Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02155
(840 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BH43|WASF2_MOUSE Wiskott-Aldrich syndrome protein fami... 32 1.7
sp|Q9Y6W5|WASF2_HUMAN Wiskott-Aldrich syndrome protein fami... 32 2.2
sp|Q8VHI6|WASF3_MOUSE Wiskott-Aldrich syndrome protein fami... 30 6.4
sp|Q9XYP8|GCP3_DROME Gamma-tubulin complex component 3 homo... 30 8.3
>sp|Q8BH43|WASF2_MOUSE Wiskott-Aldrich syndrome protein family member 2 (WASP-family
protein member 2) (WAVE-2 protein)
Length = 497
Score = 32.3 bits (72), Expect = 1.7
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1
Query: 169 ENKQPKLSNYAANTQKLDLLTAIRNGIQLRKV---GESDNRPVPISEAVSKAERKFDVQ 336
E +PK S A + + DLL+AIR G QLR+V E + R V ++ + R+ V+
Sbjct: 421 EATKPKSSLPAVSDARSDLLSAIRQGFQLRRVEEQREQEKRDVVGNDVATILSRRIAVE 479
>sp|Q9Y6W5|WASF2_HUMAN Wiskott-Aldrich syndrome protein family member 2 (WASP-family
protein member 2) (WAVE-2 protein) (Verprolin homology
domain-containing protein 2)
Length = 498
Score = 32.0 bits (71), Expect = 2.2
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1
Query: 169 ENKQPKLSNYAANTQKLDLLTAIRNGIQLRKV---GESDNRPVPISEAVSKAERKFDVQ 336
+ +PK S A + + DLL+AIR G QLR+V E + R V ++ + R+ V+
Sbjct: 422 DTTKPKSSLPAVSDARSDLLSAIRQGFQLRRVEEQREQEKRDVVGNDVATILSRRIAVE 480
>sp|Q8VHI6|WASF3_MOUSE Wiskott-Aldrich syndrome protein family member 3 (WASP-family
protein member 3) (WAVE-3 protein)
Length = 501
Score = 30.4 bits (67), Expect = 6.4
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +1
Query: 169 ENKQPKLSNYAANTQKLDLLTAIRNGIQLRKVGE 270
E K+P+ + + + DLL AIR GIQL+KV E
Sbjct: 425 EAKRPEPAQPPISDARSDLLAAIRMGIQLKKVQE 458
>sp|Q9XYP8|GCP3_DROME Gamma-tubulin complex component 3 homolog (Gamma ring complex protein
91) (dGrip91) (d91p)
Length = 917
Score = 30.0 bits (66), Expect = 8.3
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = +2
Query: 428 YGQVIMINNYIERKDKYLFRELNYYDLEVQELFNINSMYILYTDQNQ 568
+G + N Y +++D L + L + + + +F +NS +++ T Q
Sbjct: 870 FGTRLDFNEYYKKRDTNLSKPLTFEHMRMSNVFAVNSRFVICTPSTQ 916
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,902,506
Number of Sequences: 369166
Number of extensions: 1109165
Number of successful extensions: 2828
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2826
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)