Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02147
(269 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8IQC1|FA18_DROME FAM18-like protein CG5021 57 1e-08
sp|Q9D8T4|FA18B_MOUSE Protein FAM18B 40 0.001
sp|Q5R9I4|FA18B_PONPY Protein FAM18B 40 0.001
sp|Q18449|YC2L_CAEEL Hypothetical protein C34D4.4 in chromo... 36 0.024
sp|Q9NYZ1|FA18B_HUMAN Protein FAM18B 36 0.032
sp|Q86I95|FA18_DICDI Hypothetical FAM18-like protein 32 0.46
sp|Q8LEK2|FA18_ARATH FAM18-like protein At1g09330 32 0.60
sp|P45859|MMGE_BACSU Protein mmgE 30 1.3
>sp|Q8IQC1|FA18_DROME FAM18-like protein CG5021
Length = 223
Score = 57.4 bits (137), Expect = 1e-08
Identities = 28/65 (43%), Positives = 42/65 (64%)
Frame = +1
Query: 4 LLFLGSVFTLNLHWLMAVGVASAMNAANLYGYIRCKFGGNDNIKRAGSNLIIDNVFTRLW 183
L FL ++F L WL+ V +A A+NAANLYGY++C +G N ++ A + D V T+ +
Sbjct: 143 LFFLFALFGLKFKWLLLVMIAIALNAANLYGYVKCNYGANKDLNSAAT----DFVKTQFF 198
Query: 184 KNNVN 198
KN V+
Sbjct: 199 KNAVD 203
>sp|Q9D8T4|FA18B_MOUSE Protein FAM18B
Length = 205
Score = 40.4 bits (93), Expect = 0.001
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 19 SVFTLNLHWLMAVGVASAMNAANLYGYIRCKFGGNDNI 132
++F+ + WL V + + ANLYGYIRCK G N+
Sbjct: 145 ALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSKKNL 182
>sp|Q5R9I4|FA18B_PONPY Protein FAM18B
Length = 205
Score = 40.4 bits (93), Expect = 0.001
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 19 SVFTLNLHWLMAVGVASAMNAANLYGYIRCKFGGNDNI 132
++F+ + WL V + + ANLYGYIRCK G N+
Sbjct: 145 ALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRKNL 182
>sp|Q18449|YC2L_CAEEL Hypothetical protein C34D4.4 in chromosome IV
Length = 247
Score = 36.2 bits (82), Expect = 0.024
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 4 LLFLGSVF-TLNLHWLMAVGVASAMNAANLYGYIRCKFGGNDNI 132
+ F+ + F TL W++ + + MN ANL+GY+RC++ + +
Sbjct: 174 IFFVVTAFLTLKFEWMIVALLGALMNMANLWGYLRCRWNNTEQM 217
>sp|Q9NYZ1|FA18B_HUMAN Protein FAM18B
Length = 205
Score = 35.8 bits (81), Expect = 0.032
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 19 SVFTLNLHWLMAVGVASAMNAANLYGYIRCK 111
++F+ + WL V + + ANLYGYIRCK
Sbjct: 145 ALFSFRVKWLAVVIMGVVLQGANLYGYIRCK 175
>sp|Q86I95|FA18_DICDI Hypothetical FAM18-like protein
Length = 198
Score = 32.0 bits (71), Expect = 0.46
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 19 SVFTLNLHWLMAVGVASAMNAANLYGYIRCKFGGNDNIKRAGSNLIIDNV 168
S+F L+ WL+ V + ANL GYI+C +K + I+ +
Sbjct: 141 SLFGLSFLWLVVEIVCFLLAGANLLGYIKCAKDARKKVKGMAQSYIVGTI 190
>sp|Q8LEK2|FA18_ARATH FAM18-like protein At1g09330
Length = 186
Score = 31.6 bits (70), Expect = 0.60
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 1 ALLFLGSVFTL---NLHWLMAVGVASAMNAANLYGYIRCKFGGNDNIKRAGSNLI 156
A F+ VF+L +L+ VGV ++N AN+ G+ +CK ++ S I
Sbjct: 117 AAWFILGVFSLIRFQADYLLVVGVCLSLNVANIIGFTKCKKDAKKQFQQFASQTI 171
>sp|P45859|MMGE_BACSU Protein mmgE
Length = 472
Score = 30.4 bits (67), Expect = 1.3
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +1
Query: 19 SVFTLNLHWLMAVGVASAMNAANLYGYIRCKFGGNDNIKRAGSNLIIDNVFTRLWKNNVN 198
S+ + L ++ V VA+ AA L G GG + IK A SN IDN R ++++ N
Sbjct: 155 SLNRVGLDHVLFVKVATTAVAAKLLG------GGREEIKNALSNAWIDNAALRTYRHSPN 208
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,326,002
Number of Sequences: 369166
Number of extensions: 508653
Number of successful extensions: 1247
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 68,354,980
effective HSP length: 59
effective length of database: 57,455,615
effective search space used: 1723668450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)