Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02167
(847 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q93454|NPP17_CAEEL Nucleoporin-17 (Nuclear pore complex ... 42 0.003
sp|Q8K9N9|6PGL_BUCAP 6-phosphogluconolactonase (6-P-glucono... 39 0.018
sp|P23232|GBB_LOLFO Guanine nucleotide-binding protein beta... 35 0.20
sp|P26308|GBB1_DROME Guanine nucleotide-binding protein bet... 35 0.34
sp|P39706|SWD1_YEAST COMPASS component SWD1 (Complex protei... 33 0.99
sp|Q11176|WDR1_CAEEL Actin interacting protein 1 (AIP1) (Un... 33 1.3
sp|P87053|POF1_SCHPO F-box/WD-repeat protein pof1 (Skp1-bin... 33 1.3
sp|P39696|COMER_BACSU ComE operon protein 4 33 1.3
sp|P61243|YCF2_PHYPA Protein ycf2 33 1.3
sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein bet... 32 1.7
>sp|Q93454|NPP17_CAEEL Nucleoporin-17 (Nuclear pore complex protein 17) (CeRAE1)
Length = 373
Score = 41.6 bits (96), Expect = 0.003
Identities = 36/191 (18%), Positives = 76/191 (39%), Gaps = 1/191 (0%)
Frame = +2
Query: 8 LFVVGSFNFGFKLWFVNDVNRECLFLILPQNTLNVPLKNQFSCLTEFSINSKYLIAPVKN 187
+ GS++ ++W ND N F Q + P+ + + +SK IA
Sbjct: 59 MLACGSWDGTIRVWMFNDANT---FEGKAQQNIPAPILD----IAWIEDSSKIFIACADK 111
Query: 188 LLLIYDITQNLEKISPSIIIPAHGSRIITLQYIGDELNEKIVTSSIDKSVKIWNLKNSLS 367
++D+ N ++ H + T +I + ++T S DK+++ W++KN +
Sbjct: 112 EARLWDLASN-----QVAVVGTHDGPVKTCHWINGNNYQCLMTGSFDKTLRFWDMKNLPN 166
Query: 368 HKLQFLDKMERPIEGMSVCLNNIDIFPY-ILAFTRSSASLFNITNGTIQESFQTVQSSYI 544
++ + V ++P ++A ++N+ NG + Q +
Sbjct: 167 QTQMAQIQLPERVYAADV------LYPMAVVALANKHIKVYNLENGPTEVKDIESQLKFQ 220
Query: 545 INCHLILRENS 577
I C I ++ S
Sbjct: 221 IRCISIFKDKS 231
>sp|Q8K9N9|6PGL_BUCAP 6-phosphogluconolactonase (6-P-gluconolactonase)
Length = 333
Score = 38.9 bits (89), Expect = 0.018
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 5/144 (3%)
Frame = +2
Query: 281 YIGDELNEKIVTSSIDKSVKIWNLKNSLSHKLQFLDKMERPIEGMSVCLNNIDIFPYILA 460
Y +ELN + I K K+ +KN + KL D + + + L + F Y+
Sbjct: 191 YTVNELNGSVDVWKISKENKVLEVKNIQNIKL-LNDLISKKYWSSDIHLTSCGNFLYVSD 249
Query: 461 FTRSSASLFNIT-NGTIQESFQTVQSSYIINCHLILRENSFLVIICE-SKLVSIYYF--- 625
+S SLF++ N F+ + I R N++L++I + S +S+Y
Sbjct: 250 RYLNSISLFHVNKNDNTIIFFKQYLTEEQPRAFCIDRNNNYLIVIGQKSNKLSVYKICQK 309
Query: 626 IGMLKKIDKYECSEGTQHYQSFFV 697
G LKKI++Y+ G SF +
Sbjct: 310 TGELKKINQYQTGNGPLWITSFLI 333
>sp|P23232|GBB_LOLFO Guanine nucleotide-binding protein beta subunit
Length = 341
Score = 35.4 bits (80), Expect = 0.20
Identities = 28/138 (20%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Frame = +2
Query: 110 VPLKNQFSCLTEFSINSKYLIAP-VKNLLLIYDITQNLEKISPSIIIPAHGSRIITLQYI 286
+PL++ + ++ + Y+ + N+ IY + + S +P H + ++I
Sbjct: 94 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFI 153
Query: 287 GDELNEKIVTSSIDKSVKIWNLKNSLSHKLQFLDKMERPIEGMSVCLNNIDIFPYILAFT 466
D +IVTSS D + +WN++ +++ + +S+ D+ ++
Sbjct: 154 DDN---QIVTSSGDMTCALWNIET--GNQITSFGGHTGDVMSLSLA---PDMRTFVSGAC 205
Query: 467 RSSASLFNITNGTIQESF 520
+SA LF+I +G +++F
Sbjct: 206 DASAKLFDIRDGICKQTF 223
>sp|P26308|GBB1_DROME Guanine nucleotide-binding protein beta subunit 1
Length = 340
Score = 34.7 bits (78), Expect = 0.34
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +2
Query: 110 VPLKNQFSCLTEFSINSKYLIAP-VKNLLLIYDITQNLEKISPSIIIPAHGSRIITLQYI 286
+PL++ + ++ + Y+ + N+ IY++ + S +P HG + +++
Sbjct: 93 IPLRSSWVMTCAYAPSGSYVACGGLDNMCSIYNLKTREGNVRVSRELPGHGGYLSCCRFL 152
Query: 287 GDELNEKIVTSSIDKSVKIWNLKNSL 364
D +IVTSS D S +W+++ L
Sbjct: 153 DDN---QIVTSSGDMSCGLWDIETGL 175
>sp|P39706|SWD1_YEAST COMPASS component SWD1 (Complex proteins associated with SET1
protein SWD1) (Set1C component SWD1)
Length = 426
Score = 33.1 bits (74), Expect = 0.99
Identities = 44/187 (23%), Positives = 84/187 (44%), Gaps = 11/187 (5%)
Frame = +2
Query: 98 NTLNVPLKNQFSCLTEFSINSKYLIAPVKN-LLLIYDITQNLEKISPSIIIPAHGSRIIT 274
+T+ PL+ + CL +FS YL N L+IYD+ P ++ AH I +
Sbjct: 21 HTIENPLRTE--CL-QFSPCGDYLALGCANGALVIYDMDTFRPICVPGNMLGAHVRPITS 77
Query: 275 LQYIGDELNEKIVTSSIDKSVKIWNLKNSLSHKLQFLDKMERPIEGMS-------VCLNN 433
+ + D ++TSS D S+K+W+L S L+ + + + PI G +C+
Sbjct: 78 IAWSPD--GRLLLTSSRDWSIKLWDLSKP-SKPLKEI-RFDSPIWGCQWLDAKRRLCVAT 133
Query: 434 I--DIFPYILAFTRSS-ASLFNITNGTIQESFQTVQSSYIINCHLILRENSFLVIICESK 604
I + Y++ F+ ASL ++ ++ T Y++ C + + + +++
Sbjct: 134 IFEESDAYVIDFSNDPVASL--LSKSDEKQLSSTPDHGYVLVCTVHTKHPNIIIVGTSKG 191
Query: 605 LVSIYYF 625
+ Y F
Sbjct: 192 WLDFYKF 198
>sp|Q11176|WDR1_CAEEL Actin interacting protein 1 (AIP1) (Uncoordinated protein 78)
Length = 611
Score = 32.7 bits (73), Expect = 1.3
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +2
Query: 146 FSINSKYLIAPVKNLLLI-YDITQNLEKISPSIIIPAHGSRIITLQYIGDELNEKIVTSS 322
FS N +L+A ++ +I Y + N E ++ + H +++ + + D N ++ T S
Sbjct: 499 FSNNGAFLVATDQSRKVIPYSVANNFE-LAHTNSWTFHTAKVACVSWSPD--NVRLATGS 555
Query: 323 IDKSVKIWNLKNSLSHKL 376
+D SV +WN+ H +
Sbjct: 556 LDNSVIVWNMNKPSDHPI 573
>sp|P87053|POF1_SCHPO F-box/WD-repeat protein pof1 (Skp1-binding protein 1)
Length = 605
Score = 32.7 bits (73), Expect = 1.3
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +2
Query: 179 VKNLLLI--YDIT---QNLEKISPSIIIPAHGSRIITLQYIGDELNEKIVTSSIDKSVKI 343
V+N+L YD T NL ++ H S + LQ+ D+ K+++ S+DK+++I
Sbjct: 282 VRNILASGSYDATIRLWNLATFQQVALLEGHSSGVTCLQF--DQC--KLISGSMDKTIRI 337
Query: 344 WNLKNS 361
WN + S
Sbjct: 338 WNYRTS 343
>sp|P39696|COMER_BACSU ComE operon protein 4
Length = 273
Score = 32.7 bits (73), Expect = 1.3
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +2
Query: 290 DELNEKIVTSSIDKSVKIWNLKNSLSHKLQFLDKMERPIEGMSVCLNNIDIFPYI---LA 460
D N I +I+K++ I N NS++ + L+K+ E + +C+ +DI+P + L
Sbjct: 26 DPSNMTITNRTIEKALHIKNRYNSIN-VTESLEKLVSENEMIFICVKPLDIYPLLARALP 84
Query: 461 FTRSSASLFNITNGTIQESFQTVQSSYIINCHL 559
+ R L +IT+ QT Q + C +
Sbjct: 85 YLRKDHILISITS-----PVQTEQLEQYVPCQV 112
>sp|P61243|YCF2_PHYPA Protein ycf2
Length = 2259
Score = 32.7 bits (73), Expect = 1.3
Identities = 56/259 (21%), Positives = 109/259 (42%), Gaps = 7/259 (2%)
Frame = +2
Query: 83 LILPQNTL-NVPLKNQFSCLTE--FSINSKYLIAPV----KNLLLIYDITQNLEKISPSI 241
LI+ QN L + + N T F + K L+ + + L YD+ + + +
Sbjct: 685 LIIKQNLLFSKKINNDIHYQTNENFKLKKKLLVNKIIYKKTKIYLKYDLKKKFQSYN--- 741
Query: 242 IIPAHGSRIITLQYIGDELNEKIVTSSIDKSVKIWNLKNSLSHKLQFLDKMERPIEGMSV 421
+T +I + ++ K + ++ K NL SL+H L ++ I ++
Sbjct: 742 --------FVTNSFIKNRISYKYIYNNYYK-----NLTESLNHLLLIFSS-DKKINLKNI 787
Query: 422 CLNNIDIFPYILAFTRSSASLFNITNGTIQESFQTVQSSYIINCHLILRENSFLVIICES 601
N ID I+ + + S F S++ ++ N + N + +I ++
Sbjct: 788 TKNIID--QKIVNWKKKGKSYF---------SYKIIKK----NIFNYWKYNKYKLIDKKN 832
Query: 602 KLVSIYYFIGMLKKIDKYECSEGTQHYQSFFVESKNKLILFSNKVQESVIVCNIYILGET 781
K + + F + K+ + S T+ F+++KN +I +S K+ + N YI +T
Sbjct: 833 KNKNTFKFF-IKKQRNLIVLSNKTK-----FIDNKNSIIKWSKKLNKK----NTYIFYKT 882
Query: 782 LTLISYFNYNLPSKFIHIY 838
+I Y N+N SK + Y
Sbjct: 883 FLVIFYENFNNISKLLLYY 901
>sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein beta subunit 4 (Transducin beta
chain 4)
Length = 340
Score = 32.3 bits (72), Expect = 1.7
Identities = 28/138 (20%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
Frame = +2
Query: 110 VPLKNQFSCLTEFSINSKYLIAP-VKNLLLIYDITQNLEKISPSIIIPAHGSRIITLQYI 286
+PL++ + ++ + Y+ + N+ IY++ + S +P H + +++
Sbjct: 93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELPGHTGYLSCCRFL 152
Query: 287 GDELNEKIVTSSIDKSVKIWNLKNSLSHKLQFLDKMERPIEGMSVCLNNIDIFPYILAFT 466
D +IVTSS D + +W+++ + Q + MS+ L+ D+ ++
Sbjct: 153 DDS---QIVTSSGDTTCALWDIETA----QQTTTFTGHSGDVMSLSLSP-DMRTFVSGAC 204
Query: 467 RSSASLFNITNGTIQESF 520
+S+ L++I +G ++SF
Sbjct: 205 DASSKLWDIRDGMCRQSF 222
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,108,127
Number of Sequences: 369166
Number of extensions: 1704677
Number of successful extensions: 4638
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4625
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)