISRDSIINHNVGS 225
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,540,095
Number of Sequences: 369166
Number of extensions: 484942
Number of successful extensions: 849
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)