Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02164
(192 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q00947|STP1_YEAST Zinc finger protein STP1 31 1.0
sp|P10077|ZFP27_MOUSE Zinc finger protein 27 (Zfp-27) (mKR4... 29 3.9
sp|O75362|ZN217_HUMAN Zinc finger protein 217 28 6.7
sp|Q6P3V2|Z585A_HUMAN Zinc finger protein 585A 28 8.7
>sp|Q00947|STP1_YEAST Zinc finger protein STP1
Length = 577
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = +3
Query: 12 DSFKTHLTLEHDLYKTKRFPKDKRQ----CIYCGGFITSYQTL---HVHCRNC 149
D++KTHL H LY P+D+ + C CG + ++ + H+ +C
Sbjct: 271 DTYKTHLKARHVLYPKGVKPQDRNKSSGHCAQCGEYFSTIENFVENHIESGDC 323
>sp|P10077|ZFP27_MOUSE Zinc finger protein 27 (Zfp-27) (mKR4 protein)
Length = 819
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 84 QCIYCGGFITSYQTLHVHCR 143
QC +CG F TS LHVH R
Sbjct: 486 QCGHCGKFFTSKSQLHVHKR 505
>sp|O75362|ZN217_HUMAN Zinc finger protein 217
Length = 1048
Score = 28.1 bits (61), Expect = 6.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 27 HLTLEHDLYKTKRFPKDKRQCIYCGGFITSYQTLHVHCR 143
HL D K K R+C YCG F S L++H R
Sbjct: 454 HLDKNDDGGKIKHLTSS-RECSYCGKFFRSNYYLNIHLR 491
>sp|Q6P3V2|Z585A_HUMAN Zinc finger protein 585A
Length = 769
Score = 27.7 bits (60), Expect = 8.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 21 KTHLTLEHDLYKTKRFPKDKRQCIYCGGFITSYQTLHVHCR 143
K HL + H + T P +C +CG TS LHVH R
Sbjct: 422 KAHL-IAHQIIHTGEKP---HKCGHCGKLFTSKSQLHVHKR 458
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,786,517
Number of Sequences: 369166
Number of extensions: 359257
Number of successful extensions: 809
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 68,354,980
effective HSP length: 35
effective length of database: 61,889,255
effective search space used: 1732899140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)