Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02166
(554 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P58148|YCX9_ASTLO Hypothetical 15.0 kDa protein in rpl12... 29 8.9
sp|Q89FY1|ASPD_BRAJA Probable L-aspartate dehydrogenase 29 8.9
>sp|P58148|YCX9_ASTLO Hypothetical 15.0 kDa protein in rpl12-rps7 intergenic region
(ORF122)
Length = 122
Score = 28.9 bits (63), Expect = 8.9
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = -2
Query: 394 DMIISNESDSDIEYFVLISYFSNSI*LNLSKNFIFIKSFLDISMFSF 254
D+I+SN ++++ +Y + + Y N + S NF+ K +LD ++ +
Sbjct: 19 DLILSNSNENEYDYIIKLIY-ENLYNICFSINFVLKKIYLDKFVYKY 64
>sp|Q89FY1|ASPD_BRAJA Probable L-aspartate dehydrogenase
Length = 280
Score = 28.9 bits (63), Expect = 8.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 546 FVFYNNILFQTLLS*LIIFSKTVKSFCPAFPANL 445
F+ +NNI TL L +F T + FPANL
Sbjct: 168 FIVHNNIDIDTLREPLKLFEGTAREAAKGFPANL 201
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,907,287
Number of Sequences: 369166
Number of extensions: 506730
Number of successful extensions: 1094
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)